RNA–Protein interactions for RNA: ENST00000486724.5

APTX-228, Transcript of aprataxin, humanhuman

TSL 4

Gene APTX, Length 556 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APTX-228ENST00000486724 NISCHQ9Y2I1 1504 aa21.9■■□□□ 1.1
APTX-228ENST00000486724 ABCC9O60706 1549 aa20.86■□□□□ 0.93
APTX-228ENST00000486724 DNAJC5BQ9UF47 199 aa20.26■□□□□ 0.83
APTX-228ENST00000486724 CCDC180Q9P1Z9 1646 aa20.1■□□□□ 0.81
APTX-228ENST00000486724 RB1CC1Q8TDY2 1594 aa19.53■□□□□ 0.72
APTX-228ENST00000486724 DNAJC5Q9H3Z4 198 aa19.28■□□□□ 0.68
APTX-228ENST00000486724 PABPN1Q86U42 306 aaKnown RBP eCLIP19.23■□□□□ 0.67
APTX-228ENST00000486724 NACADO15069 1562 aa19.18■□□□□ 0.66
APTX-228ENST00000486724 UNC13AQ9UPW8 1703 aa19.06■□□□□ 0.64
APTX-228ENST00000486724 BICRAQ9NZM4 1560 aa18.96■□□□□ 0.63
APTX-228ENST00000486724 CECR2Q9BXF3 1484 aa18.9■□□□□ 0.62
APTX-228ENST00000486724 CC2D2AQ9P2K1 1620 aa18.82■□□□□ 0.6
APTX-228ENST00000486724 DCAF8L2P0C7V8 631 aa18.78■□□□□ 0.6
APTX-228ENST00000486724 SHROOM4Q9ULL8 1493 aa18.7■□□□□ 0.58
APTX-228ENST00000486724 MYO15BQ96JP2 1530 aa18.64■□□□□ 0.58
APTX-228ENST00000486724 EIF4G1Q04637 1599 aaKnown RBP18.59■□□□□ 0.57
APTX-228ENST00000486724 CUX2O14529 1486 aa18.39■□□□□ 0.53
APTX-228ENST00000486724 SCRIBQ14160 1630 aa18.21■□□□□ 0.51
APTX-228ENST00000486724 ERCC6Q03468 1493 aa18.11■□□□□ 0.49
APTX-228ENST00000486724 DCAF1Q9Y4B6 1507 aa18.08■□□□□ 0.48
APTX-228ENST00000486724 TRIM41Q8WV44 630 aa18.07■□□□□ 0.48
APTX-228ENST00000486724 ZCCHC6Q5VYS8 1495 aaKnown RBP17.99■□□□□ 0.47
APTX-228ENST00000486724 THOC2Q8NI27 1593 aaKnown RBP17.72■□□□□ 0.43
APTX-228ENST00000486724 NCAPD3P42695 1498 aa17.69■□□□□ 0.42
APTX-228ENST00000486724 NESP48681 1621 aa17.66■□□□□ 0.42
APTX-228ENST00000486724 SMARCA2P51531 1590 aa17.53■□□□□ 0.4
APTX-228ENST00000486724 HMGXB3Q12766 1538 aa17.52■□□□□ 0.39
APTX-228ENST00000486724 ATAD2BQ9ULI0 1458 aa17.5■□□□□ 0.39
APTX-228ENST00000486724 LAMC3Q9Y6N6 1575 aa17.46■□□□□ 0.39
APTX-228ENST00000486724 KIF21AQ7Z4S6 1674 aa17.45■□□□□ 0.38
APTX-228ENST00000486724 BAZ1AQ9NRL2 1556 aaPredicted RBP17.44■□□□□ 0.38
APTX-228ENST00000486724 PDS5BQ9NTI5 1447 aa17.37■□□□□ 0.37
APTX-228ENST00000486724 OSCARQ8IYS5 282 aa17.33■□□□□ 0.36
APTX-228ENST00000486724 BAZ1BQ9UIG0 1483 aaKnown RBP17.31■□□□□ 0.36
APTX-228ENST00000486724 SMARCA4P51532 1647 aa17.29■□□□□ 0.36
APTX-228ENST00000486724 MRC2Q9UBG0 1479 aa17.28■□□□□ 0.36
APTX-228ENST00000486724 WDR62O43379 1518 aa17.27■□□□□ 0.36
APTX-228ENST00000486724 RIMBP3CA6NJZ7 1639 aa17.25■□□□□ 0.35
APTX-228ENST00000486724 RIMBP3BA6NNM3 1639 aa17.25■□□□□ 0.35
APTX-228ENST00000486724 RIMBP3Q9UFD9 1639 aa17.25■□□□□ 0.35
APTX-228ENST00000486724 AEBP2Q6ZN18 517 aaPredicted RBP17.24■□□□□ 0.35
APTX-228ENST00000486724 PEG3Q9GZU2 1588 aa17.15■□□□□ 0.34
APTX-228ENST00000486724 ARHGEF11O15085 1522 aa17.11■□□□□ 0.33
APTX-228ENST00000486724 CADPSQ9ULU8 1353 aa17.1■□□□□ 0.33
APTX-228ENST00000486724 TRHP20396 242 aaPredicted RBP17.08■□□□□ 0.32
APTX-228ENST00000486724 CEP164Q9UPV0 1460 aa17.05■□□□□ 0.32
APTX-228ENST00000486724 CYB5RLQ6IPT4 315 aa16.97■□□□□ 0.31
APTX-228ENST00000486724 FANCD2Q9BXW9 1451 aa16.93■□□□□ 0.3
APTX-228ENST00000486724 ARAP1Q96P48 1450 aa16.87■□□□□ 0.29
APTX-228ENST00000486724 MROH2BQ7Z745 1585 aa16.85■□□□□ 0.29
APTX-228ENST00000486724 URB2Q14146 1524 aaKnown RBP16.83■□□□□ 0.28
APTX-228ENST00000486724 ZNF608Q9ULD9 1512 aaPredicted RBP16.75■□□□□ 0.27
APTX-228ENST00000486724 RSF1Q96T23 1441 aaPredicted RBP16.74■□□□□ 0.27
APTX-228ENST00000486724 CFTRP13569 1480 aa16.73■□□□□ 0.27
APTX-228ENST00000486724 IFT140Q96RY7 1462 aa16.73■□□□□ 0.27
APTX-228ENST00000486724 CHD1O14646 1710 aa16.69■□□□□ 0.26
APTX-228ENST00000486724 EIF4G3O43432 1585 aaKnown RBP16.67■□□□□ 0.26
APTX-228ENST00000486724 ILDR1Q86SU0 546 aaPredicted RBP16.62■□□□□ 0.25
APTX-228ENST00000486724 WIZO95785 1651 aa16.62■□□□□ 0.25
APTX-228ENST00000486724 PRDM2Q13029 1718 aa16.55■□□□□ 0.24
APTX-228ENST00000486724 FBLN2P98095 1184 aa16.53■□□□□ 0.24
APTX-228ENST00000486724 TOPBP1Q92547 1522 aa16.5■□□□□ 0.23
APTX-228ENST00000486724 CLASP1Q7Z460 1538 aa16.49■□□□□ 0.23
APTX-228ENST00000486724 AQRO60306 1485 aaKnown RBP eCLIP16.48■□□□□ 0.23
APTX-228ENST00000486724 TARBP1Q13395 1621 aaKnown RBP16.44■□□□□ 0.22
APTX-228ENST00000486724 ABCC8Q09428 1581 aa16.43■□□□□ 0.22
APTX-228ENST00000486724 SYNJ1O43426 1573 aa16.41■□□□□ 0.22
APTX-228ENST00000486724 DNMBPQ6XZF7 1577 aa16.39■□□□□ 0.21
APTX-228ENST00000486724 TOP2AP11388 1531 aaKnown RBP16.38■□□□□ 0.21
APTX-228ENST00000486724 GAPVD1Q14C86 1478 aa16.36■□□□□ 0.21
APTX-228ENST00000486724 SNAPC4Q5SXM2 1469 aa16.32■□□□□ 0.2
APTX-228ENST00000486724 POLA1P09884 1462 aaPredicted RBP16.29■□□□□ 0.2
APTX-228ENST00000486724 CHMP7Q8WUX9 453 aaPredicted RBP16.28■□□□□ 0.2
APTX-228ENST00000486724 MAGI1Q96QZ7 1491 aaPredicted RBP16.26■□□□□ 0.19
APTX-228ENST00000486724 WDR97A6NE52 1622 aa16.26■□□□□ 0.19
APTX-228ENST00000486724 KIF13AQ9H1H9 1805 aa16.24■□□□□ 0.19
APTX-228ENST00000486724 TDRD9Q8NDG6 1382 aaKnown RBP16.24■□□□□ 0.19
APTX-228ENST00000486724 KDM4FA0A1W2PPD8 638 aa16.22■□□□□ 0.19
APTX-228ENST00000486724 SYNJ2O15056 1496 aa16.22■□□□□ 0.19
APTX-228ENST00000486724 RAD54L2Q9Y4B4 1467 aa16.21■□□□□ 0.19
APTX-228ENST00000486724 SOGA1O94964 1423 aa16.17■□□□□ 0.18
APTX-228ENST00000486724 CCDC88BA6NC98 1476 aa16.16■□□□□ 0.18
APTX-228ENST00000486724 GRIN2BQ13224 1484 aa16.16■□□□□ 0.18
APTX-228ENST00000486724 ERCC6L2Q5T890 1561 aa16.13■□□□□ 0.17
APTX-228ENST00000486724 KDM6BO15054 1643 aa16.08■□□□□ 0.17
APTX-228ENST00000486724 PBRM1Q86U86 1689 aa16.05■□□□□ 0.16
APTX-228ENST00000486724 FGD5Q6ZNL6 1462 aa16.05■□□□□ 0.16
APTX-228ENST00000486724 CEP170Q5SW79 1584 aa16.04■□□□□ 0.16
APTX-228ENST00000486724 ABCC10Q5T3U5 1492 aa16.03■□□□□ 0.16
APTX-228ENST00000486724 HECW2Q9P2P5 1572 aa16.02■□□□□ 0.16
APTX-228ENST00000486724 FAM69CQ0P6D2 419 aa16.01■□□□□ 0.15
APTX-228ENST00000486724 DIP2BQ9P265 1576 aa15.98■□□□□ 0.15
APTX-228ENST00000486724 SHROOM2Q13796 1616 aa15.97■□□□□ 0.15
APTX-228ENST00000486724 FBXO41Q8TF61 875 aa15.96■□□□□ 0.15
APTX-228ENST00000486724 GRIN2AQ12879 1464 aa15.96■□□□□ 0.14
APTX-228ENST00000486724 MAPKBP1O60336 1514 aa15.95■□□□□ 0.14
APTX-228ENST00000486724 ADGRL1O94910 1474 aa15.95■□□□□ 0.14
APTX-228ENST00000486724 NUP160Q12769 1436 aa15.93■□□□□ 0.14
APTX-228ENST00000486724 ABCA5Q8WWZ7 1642 aa15.9■□□□□ 0.14
APTX-228ENST00000486724 CUX1P39880 1505 aa15.89■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms