RNA–Protein interactions for RNA: ENST00000486572.1

COL1A1-207, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 3

Gene COL1A1, Length 836 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-207ENST00000486572 NISCHQ9Y2I1 1504 aa44.31■■■■■ 4.68
COL1A1-207ENST00000486572 CCDC180Q9P1Z9 1646 aa39.45■■■■□ 3.91
COL1A1-207ENST00000486572 ABCC9O60706 1549 aa38.57■■■■□ 3.76
COL1A1-207ENST00000486572 RB1CC1Q8TDY2 1594 aa37.12■■■■□ 3.53
COL1A1-207ENST00000486572 NACADO15069 1562 aa37.07■■■■□ 3.52
COL1A1-207ENST00000486572 DCAF8L2P0C7V8 631 aa36.96■■■■□ 3.51
COL1A1-207ENST00000486572 ZCCHC6Q5VYS8 1495 aaKnown RBP36.93■■■■□ 3.5
COL1A1-207ENST00000486572 MYO15BQ96JP2 1530 aa36.85■■■■□ 3.49
COL1A1-207ENST00000486572 DCAF1Q9Y4B6 1507 aa36.69■■■■□ 3.46
COL1A1-207ENST00000486572 UNC13AQ9UPW8 1703 aa36.26■■■■□ 3.4
COL1A1-207ENST00000486572 PABPN1Q86U42 306 aaKnown RBP eCLIP36■■■■□ 3.35
COL1A1-207ENST00000486572 BICRAQ9NZM4 1560 aa35.98■■■■□ 3.35
COL1A1-207ENST00000486572 SCRIBQ14160 1630 aa35.97■■■■□ 3.35
COL1A1-207ENST00000486572 SHROOM4Q9ULL8 1493 aa35.66■■■■□ 3.3
COL1A1-207ENST00000486572 DNAJC5BQ9UF47 199 aa35.36■■■■□ 3.25
COL1A1-207ENST00000486572 EIF4G1Q04637 1599 aaKnown RBP35.05■■■■□ 3.2
COL1A1-207ENST00000486572 CC2D2AQ9P2K1 1620 aa34.9■■■■□ 3.18
COL1A1-207ENST00000486572 CECR2Q9BXF3 1484 aa34.66■■■■□ 3.14
COL1A1-207ENST00000486572 SMARCA4P51532 1647 aa34.41■■■■□ 3.1
COL1A1-207ENST00000486572 BAZ1AQ9NRL2 1556 aaPredicted RBP34.36■■■■□ 3.09
COL1A1-207ENST00000486572 ATAD2BQ9ULI0 1458 aa34.2■■■■□ 3.07
COL1A1-207ENST00000486572 NCAPD3P42695 1498 aa34.19■■■■□ 3.06
COL1A1-207ENST00000486572 SMARCA2P51531 1590 aa34.19■■■■□ 3.06
COL1A1-207ENST00000486572 MROH2BQ7Z745 1585 aa34.15■■■■□ 3.06
COL1A1-207ENST00000486572 PEG3Q9GZU2 1588 aa34.08■■■■□ 3.05
COL1A1-207ENST00000486572 HMGXB3Q12766 1538 aa34.05■■■■□ 3.04
COL1A1-207ENST00000486572 BAZ1BQ9UIG0 1483 aaKnown RBP33.94■■■■□ 3.02
COL1A1-207ENST00000486572 WIZO95785 1651 aa33.77■■■■□ 3
COL1A1-207ENST00000486572 RSF1Q96T23 1441 aaPredicted RBP33.74■■■□□ 2.99
COL1A1-207ENST00000486572 TOP2AP11388 1531 aaKnown RBP33.44■■■□□ 2.94
COL1A1-207ENST00000486572 NESP48681 1621 aa33.37■■■□□ 2.93
COL1A1-207ENST00000486572 LAMC3Q9Y6N6 1575 aa33.31■■■□□ 2.92
COL1A1-207ENST00000486572 ERCC6Q03468 1493 aa33.26■■■□□ 2.92
COL1A1-207ENST00000486572 CADPSQ9ULU8 1353 aa33.18■■■□□ 2.9
COL1A1-207ENST00000486572 PDS5BQ9NTI5 1447 aa33.07■■■□□ 2.88
COL1A1-207ENST00000486572 CCDC88BA6NC98 1476 aa33.01■■■□□ 2.88
COL1A1-207ENST00000486572 KIF21AQ7Z4S6 1674 aa33■■■□□ 2.87
COL1A1-207ENST00000486572 CFTRP13569 1480 aa32.99■■■□□ 2.87
COL1A1-207ENST00000486572 CUX2O14529 1486 aa32.93■■■□□ 2.86
COL1A1-207ENST00000486572 THOC2Q8NI27 1593 aaKnown RBP32.91■■■□□ 2.86
COL1A1-207ENST00000486572 SUPT5HO00267 1087 aaKnown RBP32.83■■■□□ 2.85
COL1A1-207ENST00000486572 FANCD2Q9BXW9 1451 aa32.82■■■□□ 2.84
COL1A1-207ENST00000486572 CEP164Q9UPV0 1460 aa32.8■■■□□ 2.84
COL1A1-207ENST00000486572 PRDM2Q13029 1718 aa32.77■■■□□ 2.84
COL1A1-207ENST00000486572 MRC2Q9UBG0 1479 aa32.75■■■□□ 2.83
COL1A1-207ENST00000486572 WDR62O43379 1518 aa32.65■■■□□ 2.82
COL1A1-207ENST00000486572 URB2Q14146 1524 aaKnown RBP32.49■■■□□ 2.79
COL1A1-207ENST00000486572 TOPBP1Q92547 1522 aa32.3■■■□□ 2.76
COL1A1-207ENST00000486572 ABCC8Q09428 1581 aa32.29■■■□□ 2.76
COL1A1-207ENST00000486572 DNMBPQ6XZF7 1577 aa32.27■■■□□ 2.76
COL1A1-207ENST00000486572 IFT140Q96RY7 1462 aa32.1■■■□□ 2.73
COL1A1-207ENST00000486572 CUX1P39880 1505 aa32.04■■■□□ 2.72
COL1A1-207ENST00000486572 POLA1P09884 1462 aaPredicted RBP32.02■■■□□ 2.72
COL1A1-207ENST00000486572 TARBP1Q13395 1621 aaKnown RBP31.95■■■□□ 2.71
COL1A1-207ENST00000486572 FGD5Q6ZNL6 1462 aa31.94■■■□□ 2.7
COL1A1-207ENST00000486572 ZNF608Q9ULD9 1512 aaPredicted RBP31.94■■■□□ 2.7
COL1A1-207ENST00000486572 DNAJC5Q9H3Z4 198 aa31.89■■■□□ 2.7
COL1A1-207ENST00000486572 RAD54L2Q9Y4B4 1467 aa31.86■■■□□ 2.69
COL1A1-207ENST00000486572 SOGA1O94964 1423 aa31.86■■■□□ 2.69
COL1A1-207ENST00000486572 EIF4G3O43432 1585 aaKnown RBP31.85■■■□□ 2.69
COL1A1-207ENST00000486572 WRNQ14191 1432 aaPredicted RBP eCLIP31.83■■■□□ 2.69
COL1A1-207ENST00000486572 TOP2BQ02880 1626 aa31.78■■■□□ 2.68
COL1A1-207ENST00000486572 BIVM-ERCC5R4GMW8 1640 aa31.78■■■□□ 2.68
COL1A1-207ENST00000486572 SYNJ1O43426 1573 aa31.76■■■□□ 2.67
COL1A1-207ENST00000486572 AQRO60306 1485 aaKnown RBP eCLIP31.74■■■□□ 2.67
COL1A1-207ENST00000486572 WDR97A6NE52 1622 aa31.72■■■□□ 2.67
COL1A1-207ENST00000486572 TDRD9Q8NDG6 1382 aaKnown RBP31.68■■■□□ 2.66
COL1A1-207ENST00000486572 ABCA10Q8WWZ4 1543 aa31.63■■■□□ 2.65
COL1A1-207ENST00000486572 ABCA5Q8WWZ7 1642 aa31.53■■■□□ 2.64
COL1A1-207ENST00000486572 GRIN2BQ13224 1484 aa31.52■■■□□ 2.64
COL1A1-207ENST00000486572 GAPVD1Q14C86 1478 aa31.52■■■□□ 2.64
COL1A1-207ENST00000486572 OSCARQ8IYS5 282 aa31.51■■■□□ 2.63
COL1A1-207ENST00000486572 SNAPC4Q5SXM2 1469 aa31.48■■■□□ 2.63
COL1A1-207ENST00000486572 PBRM1Q86U86 1689 aa31.48■■■□□ 2.63
COL1A1-207ENST00000486572 MAGI1Q96QZ7 1491 aaPredicted RBP31.45■■■□□ 2.62
COL1A1-207ENST00000486572 CHD1O14646 1710 aa31.44■■■□□ 2.62
COL1A1-207ENST00000486572 FBLN2P98095 1184 aa31.35■■■□□ 2.61
COL1A1-207ENST00000486572 SYNJ2O15056 1496 aa31.33■■■□□ 2.61
COL1A1-207ENST00000486572 CHMP7Q8WUX9 453 aaPredicted RBP31.27■■■□□ 2.6
COL1A1-207ENST00000486572 ERICH3Q5RHP9 1530 aa31.26■■■□□ 2.59
COL1A1-207ENST00000486572 ADAMTS12P58397 1594 aa31.23■■■□□ 2.59
COL1A1-207ENST00000486572 KIF27Q86VH2 1401 aa31.16■■■□□ 2.58
COL1A1-207ENST00000486572 FHAD1B1AJZ9 1412 aa31.15■■■□□ 2.58
COL1A1-207ENST00000486572 GRIN2AQ12879 1464 aa31.12■■■□□ 2.57
COL1A1-207ENST00000486572 CLASP1Q7Z460 1538 aa31.11■■■□□ 2.57
COL1A1-207ENST00000486572 ARHGEF11O15085 1522 aa31.05■■■□□ 2.56
COL1A1-207ENST00000486572 RIMBP3CA6NJZ7 1639 aa31.05■■■□□ 2.56
COL1A1-207ENST00000486572 RIMBP3BA6NNM3 1639 aa31.05■■■□□ 2.56
COL1A1-207ENST00000486572 RIMBP3Q9UFD9 1639 aa31.05■■■□□ 2.56
COL1A1-207ENST00000486572 TRIM41Q8WV44 630 aa31.02■■■□□ 2.56
COL1A1-207ENST00000486572 IGF1RP08069 1367 aa31.01■■■□□ 2.55
COL1A1-207ENST00000486572 CUL7Q14999 1698 aa30.99■■■□□ 2.55
COL1A1-207ENST00000486572 NUP160Q12769 1436 aa30.98■■■□□ 2.55
COL1A1-207ENST00000486572 CEP170Q5SW79 1584 aa30.96■■■□□ 2.55
COL1A1-207ENST00000486572 RUSC2Q8N2Y8 1516 aa30.84■■■□□ 2.53
COL1A1-207ENST00000486572 CARMIL1Q5VZK9 1371 aa30.83■■■□□ 2.53
COL1A1-207ENST00000486572 ARAP1Q96P48 1450 aa30.79■■■□□ 2.52
COL1A1-207ENST00000486572 SHROOM2Q13796 1616 aa30.76■■■□□ 2.52
COL1A1-207ENST00000486572 CYB5RLQ6IPT4 315 aa30.7■■■□□ 2.51
COL1A1-207ENST00000486572 KIAA0586Q9BVV6 1533 aa30.68■■■□□ 2.5
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms