RNA–Protein interactions for RNA: ENST00000486429.1

CLDN11-206, Transcript of claudin 11, humanhuman

TSL 2

Gene CLDN11, Length 998 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN11-206ENST00000486429 NISCHQ9Y2I1 1504 aa45.06■■■■■ 4.8
CLDN11-206ENST00000486429 CCDC180Q9P1Z9 1646 aa40.27■■■■■ 4.04
CLDN11-206ENST00000486429 ABCC9O60706 1549 aa39.6■■■■□ 3.93
CLDN11-206ENST00000486429 RB1CC1Q8TDY2 1594 aa38.01■■■■□ 3.67
CLDN11-206ENST00000486429 NACADO15069 1562 aa37.88■■■■□ 3.65
CLDN11-206ENST00000486429 DCAF8L2P0C7V8 631 aa37.67■■■■□ 3.62
CLDN11-206ENST00000486429 MYO15BQ96JP2 1530 aa37.56■■■■□ 3.6
CLDN11-206ENST00000486429 ZCCHC6Q5VYS8 1495 aaKnown RBP37.51■■■■□ 3.59
CLDN11-206ENST00000486429 DCAF1Q9Y4B6 1507 aa37.29■■■■□ 3.56
CLDN11-206ENST00000486429 UNC13AQ9UPW8 1703 aa37.13■■■■□ 3.54
CLDN11-206ENST00000486429 PABPN1Q86U42 306 aaKnown RBP eCLIP36.89■■■■□ 3.5
CLDN11-206ENST00000486429 BICRAQ9NZM4 1560 aa36.84■■■■□ 3.49
CLDN11-206ENST00000486429 SCRIBQ14160 1630 aa36.7■■■■□ 3.47
CLDN11-206ENST00000486429 DNAJC5BQ9UF47 199 aa36.5■■■■□ 3.43
CLDN11-206ENST00000486429 SHROOM4Q9ULL8 1493 aa36.5■■■■□ 3.43
CLDN11-206ENST00000486429 EIF4G1Q04637 1599 aaKnown RBP35.92■■■■□ 3.34
CLDN11-206ENST00000486429 CC2D2AQ9P2K1 1620 aa35.83■■■■□ 3.33
CLDN11-206ENST00000486429 CECR2Q9BXF3 1484 aa35.62■■■■□ 3.29
CLDN11-206ENST00000486429 SMARCA4P51532 1647 aa35.06■■■■□ 3.2
CLDN11-206ENST00000486429 BAZ1AQ9NRL2 1556 aaPredicted RBP34.98■■■■□ 3.19
CLDN11-206ENST00000486429 NCAPD3P42695 1498 aa34.91■■■■□ 3.18
CLDN11-206ENST00000486429 ATAD2BQ9ULI0 1458 aa34.9■■■■□ 3.18
CLDN11-206ENST00000486429 SMARCA2P51531 1590 aa34.89■■■■□ 3.18
CLDN11-206ENST00000486429 HMGXB3Q12766 1538 aa34.78■■■■□ 3.16
CLDN11-206ENST00000486429 MROH2BQ7Z745 1585 aa34.71■■■■□ 3.15
CLDN11-206ENST00000486429 PEG3Q9GZU2 1588 aa34.71■■■■□ 3.15
CLDN11-206ENST00000486429 BAZ1BQ9UIG0 1483 aaKnown RBP34.64■■■■□ 3.14
CLDN11-206ENST00000486429 WIZO95785 1651 aa34.34■■■■□ 3.09
CLDN11-206ENST00000486429 ERCC6Q03468 1493 aa34.2■■■■□ 3.06
CLDN11-206ENST00000486429 RSF1Q96T23 1441 aaPredicted RBP34.19■■■■□ 3.06
CLDN11-206ENST00000486429 NESP48681 1621 aa34.18■■■■□ 3.06
CLDN11-206ENST00000486429 LAMC3Q9Y6N6 1575 aa34.1■■■■□ 3.05
CLDN11-206ENST00000486429 TOP2AP11388 1531 aaKnown RBP33.99■■■■□ 3.03
CLDN11-206ENST00000486429 CUX2O14529 1486 aa33.93■■■■□ 3.02
CLDN11-206ENST00000486429 CADPSQ9ULU8 1353 aa33.87■■■■□ 3.01
CLDN11-206ENST00000486429 PDS5BQ9NTI5 1447 aa33.84■■■■□ 3.01
CLDN11-206ENST00000486429 KIF21AQ7Z4S6 1674 aa33.81■■■■□ 3
CLDN11-206ENST00000486429 THOC2Q8NI27 1593 aaKnown RBP33.79■■■■□ 3
CLDN11-206ENST00000486429 CFTRP13569 1480 aa33.63■■■□□ 2.97
CLDN11-206ENST00000486429 MRC2Q9UBG0 1479 aa33.55■■■□□ 2.96
CLDN11-206ENST00000486429 CEP164Q9UPV0 1460 aa33.54■■■□□ 2.96
CLDN11-206ENST00000486429 CCDC88BA6NC98 1476 aa33.52■■■□□ 2.96
CLDN11-206ENST00000486429 FANCD2Q9BXW9 1451 aa33.52■■■□□ 2.96
CLDN11-206ENST00000486429 WDR62O43379 1518 aa33.45■■■□□ 2.95
CLDN11-206ENST00000486429 PRDM2Q13029 1718 aa33.43■■■□□ 2.94
CLDN11-206ENST00000486429 URB2Q14146 1524 aaKnown RBP33.21■■■□□ 2.91
CLDN11-206ENST00000486429 DNAJC5Q9H3Z4 198 aa33.13■■■□□ 2.89
CLDN11-206ENST00000486429 SUPT5HO00267 1087 aaKnown RBP33.06■■■□□ 2.88
CLDN11-206ENST00000486429 TOPBP1Q92547 1522 aa32.96■■■□□ 2.87
CLDN11-206ENST00000486429 ABCC8Q09428 1581 aa32.93■■■□□ 2.86
CLDN11-206ENST00000486429 DNMBPQ6XZF7 1577 aa32.92■■■□□ 2.86
CLDN11-206ENST00000486429 IFT140Q96RY7 1462 aa32.83■■■□□ 2.85
CLDN11-206ENST00000486429 ZNF608Q9ULD9 1512 aaPredicted RBP32.68■■■□□ 2.82
CLDN11-206ENST00000486429 POLA1P09884 1462 aaPredicted RBP32.66■■■□□ 2.82
CLDN11-206ENST00000486429 TARBP1Q13395 1621 aaKnown RBP32.62■■■□□ 2.81
CLDN11-206ENST00000486429 EIF4G3O43432 1585 aaKnown RBP32.62■■■□□ 2.81
CLDN11-206ENST00000486429 CUX1P39880 1505 aa32.6■■■□□ 2.81
CLDN11-206ENST00000486429 FGD5Q6ZNL6 1462 aa32.54■■■□□ 2.8
CLDN11-206ENST00000486429 RAD54L2Q9Y4B4 1467 aa32.49■■■□□ 2.79
CLDN11-206ENST00000486429 SOGA1O94964 1423 aa32.47■■■□□ 2.79
CLDN11-206ENST00000486429 AQRO60306 1485 aaKnown RBP eCLIP32.43■■■□□ 2.78
CLDN11-206ENST00000486429 WDR97A6NE52 1622 aa32.4■■■□□ 2.78
CLDN11-206ENST00000486429 OSCARQ8IYS5 282 aa32.38■■■□□ 2.77
CLDN11-206ENST00000486429 TDRD9Q8NDG6 1382 aaKnown RBP32.32■■■□□ 2.77
CLDN11-206ENST00000486429 WRNQ14191 1432 aaPredicted RBP eCLIP32.28■■■□□ 2.76
CLDN11-206ENST00000486429 BIVM-ERCC5R4GMW8 1640 aa32.27■■■□□ 2.76
CLDN11-206ENST00000486429 TOP2BQ02880 1626 aa32.26■■■□□ 2.75
CLDN11-206ENST00000486429 CHD1O14646 1710 aa32.24■■■□□ 2.75
CLDN11-206ENST00000486429 SYNJ1O43426 1573 aa32.24■■■□□ 2.75
CLDN11-206ENST00000486429 ABCA10Q8WWZ4 1543 aa32.21■■■□□ 2.75
CLDN11-206ENST00000486429 SNAPC4Q5SXM2 1469 aa32.19■■■□□ 2.74
CLDN11-206ENST00000486429 GRIN2BQ13224 1484 aa32.18■■■□□ 2.74
CLDN11-206ENST00000486429 MAGI1Q96QZ7 1491 aaPredicted RBP32.14■■■□□ 2.74
CLDN11-206ENST00000486429 ABCA5Q8WWZ7 1642 aa32.14■■■□□ 2.74
CLDN11-206ENST00000486429 PBRM1Q86U86 1689 aa32.14■■■□□ 2.74
CLDN11-206ENST00000486429 GAPVD1Q14C86 1478 aa32.13■■■□□ 2.73
CLDN11-206ENST00000486429 FBLN2P98095 1184 aa32.09■■■□□ 2.73
CLDN11-206ENST00000486429 SYNJ2O15056 1496 aa32.01■■■□□ 2.71
CLDN11-206ENST00000486429 RIMBP3CA6NJZ7 1639 aa31.99■■■□□ 2.71
CLDN11-206ENST00000486429 RIMBP3BA6NNM3 1639 aa31.99■■■□□ 2.71
CLDN11-206ENST00000486429 RIMBP3Q9UFD9 1639 aa31.99■■■□□ 2.71
CLDN11-206ENST00000486429 CHMP7Q8WUX9 453 aaPredicted RBP31.96■■■□□ 2.71
CLDN11-206ENST00000486429 TRIM41Q8WV44 630 aa31.95■■■□□ 2.71
CLDN11-206ENST00000486429 ARHGEF11O15085 1522 aa31.95■■■□□ 2.7
CLDN11-206ENST00000486429 CLASP1Q7Z460 1538 aa31.88■■■□□ 2.69
CLDN11-206ENST00000486429 ADAMTS12P58397 1594 aa31.88■■■□□ 2.69
CLDN11-206ENST00000486429 ERICH3Q5RHP9 1530 aa31.83■■■□□ 2.69
CLDN11-206ENST00000486429 GRIN2AQ12879 1464 aa31.78■■■□□ 2.68
CLDN11-206ENST00000486429 FHAD1B1AJZ9 1412 aa31.75■■■□□ 2.67
CLDN11-206ENST00000486429 ARAP1Q96P48 1450 aa31.67■■■□□ 2.66
CLDN11-206ENST00000486429 CEP170Q5SW79 1584 aa31.64■■■□□ 2.65
CLDN11-206ENST00000486429 NUP160Q12769 1436 aa31.63■■■□□ 2.65
CLDN11-206ENST00000486429 KIF27Q86VH2 1401 aa31.63■■■□□ 2.65
CLDN11-206ENST00000486429 CYB5RLQ6IPT4 315 aa31.57■■■□□ 2.64
CLDN11-206ENST00000486429 CUL7Q14999 1698 aa31.52■■■□□ 2.64
CLDN11-206ENST00000486429 IGF1RP08069 1367 aa31.46■■■□□ 2.63
CLDN11-206ENST00000486429 SHROOM2Q13796 1616 aa31.46■■■□□ 2.63
CLDN11-206ENST00000486429 RUSC2Q8N2Y8 1516 aa31.42■■■□□ 2.62
CLDN11-206ENST00000486429 ERCC6L2Q5T890 1561 aa31.39■■■□□ 2.61
CLDN11-206ENST00000486429 CARMIL1Q5VZK9 1371 aa31.3■■■□□ 2.6
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms