RNA–Protein interactions for RNA: ENST00000486530.1

HPS3-206, Transcript of HPS3, biogenesis of lysosomal organelles complex 2 subunit 1, humanhuman

TSL 5

Gene HPS3, Length 1,894 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3-206ENST00000486530 NISCHQ9Y2I1 1504 aa44.83■■■■■ 4.77
HPS3-206ENST00000486530 CCDC180Q9P1Z9 1646 aa38.92■■■■□ 3.82
HPS3-206ENST00000486530 ZCCHC6Q5VYS8 1495 aaKnown RBP37.74■■■■□ 3.63
HPS3-206ENST00000486530 DCAF8L2P0C7V8 631 aa37.04■■■■□ 3.52
HPS3-206ENST00000486530 DCAF1Q9Y4B6 1507 aa37.03■■■■□ 3.52
HPS3-206ENST00000486530 SHROOM4Q9ULL8 1493 aa36.93■■■■□ 3.5
HPS3-206ENST00000486530 ABCC9O60706 1549 aa36.79■■■■□ 3.48
HPS3-206ENST00000486530 MYO15BQ96JP2 1530 aa36.54■■■■□ 3.44
HPS3-206ENST00000486530 NACADO15069 1562 aa36.28■■■■□ 3.4
HPS3-206ENST00000486530 RB1CC1Q8TDY2 1594 aa35.91■■■■□ 3.34
HPS3-206ENST00000486530 SCRIBQ14160 1630 aa35.87■■■■□ 3.33
HPS3-206ENST00000486530 SUPT5HO00267 1087 aaKnown RBP35.81■■■■□ 3.32
HPS3-206ENST00000486530 UNC13AQ9UPW8 1703 aa35.19■■■■□ 3.22
HPS3-206ENST00000486530 RSF1Q96T23 1441 aaPredicted RBP34.93■■■■□ 3.18
HPS3-206ENST00000486530 BICRAQ9NZM4 1560 aa34.9■■■■□ 3.18
HPS3-206ENST00000486530 CECR2Q9BXF3 1484 aa34.87■■■■□ 3.17
HPS3-206ENST00000486530 PABPN1Q86U42 306 aaKnown RBP eCLIP34.8■■■■□ 3.16
HPS3-206ENST00000486530 MROH2BQ7Z745 1585 aa34.66■■■■□ 3.14
HPS3-206ENST00000486530 CHIC1Q5VXU3 224 aa34.59■■■■□ 3.13
HPS3-206ENST00000486530 BAZ1AQ9NRL2 1556 aaPredicted RBP34.55■■■■□ 3.12
HPS3-206ENST00000486530 WIZO95785 1651 aa34.4■■■■□ 3.1
HPS3-206ENST00000486530 SMARCA4P51532 1647 aa34.39■■■■□ 3.1
HPS3-206ENST00000486530 TOP2AP11388 1531 aaKnown RBP34.03■■■■□ 3.04
HPS3-206ENST00000486530 PEG3Q9GZU2 1588 aa33.98■■■■□ 3.03
HPS3-206ENST00000486530 ATAD2BQ9ULI0 1458 aa33.85■■■■□ 3.01
HPS3-206ENST00000486530 EIF4G1Q04637 1599 aaKnown RBP33.8■■■■□ 3
HPS3-206ENST00000486530 SMARCA2P51531 1590 aa33.77■■■■□ 3
HPS3-206ENST00000486530 CCDC88BA6NC98 1476 aa33.7■■■□□ 2.99
HPS3-206ENST00000486530 BAZ1BQ9UIG0 1483 aaKnown RBP33.62■■■□□ 2.97
HPS3-206ENST00000486530 TRIM41Q8WV44 630 aa33.62■■■□□ 2.97
HPS3-206ENST00000486530 NCAPD3P42695 1498 aa33.53■■■□□ 2.96
HPS3-206ENST00000486530 HMGXB3Q12766 1538 aa33.43■■■□□ 2.94
HPS3-206ENST00000486530 LOC105371045A0A1W2PR82 267 aa33.28■■■□□ 2.92
HPS3-206ENST00000486530 CC2D2AQ9P2K1 1620 aa33.27■■■□□ 2.92
HPS3-206ENST00000486530 ABCC8Q09428 1581 aa33.19■■■□□ 2.9
HPS3-206ENST00000486530 FAM9AQ8IZU1 332 aaPredicted RBP33.02■■■□□ 2.88
HPS3-206ENST00000486530 WRNQ14191 1432 aaPredicted RBP eCLIP32.87■■■□□ 2.85
HPS3-206ENST00000486530 CFTRP13569 1480 aa32.83■■■□□ 2.85
HPS3-206ENST00000486530 DNAJC5BQ9UF47 199 aa32.76■■■□□ 2.84
HPS3-206ENST00000486530 SYNJ1O43426 1573 aa32.76■■■□□ 2.83
HPS3-206ENST00000486530 EEA1Q15075 1411 aa32.73■■■□□ 2.83
HPS3-206ENST00000486530 CADPSQ9ULU8 1353 aa32.69■■■□□ 2.82
HPS3-206ENST00000486530 SOGA1O94964 1423 aa32.65■■■□□ 2.82
HPS3-206ENST00000486530 PRDM2Q13029 1718 aa32.59■■■□□ 2.81
HPS3-206ENST00000486530 TOP2BQ02880 1626 aa32.58■■■□□ 2.81
HPS3-206ENST00000486530 BIVM-ERCC5R4GMW8 1640 aa32.56■■■□□ 2.8
HPS3-206ENST00000486530 EHMT2Q96KQ7 1210 aa32.54■■■□□ 2.8
HPS3-206ENST00000486530 RUSC2Q8N2Y8 1516 aa32.5■■■□□ 2.79
HPS3-206ENST00000486530 CSRNP3Q8WYN3 585 aa32.44■■■□□ 2.78
HPS3-206ENST00000486530 PCGF6Q9BYE7 350 aa32.43■■■□□ 2.78
HPS3-206ENST00000486530 CUX1P39880 1505 aa32.39■■■□□ 2.78
HPS3-206ENST00000486530 NESP48681 1621 aa32.37■■■□□ 2.77
HPS3-206ENST00000486530 GOLGA3Q08378 1498 aa32.32■■■□□ 2.76
HPS3-206ENST00000486530 KIF21BO75037 1637 aa32.32■■■□□ 2.76
HPS3-206ENST00000486530 TNIKQ9UKE5 1360 aa32.31■■■□□ 2.76
HPS3-206ENST00000486530 FANCD2Q9BXW9 1451 aa32.31■■■□□ 2.76
HPS3-206ENST00000486530 LAMC3Q9Y6N6 1575 aa32.3■■■□□ 2.76
HPS3-206ENST00000486530 TRIM26Q12899 539 aaPredicted RBP32.28■■■□□ 2.76
HPS3-206ENST00000486530 CEP164Q9UPV0 1460 aa32.26■■■□□ 2.76
HPS3-206ENST00000486530 CEP162Q5TB80 1403 aa32.21■■■□□ 2.75
HPS3-206ENST00000486530 UBTFP17480 764 aaKnown RBP32.1■■■□□ 2.73
HPS3-206ENST00000486530 PDS5BQ9NTI5 1447 aa32.09■■■□□ 2.73
HPS3-206ENST00000486530 HRCP23327 699 aa32.01■■■□□ 2.71
HPS3-206ENST00000486530 DNMBPQ6XZF7 1577 aa32■■■□□ 2.71
HPS3-206ENST00000486530 FGD5Q6ZNL6 1462 aa31.99■■■□□ 2.71
HPS3-206ENST00000486530 KIF27Q86VH2 1401 aa31.98■■■□□ 2.71
HPS3-206ENST00000486530 RAPGEF2Q9Y4G8 1499 aa31.98■■■□□ 2.71
HPS3-206ENST00000486530 ERICH3Q5RHP9 1530 aa31.98■■■□□ 2.71
HPS3-206ENST00000486530 TOPBP1Q92547 1522 aa31.97■■■□□ 2.71
HPS3-206ENST00000486530 PRXQ9BXM0 1461 aa31.92■■■□□ 2.7
HPS3-206ENST00000486530 URB2Q14146 1524 aaKnown RBP31.92■■■□□ 2.7
HPS3-206ENST00000486530 KIF21AQ7Z4S6 1674 aa31.9■■■□□ 2.7
HPS3-206ENST00000486530 POLA1P09884 1462 aaPredicted RBP31.84■■■□□ 2.69
HPS3-206ENST00000486530 CUX2O14529 1486 aa31.82■■■□□ 2.68
HPS3-206ENST00000486530 CLIP1P30622 1438 aa31.81■■■□□ 2.68
HPS3-206ENST00000486530 RAD54L2Q9Y4B4 1467 aa31.76■■■□□ 2.68
HPS3-206ENST00000486530 ABCA10Q8WWZ4 1543 aa31.72■■■□□ 2.67
HPS3-206ENST00000486530 IGF1RP08069 1367 aa31.71■■■□□ 2.67
HPS3-206ENST00000486530 PPARGC1BQ86YN6 1023 aaKnown RBP31.67■■■□□ 2.66
HPS3-206ENST00000486530 MRC2Q9UBG0 1479 aa31.66■■■□□ 2.66
HPS3-206ENST00000486530 VPS8Q8N3P4 1428 aa31.63■■■□□ 2.65
HPS3-206ENST00000486530 WDR97A6NE52 1622 aa31.54■■■□□ 2.64
HPS3-206ENST00000486530 ERCC6Q03468 1493 aa31.54■■■□□ 2.64
HPS3-206ENST00000486530 CARMIL1Q5VZK9 1371 aa31.51■■■□□ 2.64
HPS3-206ENST00000486530 WDR62O43379 1518 aa31.48■■■□□ 2.63
HPS3-206ENST00000486530 TARBP1Q13395 1621 aaKnown RBP31.47■■■□□ 2.63
HPS3-206ENST00000486530 TDRD9Q8NDG6 1382 aaKnown RBP31.45■■■□□ 2.63
HPS3-206ENST00000486530 ARAP1Q96P48 1450 aa31.44■■■□□ 2.62
HPS3-206ENST00000486530 ABCA5Q8WWZ7 1642 aa31.41■■■□□ 2.62
HPS3-206ENST00000486530 CUL7Q14999 1698 aa31.41■■■□□ 2.62
HPS3-206ENST00000486530 RANGAP1P46060 587 aaPredicted RBP31.4■■■□□ 2.62
HPS3-206ENST00000486530 GAPVD1Q14C86 1478 aa31.38■■■□□ 2.61
HPS3-206ENST00000486530 THOC2Q8NI27 1593 aaKnown RBP31.34■■■□□ 2.61
HPS3-206ENST00000486530 TTBK1Q5TCY1 1321 aaPredicted RBP31.33■■■□□ 2.61
HPS3-206ENST00000486530 ZEB1P37275 1124 aaPredicted RBP31.31■■■□□ 2.6
HPS3-206ENST00000486530 ARHGAP35Q9NRY4 1499 aa31.31■■■□□ 2.6
HPS3-206ENST00000486530 APLP2Q06481 763 aa31.3■■■□□ 2.6
HPS3-206ENST00000486530 IFT140Q96RY7 1462 aa31.3■■■□□ 2.6
HPS3-206ENST00000486530 AQRO60306 1485 aaKnown RBP eCLIP31.23■■■□□ 2.59
HPS3-206ENST00000486530 CTTNBP2Q8WZ74 1663 aa31.19■■■□□ 2.58
Retrieved 100 of 20,778 RNA–protein pairs in 59.4 ms