RNA–Protein interactions for RNA: ENST00000486935.2

SEMA4D-219, Transcript of semaphorin 4D, humanhuman

TSL 2

Gene SEMA4D, Length 969 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-219ENST00000486935 NISCHQ9Y2I1 1504 aa37.81■■■■□ 3.64
SEMA4D-219ENST00000486935 CCDC180Q9P1Z9 1646 aa33.68■■■□□ 2.98
SEMA4D-219ENST00000486935 ABCC9O60706 1549 aa33.65■■■□□ 2.98
SEMA4D-219ENST00000486935 DCAF8L2P0C7V8 631 aa32.06■■■□□ 2.72
SEMA4D-219ENST00000486935 RB1CC1Q8TDY2 1594 aa32.04■■■□□ 2.72
SEMA4D-219ENST00000486935 NACADO15069 1562 aa31.88■■■□□ 2.69
SEMA4D-219ENST00000486935 MYO15BQ96JP2 1530 aa31.49■■■□□ 2.63
SEMA4D-219ENST00000486935 PABPN1Q86U42 306 aaKnown RBP eCLIP31.48■■■□□ 2.63
SEMA4D-219ENST00000486935 DNAJC5BQ9UF47 199 aa31.43■■■□□ 2.62
SEMA4D-219ENST00000486935 ZCCHC6Q5VYS8 1495 aaKnown RBP31.34■■■□□ 2.61
SEMA4D-219ENST00000486935 UNC13AQ9UPW8 1703 aa31.19■■■□□ 2.58
SEMA4D-219ENST00000486935 DCAF1Q9Y4B6 1507 aa31.19■■■□□ 2.58
SEMA4D-219ENST00000486935 BICRAQ9NZM4 1560 aa31.08■■■□□ 2.57
SEMA4D-219ENST00000486935 SCRIBQ14160 1630 aa30.83■■■□□ 2.53
SEMA4D-219ENST00000486935 SHROOM4Q9ULL8 1493 aa30.64■■■□□ 2.5
SEMA4D-219ENST00000486935 CC2D2AQ9P2K1 1620 aa30.33■■■□□ 2.45
SEMA4D-219ENST00000486935 EIF4G1Q04637 1599 aaKnown RBP30.32■■■□□ 2.44
SEMA4D-219ENST00000486935 CECR2Q9BXF3 1484 aa30.26■■■□□ 2.44
SEMA4D-219ENST00000486935 NCAPD3P42695 1498 aa29.48■■■□□ 2.31
SEMA4D-219ENST00000486935 ATAD2BQ9ULI0 1458 aa29.43■■■□□ 2.3
SEMA4D-219ENST00000486935 SMARCA4P51532 1647 aa29.38■■■□□ 2.29
SEMA4D-219ENST00000486935 SMARCA2P51531 1590 aa29.31■■■□□ 2.28
SEMA4D-219ENST00000486935 BAZ1AQ9NRL2 1556 aaPredicted RBP29.3■■■□□ 2.28
SEMA4D-219ENST00000486935 HMGXB3Q12766 1538 aa29.2■■■□□ 2.27
SEMA4D-219ENST00000486935 BAZ1BQ9UIG0 1483 aaKnown RBP29.16■■■□□ 2.26
SEMA4D-219ENST00000486935 MROH2BQ7Z745 1585 aa29.15■■■□□ 2.26
SEMA4D-219ENST00000486935 PEG3Q9GZU2 1588 aa29.07■■■□□ 2.24
SEMA4D-219ENST00000486935 ERCC6Q03468 1493 aa29.04■■■□□ 2.24
SEMA4D-219ENST00000486935 NESP48681 1621 aa28.96■■■□□ 2.23
SEMA4D-219ENST00000486935 CUX2O14529 1486 aa28.83■■■□□ 2.21
SEMA4D-219ENST00000486935 WIZO95785 1651 aa28.78■■■□□ 2.2
SEMA4D-219ENST00000486935 LAMC3Q9Y6N6 1575 aa28.71■■■□□ 2.19
SEMA4D-219ENST00000486935 RSF1Q96T23 1441 aaPredicted RBP28.68■■■□□ 2.18
SEMA4D-219ENST00000486935 DNAJC5Q9H3Z4 198 aa28.66■■■□□ 2.18
SEMA4D-219ENST00000486935 CADPSQ9ULU8 1353 aa28.64■■■□□ 2.18
SEMA4D-219ENST00000486935 PDS5BQ9NTI5 1447 aa28.64■■■□□ 2.18
SEMA4D-219ENST00000486935 THOC2Q8NI27 1593 aaKnown RBP28.5■■■□□ 2.15
SEMA4D-219ENST00000486935 KIF21AQ7Z4S6 1674 aa28.47■■■□□ 2.15
SEMA4D-219ENST00000486935 TOP2AP11388 1531 aaKnown RBP28.42■■■□□ 2.14
SEMA4D-219ENST00000486935 MRC2Q9UBG0 1479 aa28.33■■■□□ 2.13
SEMA4D-219ENST00000486935 CFTRP13569 1480 aa28.32■■■□□ 2.12
SEMA4D-219ENST00000486935 FANCD2Q9BXW9 1451 aa28.29■■■□□ 2.12
SEMA4D-219ENST00000486935 CEP164Q9UPV0 1460 aa28.27■■■□□ 2.12
SEMA4D-219ENST00000486935 WDR62O43379 1518 aa28.2■■■□□ 2.1
SEMA4D-219ENST00000486935 CCDC88BA6NC98 1476 aa28.18■■■□□ 2.1
SEMA4D-219ENST00000486935 URB2Q14146 1524 aaKnown RBP28.02■■■□□ 2.08
SEMA4D-219ENST00000486935 PRDM2Q13029 1718 aa27.85■■■□□ 2.05
SEMA4D-219ENST00000486935 TOPBP1Q92547 1522 aa27.76■■■□□ 2.03
SEMA4D-219ENST00000486935 SUPT5HO00267 1087 aaKnown RBP27.74■■■□□ 2.03
SEMA4D-219ENST00000486935 ABCC8Q09428 1581 aa27.72■■■□□ 2.03
SEMA4D-219ENST00000486935 IFT140Q96RY7 1462 aa27.7■■■□□ 2.03
SEMA4D-219ENST00000486935 OSCARQ8IYS5 282 aa27.7■■■□□ 2.02
SEMA4D-219ENST00000486935 ZNF608Q9ULD9 1512 aaPredicted RBP27.66■■■□□ 2.02
SEMA4D-219ENST00000486935 DNMBPQ6XZF7 1577 aa27.63■■■□□ 2.01
SEMA4D-219ENST00000486935 TRIM41Q8WV44 630 aa27.58■■■□□ 2.01
SEMA4D-219ENST00000486935 POLA1P09884 1462 aaPredicted RBP27.49■■□□□ 1.99
SEMA4D-219ENST00000486935 AQRO60306 1485 aaKnown RBP eCLIP27.48■■□□□ 1.99
SEMA4D-219ENST00000486935 SOGA1O94964 1423 aa27.44■■□□□ 1.98
SEMA4D-219ENST00000486935 RAD54L2Q9Y4B4 1467 aa27.44■■□□□ 1.98
SEMA4D-219ENST00000486935 TARBP1Q13395 1621 aaKnown RBP27.43■■□□□ 1.98
SEMA4D-219ENST00000486935 EIF4G3O43432 1585 aaKnown RBP27.42■■□□□ 1.98
SEMA4D-219ENST00000486935 TDRD9Q8NDG6 1382 aaKnown RBP27.38■■□□□ 1.97
SEMA4D-219ENST00000486935 CUX1P39880 1505 aa27.36■■□□□ 1.97
SEMA4D-219ENST00000486935 FGD5Q6ZNL6 1462 aa27.36■■□□□ 1.97
SEMA4D-219ENST00000486935 FBLN2P98095 1184 aa27.35■■□□□ 1.97
SEMA4D-219ENST00000486935 CHMP7Q8WUX9 453 aaPredicted RBP27.16■■□□□ 1.94
SEMA4D-219ENST00000486935 SNAPC4Q5SXM2 1469 aa27.16■■□□□ 1.94
SEMA4D-219ENST00000486935 RIMBP3CA6NJZ7 1639 aa27.15■■□□□ 1.94
SEMA4D-219ENST00000486935 RIMBP3BA6NNM3 1639 aa27.15■■□□□ 1.94
SEMA4D-219ENST00000486935 RIMBP3Q9UFD9 1639 aa27.15■■□□□ 1.94
SEMA4D-219ENST00000486935 CHD1O14646 1710 aa27.14■■□□□ 1.94
SEMA4D-219ENST00000486935 GRIN2BQ13224 1484 aa27.13■■□□□ 1.93
SEMA4D-219ENST00000486935 WDR97A6NE52 1622 aa27.12■■□□□ 1.93
SEMA4D-219ENST00000486935 ARHGEF11O15085 1522 aa27.12■■□□□ 1.93
SEMA4D-219ENST00000486935 GAPVD1Q14C86 1478 aa27.07■■□□□ 1.92
SEMA4D-219ENST00000486935 CYB5RLQ6IPT4 315 aa27.07■■□□□ 1.92
SEMA4D-219ENST00000486935 MAGI1Q96QZ7 1491 aaPredicted RBP27.06■■□□□ 1.92
SEMA4D-219ENST00000486935 WRNQ14191 1432 aaPredicted RBP eCLIP27.05■■□□□ 1.92
SEMA4D-219ENST00000486935 ABCA10Q8WWZ4 1543 aa27.05■■□□□ 1.92
SEMA4D-219ENST00000486935 SYNJ2O15056 1496 aa26.99■■□□□ 1.91
SEMA4D-219ENST00000486935 TOP2BQ02880 1626 aa26.94■■□□□ 1.9
SEMA4D-219ENST00000486935 SYNJ1O43426 1573 aa26.94■■□□□ 1.9
SEMA4D-219ENST00000486935 ABCA5Q8WWZ7 1642 aa26.91■■□□□ 1.9
SEMA4D-219ENST00000486935 BIVM-ERCC5R4GMW8 1640 aa26.9■■□□□ 1.9
SEMA4D-219ENST00000486935 PBRM1Q86U86 1689 aa26.9■■□□□ 1.9
SEMA4D-219ENST00000486935 ARAP1Q96P48 1450 aa26.88■■□□□ 1.89
SEMA4D-219ENST00000486935 CLASP1Q7Z460 1538 aa26.88■■□□□ 1.89
SEMA4D-219ENST00000486935 GRIN2AQ12879 1464 aa26.75■■□□□ 1.87
SEMA4D-219ENST00000486935 FHAD1B1AJZ9 1412 aa26.74■■□□□ 1.87
SEMA4D-219ENST00000486935 TRHP20396 242 aaPredicted RBP26.71■■□□□ 1.87
SEMA4D-219ENST00000486935 ADAMTS12P58397 1594 aa26.71■■□□□ 1.87
SEMA4D-219ENST00000486935 ERICH3Q5RHP9 1530 aa26.7■■□□□ 1.86
SEMA4D-219ENST00000486935 NUP160Q12769 1436 aa26.65■■□□□ 1.86
SEMA4D-219ENST00000486935 CEP170Q5SW79 1584 aa26.62■■□□□ 1.85
SEMA4D-219ENST00000486935 IGF1RP08069 1367 aa26.53■■□□□ 1.84
SEMA4D-219ENST00000486935 KIF27Q86VH2 1401 aa26.53■■□□□ 1.84
SEMA4D-219ENST00000486935 ERCC6L2Q5T890 1561 aa26.53■■□□□ 1.84
SEMA4D-219ENST00000486935 JPH4Q96JJ6 628 aa26.51■■□□□ 1.83
SEMA4D-219ENST00000486935 PRG4Q92954 1404 aaPredicted RBP26.44■■□□□ 1.82
SEMA4D-219ENST00000486935 SHROOM2Q13796 1616 aa26.43■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms