RNA–Protein interactions for RNA: ENST00000486519.5

U2AF1-211, Transcript of U2 small nuclear RNA auxiliary factor 1, humanhuman

TSL 3

Gene U2AF1, Length 682 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
U2AF1-211ENST00000486519 NISCHQ9Y2I1 1504 aa39.92■■■■□ 3.98
U2AF1-211ENST00000486519 ABCC9O60706 1549 aa37.4■■■■□ 3.58
U2AF1-211ENST00000486519 CCDC180Q9P1Z9 1646 aa36.26■■■■□ 3.4
U2AF1-211ENST00000486519 DNAJC5BQ9UF47 199 aa36.12■■■■□ 3.37
U2AF1-211ENST00000486519 RB1CC1Q8TDY2 1594 aa34.99■■■■□ 3.19
U2AF1-211ENST00000486519 PABPN1Q86U42 306 aaKnown RBP eCLIP34.65■■■■□ 3.14
U2AF1-211ENST00000486519 UNC13AQ9UPW8 1703 aa34.47■■■■□ 3.11
U2AF1-211ENST00000486519 NACADO15069 1562 aa34.47■■■■□ 3.11
U2AF1-211ENST00000486519 BICRAQ9NZM4 1560 aa34.2■■■■□ 3.07
U2AF1-211ENST00000486519 DCAF8L2P0C7V8 631 aa34.11■■■■□ 3.05
U2AF1-211ENST00000486519 DNAJC5Q9H3Z4 198 aa33.74■■■□□ 2.99
U2AF1-211ENST00000486519 CC2D2AQ9P2K1 1620 aa33.73■■■□□ 2.99
U2AF1-211ENST00000486519 CECR2Q9BXF3 1484 aa33.72■■■□□ 2.99
U2AF1-211ENST00000486519 MYO15BQ96JP2 1530 aa33.58■■■□□ 2.97
U2AF1-211ENST00000486519 EIF4G1Q04637 1599 aaKnown RBP33.35■■■□□ 2.93
U2AF1-211ENST00000486519 SHROOM4Q9ULL8 1493 aa33.31■■■□□ 2.92
U2AF1-211ENST00000486519 SCRIBQ14160 1630 aa33.1■■■□□ 2.89
U2AF1-211ENST00000486519 ZCCHC6Q5VYS8 1495 aaKnown RBP32.87■■■□□ 2.85
U2AF1-211ENST00000486519 DCAF1Q9Y4B6 1507 aa32.81■■■□□ 2.84
U2AF1-211ENST00000486519 CUX2O14529 1486 aa32.51■■■□□ 2.79
U2AF1-211ENST00000486519 ERCC6Q03468 1493 aa32.23■■■□□ 2.75
U2AF1-211ENST00000486519 NESP48681 1621 aa31.89■■■□□ 2.7
U2AF1-211ENST00000486519 TRIM41Q8WV44 630 aa31.88■■■□□ 2.69
U2AF1-211ENST00000486519 NCAPD3P42695 1498 aa31.85■■■□□ 2.69
U2AF1-211ENST00000486519 THOC2Q8NI27 1593 aaKnown RBP31.75■■■□□ 2.67
U2AF1-211ENST00000486519 ATAD2BQ9ULI0 1458 aa31.67■■■□□ 2.66
U2AF1-211ENST00000486519 HMGXB3Q12766 1538 aa31.54■■■□□ 2.64
U2AF1-211ENST00000486519 SMARCA2P51531 1590 aa31.49■■■□□ 2.63
U2AF1-211ENST00000486519 KIF21AQ7Z4S6 1674 aa31.45■■■□□ 2.63
U2AF1-211ENST00000486519 SMARCA4P51532 1647 aa31.42■■■□□ 2.62
U2AF1-211ENST00000486519 LAMC3Q9Y6N6 1575 aa31.3■■■□□ 2.6
U2AF1-211ENST00000486519 BAZ1BQ9UIG0 1483 aaKnown RBP31.26■■■□□ 2.59
U2AF1-211ENST00000486519 PDS5BQ9NTI5 1447 aa31.08■■■□□ 2.57
U2AF1-211ENST00000486519 BAZ1AQ9NRL2 1556 aaPredicted RBP31.08■■■□□ 2.57
U2AF1-211ENST00000486519 PEG3Q9GZU2 1588 aa31.05■■■□□ 2.56
U2AF1-211ENST00000486519 WDR62O43379 1518 aa30.98■■■□□ 2.55
U2AF1-211ENST00000486519 MRC2Q9UBG0 1479 aa30.98■■■□□ 2.55
U2AF1-211ENST00000486519 MROH2BQ7Z745 1585 aa30.84■■■□□ 2.53
U2AF1-211ENST00000486519 CADPSQ9ULU8 1353 aa30.82■■■□□ 2.52
U2AF1-211ENST00000486519 OSCARQ8IYS5 282 aa30.8■■■□□ 2.52
U2AF1-211ENST00000486519 RIMBP3CA6NJZ7 1639 aa30.74■■■□□ 2.51
U2AF1-211ENST00000486519 RIMBP3BA6NNM3 1639 aa30.74■■■□□ 2.51
U2AF1-211ENST00000486519 RIMBP3Q9UFD9 1639 aa30.74■■■□□ 2.51
U2AF1-211ENST00000486519 CEP164Q9UPV0 1460 aa30.63■■■□□ 2.49
U2AF1-211ENST00000486519 FANCD2Q9BXW9 1451 aa30.53■■■□□ 2.48
U2AF1-211ENST00000486519 ARHGEF11O15085 1522 aa30.47■■■□□ 2.47
U2AF1-211ENST00000486519 WIZO95785 1651 aa30.46■■■□□ 2.47
U2AF1-211ENST00000486519 URB2Q14146 1524 aaKnown RBP30.44■■■□□ 2.46
U2AF1-211ENST00000486519 CFTRP13569 1480 aa30.28■■■□□ 2.44
U2AF1-211ENST00000486519 ZNF608Q9ULD9 1512 aaPredicted RBP30.27■■■□□ 2.44
U2AF1-211ENST00000486519 CYB5RLQ6IPT4 315 aa30.25■■■□□ 2.43
U2AF1-211ENST00000486519 TRHP20396 242 aaPredicted RBP30.21■■■□□ 2.43
U2AF1-211ENST00000486519 ARAP1Q96P48 1450 aa30.14■■■□□ 2.42
U2AF1-211ENST00000486519 CHD1O14646 1710 aa30.05■■■□□ 2.4
U2AF1-211ENST00000486519 AEBP2Q6ZN18 517 aaPredicted RBP30.03■■■□□ 2.4
U2AF1-211ENST00000486519 IFT140Q96RY7 1462 aa30.03■■■□□ 2.4
U2AF1-211ENST00000486519 EIF4G3O43432 1585 aaKnown RBP30.01■■■□□ 2.39
U2AF1-211ENST00000486519 PRDM2Q13029 1718 aa29.99■■■□□ 2.39
U2AF1-211ENST00000486519 TOP2AP11388 1531 aaKnown RBP29.87■■■□□ 2.37
U2AF1-211ENST00000486519 TOPBP1Q92547 1522 aa29.87■■■□□ 2.37
U2AF1-211ENST00000486519 AQRO60306 1485 aaKnown RBP eCLIP29.8■■■□□ 2.36
U2AF1-211ENST00000486519 RSF1Q96T23 1441 aaPredicted RBP29.79■■■□□ 2.36
U2AF1-211ENST00000486519 TARBP1Q13395 1621 aaKnown RBP29.74■■■□□ 2.35
U2AF1-211ENST00000486519 FBLN2P98095 1184 aa29.72■■■□□ 2.35
U2AF1-211ENST00000486519 DNMBPQ6XZF7 1577 aa29.64■■■□□ 2.33
U2AF1-211ENST00000486519 CLASP1Q7Z460 1538 aa29.61■■■□□ 2.33
U2AF1-211ENST00000486519 CCDC88BA6NC98 1476 aa29.58■■■□□ 2.33
U2AF1-211ENST00000486519 ABCC8Q09428 1581 aa29.53■■■□□ 2.32
U2AF1-211ENST00000486519 POLA1P09884 1462 aaPredicted RBP29.5■■■□□ 2.31
U2AF1-211ENST00000486519 RAD54L2Q9Y4B4 1467 aa29.48■■■□□ 2.31
U2AF1-211ENST00000486519 SNAPC4Q5SXM2 1469 aa29.46■■■□□ 2.31
U2AF1-211ENST00000486519 TDRD9Q8NDG6 1382 aaKnown RBP29.42■■■□□ 2.3
U2AF1-211ENST00000486519 SYNJ1O43426 1573 aa29.38■■■□□ 2.29
U2AF1-211ENST00000486519 GAPVD1Q14C86 1478 aa29.3■■■□□ 2.28
U2AF1-211ENST00000486519 SOGA1O94964 1423 aa29.28■■■□□ 2.28
U2AF1-211ENST00000486519 CHMP7Q8WUX9 453 aaPredicted RBP29.26■■■□□ 2.27
U2AF1-211ENST00000486519 MAGI1Q96QZ7 1491 aaPredicted RBP29.22■■■□□ 2.27
U2AF1-211ENST00000486519 ERCC6L2Q5T890 1561 aa29.21■■■□□ 2.27
U2AF1-211ENST00000486519 FGD5Q6ZNL6 1462 aa29.17■■■□□ 2.26
U2AF1-211ENST00000486519 SYNJ2O15056 1496 aa29.17■■■□□ 2.26
U2AF1-211ENST00000486519 WDR97A6NE52 1622 aa29.16■■■□□ 2.26
U2AF1-211ENST00000486519 GRIN2BQ13224 1484 aa29.13■■■□□ 2.25
U2AF1-211ENST00000486519 KIF13AQ9H1H9 1805 aa29.1■■■□□ 2.25
U2AF1-211ENST00000486519 PBRM1Q86U86 1689 aa29.1■■■□□ 2.25
U2AF1-211ENST00000486519 ILDR1Q86SU0 546 aaPredicted RBP29.05■■■□□ 2.24
U2AF1-211ENST00000486519 CUX1P39880 1505 aa29.03■■■□□ 2.24
U2AF1-211ENST00000486519 CEP170Q5SW79 1584 aa28.92■■■□□ 2.22
U2AF1-211ENST00000486519 ABCA5Q8WWZ7 1642 aa28.87■■■□□ 2.21
U2AF1-211ENST00000486519 KDM4FA0A1W2PPD8 638 aa28.85■■■□□ 2.21
U2AF1-211ENST00000486519 GRIN2AQ12879 1464 aa28.8■■■□□ 2.2
U2AF1-211ENST00000486519 SHROOM2Q13796 1616 aa28.8■■■□□ 2.2
U2AF1-211ENST00000486519 NUP160Q12769 1436 aa28.75■■■□□ 2.19
U2AF1-211ENST00000486519 ABCA10Q8WWZ4 1543 aa28.72■■■□□ 2.19
U2AF1-211ENST00000486519 ADAMTS12P58397 1594 aa28.71■■■□□ 2.19
U2AF1-211ENST00000486519 FAM69CQ0P6D2 419 aa28.64■■■□□ 2.18
U2AF1-211ENST00000486519 ABCC10Q5T3U5 1492 aa28.64■■■□□ 2.17
U2AF1-211ENST00000486519 DIP2BQ9P265 1576 aa28.62■■■□□ 2.17
U2AF1-211ENST00000486519 KDM6BO15054 1643 aa28.61■■■□□ 2.17
U2AF1-211ENST00000486519 TSPOAP1O95153 1857 aa28.57■■■□□ 2.16
U2AF1-211ENST00000486519 PRG4Q92954 1404 aaPredicted RBP28.54■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 96.4 ms