RNA–Protein interactions for RNA: ENST00000486461.1

PDZD11-204, Transcript of PDZ domain containing 11, humanhuman

TSL 3

Gene PDZD11, Length 416 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDZD11-204ENST00000486461 NISCHQ9Y2I1 1504 aa15.63■□□□□ 0.09
PDZD11-204ENST00000486461 ABCC9O60706 1549 aa14.92□□□□□ -0.02
PDZD11-204ENST00000486461 DNAJC5BQ9UF47 199 aa14.53□□□□□ -0.08
PDZD11-204ENST00000486461 CCDC180Q9P1Z9 1646 aa14.29□□□□□ -0.12
PDZD11-204ENST00000486461 RB1CC1Q8TDY2 1594 aa13.92□□□□□ -0.18
PDZD11-204ENST00000486461 DNAJC5Q9H3Z4 198 aa13.81□□□□□ -0.2
PDZD11-204ENST00000486461 PABPN1Q86U42 306 aaKnown RBP eCLIP13.8□□□□□ -0.2
PDZD11-204ENST00000486461 NACADO15069 1562 aa13.67□□□□□ -0.22
PDZD11-204ENST00000486461 UNC13AQ9UPW8 1703 aa13.59□□□□□ -0.23
PDZD11-204ENST00000486461 DCAF8L2P0C7V8 631 aa13.53□□□□□ -0.24
PDZD11-204ENST00000486461 BICRAQ9NZM4 1560 aa13.51□□□□□ -0.25
PDZD11-204ENST00000486461 CECR2Q9BXF3 1484 aa13.5□□□□□ -0.25
PDZD11-204ENST00000486461 CC2D2AQ9P2K1 1620 aa13.43□□□□□ -0.26
PDZD11-204ENST00000486461 SHROOM4Q9ULL8 1493 aa13.28□□□□□ -0.28
PDZD11-204ENST00000486461 MYO15BQ96JP2 1530 aa13.27□□□□□ -0.29
PDZD11-204ENST00000486461 EIF4G1Q04637 1599 aaKnown RBP13.24□□□□□ -0.29
PDZD11-204ENST00000486461 CUX2O14529 1486 aa13.1□□□□□ -0.31
PDZD11-204ENST00000486461 SCRIBQ14160 1630 aa12.99□□□□□ -0.33
PDZD11-204ENST00000486461 TRIM41Q8WV44 630 aa12.97□□□□□ -0.33
PDZD11-204ENST00000486461 ERCC6Q03468 1493 aa12.94□□□□□ -0.34
PDZD11-204ENST00000486461 DCAF1Q9Y4B6 1507 aa12.87□□□□□ -0.35
PDZD11-204ENST00000486461 ZCCHC6Q5VYS8 1495 aaKnown RBP12.81□□□□□ -0.36
PDZD11-204ENST00000486461 NCAPD3P42695 1498 aa12.62□□□□□ -0.39
PDZD11-204ENST00000486461 NESP48681 1621 aa12.62□□□□□ -0.39
PDZD11-204ENST00000486461 THOC2Q8NI27 1593 aaKnown RBP12.6□□□□□ -0.39
PDZD11-204ENST00000486461 ATAD2BQ9ULI0 1458 aa12.5□□□□□ -0.41
PDZD11-204ENST00000486461 SMARCA2P51531 1590 aa12.5□□□□□ -0.41
PDZD11-204ENST00000486461 HMGXB3Q12766 1538 aa12.47□□□□□ -0.41
PDZD11-204ENST00000486461 LAMC3Q9Y6N6 1575 aa12.44□□□□□ -0.42
PDZD11-204ENST00000486461 OSCARQ8IYS5 282 aa12.44□□□□□ -0.42
PDZD11-204ENST00000486461 KIF21AQ7Z4S6 1674 aa12.44□□□□□ -0.42
PDZD11-204ENST00000486461 BAZ1AQ9NRL2 1556 aaPredicted RBP12.42□□□□□ -0.42
PDZD11-204ENST00000486461 PDS5BQ9NTI5 1447 aa12.41□□□□□ -0.42
PDZD11-204ENST00000486461 AEBP2Q6ZN18 517 aaPredicted RBP12.39□□□□□ -0.43
PDZD11-204ENST00000486461 BAZ1BQ9UIG0 1483 aaKnown RBP12.35□□□□□ -0.43
PDZD11-204ENST00000486461 MRC2Q9UBG0 1479 aa12.33□□□□□ -0.44
PDZD11-204ENST00000486461 SMARCA4P51532 1647 aa12.33□□□□□ -0.44
PDZD11-204ENST00000486461 RIMBP3CA6NJZ7 1639 aa12.3□□□□□ -0.44
PDZD11-204ENST00000486461 RIMBP3BA6NNM3 1639 aa12.3□□□□□ -0.44
PDZD11-204ENST00000486461 RIMBP3Q9UFD9 1639 aa12.3□□□□□ -0.44
PDZD11-204ENST00000486461 WDR62O43379 1518 aa12.3□□□□□ -0.44
PDZD11-204ENST00000486461 TRHP20396 242 aaPredicted RBP12.27□□□□□ -0.45
PDZD11-204ENST00000486461 CADPSQ9ULU8 1353 aa12.22□□□□□ -0.45
PDZD11-204ENST00000486461 ARHGEF11O15085 1522 aa12.21□□□□□ -0.46
PDZD11-204ENST00000486461 PEG3Q9GZU2 1588 aa12.2□□□□□ -0.46
PDZD11-204ENST00000486461 CYB5RLQ6IPT4 315 aa12.19□□□□□ -0.46
PDZD11-204ENST00000486461 CEP164Q9UPV0 1460 aa12.15□□□□□ -0.46
PDZD11-204ENST00000486461 FANCD2Q9BXW9 1451 aa12.08□□□□□ -0.47
PDZD11-204ENST00000486461 MROH2BQ7Z745 1585 aa12.04□□□□□ -0.48
PDZD11-204ENST00000486461 ARAP1Q96P48 1450 aa12.03□□□□□ -0.48
PDZD11-204ENST00000486461 URB2Q14146 1524 aaKnown RBP12.01□□□□□ -0.49
PDZD11-204ENST00000486461 ZNF608Q9ULD9 1512 aaPredicted RBP11.96□□□□□ -0.49
PDZD11-204ENST00000486461 CFTRP13569 1480 aa11.94□□□□□ -0.5
PDZD11-204ENST00000486461 IFT140Q96RY7 1462 aa11.94□□□□□ -0.5
PDZD11-204ENST00000486461 RSF1Q96T23 1441 aaPredicted RBP11.94□□□□□ -0.5
PDZD11-204ENST00000486461 ILDR1Q86SU0 546 aaPredicted RBP11.92□□□□□ -0.5
PDZD11-204ENST00000486461 CHD1O14646 1710 aa11.91□□□□□ -0.5
PDZD11-204ENST00000486461 FBLN2P98095 1184 aa11.88□□□□□ -0.51
PDZD11-204ENST00000486461 EIF4G3O43432 1585 aaKnown RBP11.86□□□□□ -0.51
PDZD11-204ENST00000486461 WIZO95785 1651 aa11.86□□□□□ -0.51
PDZD11-204ENST00000486461 AQRO60306 1485 aaKnown RBP eCLIP11.79□□□□□ -0.52
PDZD11-204ENST00000486461 TOPBP1Q92547 1522 aa11.78□□□□□ -0.52
PDZD11-204ENST00000486461 PRDM2Q13029 1718 aa11.77□□□□□ -0.52
PDZD11-204ENST00000486461 CLASP1Q7Z460 1538 aa11.74□□□□□ -0.53
PDZD11-204ENST00000486461 ABCC8Q09428 1581 aa11.73□□□□□ -0.53
PDZD11-204ENST00000486461 TARBP1Q13395 1621 aaKnown RBP11.71□□□□□ -0.54
PDZD11-204ENST00000486461 SYNJ1O43426 1573 aa11.7□□□□□ -0.54
PDZD11-204ENST00000486461 CHMP7Q8WUX9 453 aaPredicted RBP11.69□□□□□ -0.54
PDZD11-204ENST00000486461 GAPVD1Q14C86 1478 aa11.69□□□□□ -0.54
PDZD11-204ENST00000486461 DNMBPQ6XZF7 1577 aa11.68□□□□□ -0.54
PDZD11-204ENST00000486461 TOP2AP11388 1531 aaKnown RBP11.67□□□□□ -0.54
PDZD11-204ENST00000486461 SNAPC4Q5SXM2 1469 aa11.65□□□□□ -0.54
PDZD11-204ENST00000486461 KDM4FA0A1W2PPD8 638 aa11.63□□□□□ -0.55
PDZD11-204ENST00000486461 TDRD9Q8NDG6 1382 aaKnown RBP11.63□□□□□ -0.55
PDZD11-204ENST00000486461 POLA1P09884 1462 aaPredicted RBP11.62□□□□□ -0.55
PDZD11-204ENST00000486461 MAGI1Q96QZ7 1491 aaPredicted RBP11.6□□□□□ -0.55
PDZD11-204ENST00000486461 RAD54L2Q9Y4B4 1467 aa11.59□□□□□ -0.55
PDZD11-204ENST00000486461 KIF13AQ9H1H9 1805 aa11.58□□□□□ -0.56
PDZD11-204ENST00000486461 SOGA1O94964 1423 aa11.58□□□□□ -0.56
PDZD11-204ENST00000486461 SYNJ2O15056 1496 aa11.57□□□□□ -0.56
PDZD11-204ENST00000486461 WDR97A6NE52 1622 aa11.56□□□□□ -0.56
PDZD11-204ENST00000486461 CCDC88BA6NC98 1476 aa11.55□□□□□ -0.56
PDZD11-204ENST00000486461 GRIN2BQ13224 1484 aa11.54□□□□□ -0.56
PDZD11-204ENST00000486461 ERCC6L2Q5T890 1561 aa11.5□□□□□ -0.57
PDZD11-204ENST00000486461 FAM69CQ0P6D2 419 aa11.49□□□□□ -0.57
PDZD11-204ENST00000486461 KDM6BO15054 1643 aa11.46□□□□□ -0.57
PDZD11-204ENST00000486461 FGD5Q6ZNL6 1462 aa11.46□□□□□ -0.57
PDZD11-204ENST00000486461 CEP170Q5SW79 1584 aa11.45□□□□□ -0.58
PDZD11-204ENST00000486461 ABCC10Q5T3U5 1492 aa11.44□□□□□ -0.58
PDZD11-204ENST00000486461 PBRM1Q86U86 1689 aa11.43□□□□□ -0.58
PDZD11-204ENST00000486461 FBXO41Q8TF61 875 aa11.43□□□□□ -0.58
PDZD11-204ENST00000486461 HECW2Q9P2P5 1572 aa11.42□□□□□ -0.58
PDZD11-204ENST00000486461 NPM1P06748 294 aaKnown RBP eCLIP11.4□□□□□ -0.58
PDZD11-204ENST00000486461 ADGRL1O94910 1474 aa11.38□□□□□ -0.59
PDZD11-204ENST00000486461 DIP2BQ9P265 1576 aa11.38□□□□□ -0.59
PDZD11-204ENST00000486461 TSPOAP1O95153 1857 aa11.38□□□□□ -0.59
PDZD11-204ENST00000486461 GRIN2AQ12879 1464 aa11.38□□□□□ -0.59
PDZD11-204ENST00000486461 SHROOM2Q13796 1616 aa11.37□□□□□ -0.59
PDZD11-204ENST00000486461 NUP160Q12769 1436 aa11.36□□□□□ -0.59
PDZD11-204ENST00000486461 MAPKBP1O60336 1514 aa11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 105 ms