RNA–Protein interactions for RNA: ENST00000486361.5

LIMK1-206, Transcript of LIM domain kinase 1, humanhuman

TSL 4

Gene LIMK1, Length 569 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-206ENST00000486361 NISCHQ9Y2I1 1504 aa48.01■■■■■ 5.28
LIMK1-206ENST00000486361 CCDC180Q9P1Z9 1646 aa42.55■■■■■ 4.4
LIMK1-206ENST00000486361 ABCC9O60706 1549 aa41.91■■■■■ 4.3
LIMK1-206ENST00000486361 DCAF8L2P0C7V8 631 aa40.38■■■■■ 4.05
LIMK1-206ENST00000486361 RB1CC1Q8TDY2 1594 aa40.14■■■■■ 4.02
LIMK1-206ENST00000486361 NACADO15069 1562 aa40.08■■■■■ 4.01
LIMK1-206ENST00000486361 ZCCHC6Q5VYS8 1495 aaKnown RBP39.95■■■■□ 3.99
LIMK1-206ENST00000486361 MYO15BQ96JP2 1530 aa39.75■■■■□ 3.95
LIMK1-206ENST00000486361 DCAF1Q9Y4B6 1507 aa39.6■■■■□ 3.93
LIMK1-206ENST00000486361 PABPN1Q86U42 306 aaKnown RBP eCLIP39.26■■■■□ 3.88
LIMK1-206ENST00000486361 UNC13AQ9UPW8 1703 aa39.23■■■■□ 3.87
LIMK1-206ENST00000486361 SCRIBQ14160 1630 aa39■■■■□ 3.83
LIMK1-206ENST00000486361 BICRAQ9NZM4 1560 aa38.99■■■■□ 3.83
LIMK1-206ENST00000486361 DNAJC5BQ9UF47 199 aa38.6■■■■□ 3.77
LIMK1-206ENST00000486361 SHROOM4Q9ULL8 1493 aa38.39■■■■□ 3.74
LIMK1-206ENST00000486361 EIF4G1Q04637 1599 aaKnown RBP37.95■■■■□ 3.67
LIMK1-206ENST00000486361 CC2D2AQ9P2K1 1620 aa37.83■■■■□ 3.65
LIMK1-206ENST00000486361 CECR2Q9BXF3 1484 aa37.61■■■■□ 3.61
LIMK1-206ENST00000486361 SMARCA4P51532 1647 aa37.23■■■■□ 3.55
LIMK1-206ENST00000486361 BAZ1AQ9NRL2 1556 aaPredicted RBP37.17■■■■□ 3.54
LIMK1-206ENST00000486361 ATAD2BQ9ULI0 1458 aa37.08■■■■□ 3.53
LIMK1-206ENST00000486361 MROH2BQ7Z745 1585 aa37.05■■■■□ 3.52
LIMK1-206ENST00000486361 NCAPD3P42695 1498 aa37.03■■■■□ 3.52
LIMK1-206ENST00000486361 SMARCA2P51531 1590 aa36.95■■■■□ 3.51
LIMK1-206ENST00000486361 PEG3Q9GZU2 1588 aa36.8■■■■□ 3.48
LIMK1-206ENST00000486361 HMGXB3Q12766 1538 aa36.78■■■■□ 3.48
LIMK1-206ENST00000486361 BAZ1BQ9UIG0 1483 aaKnown RBP36.76■■■■□ 3.48
LIMK1-206ENST00000486361 WIZO95785 1651 aa36.64■■■■□ 3.46
LIMK1-206ENST00000486361 RSF1Q96T23 1441 aaPredicted RBP36.62■■■■□ 3.45
LIMK1-206ENST00000486361 NESP48681 1621 aa36.26■■■■□ 3.4
LIMK1-206ENST00000486361 TOP2AP11388 1531 aaKnown RBP36.18■■■■□ 3.38
LIMK1-206ENST00000486361 ERCC6Q03468 1493 aa36.07■■■■□ 3.37
LIMK1-206ENST00000486361 LAMC3Q9Y6N6 1575 aa36.01■■■■□ 3.35
LIMK1-206ENST00000486361 CADPSQ9ULU8 1353 aa36■■■■□ 3.35
LIMK1-206ENST00000486361 SUPT5HO00267 1087 aaKnown RBP35.85■■■■□ 3.33
LIMK1-206ENST00000486361 CCDC88BA6NC98 1476 aa35.85■■■■□ 3.33
LIMK1-206ENST00000486361 PDS5BQ9NTI5 1447 aa35.83■■■■□ 3.33
LIMK1-206ENST00000486361 CFTRP13569 1480 aa35.74■■■■□ 3.31
LIMK1-206ENST00000486361 KIF21AQ7Z4S6 1674 aa35.73■■■■□ 3.31
LIMK1-206ENST00000486361 CUX2O14529 1486 aa35.6■■■■□ 3.29
LIMK1-206ENST00000486361 THOC2Q8NI27 1593 aaKnown RBP35.59■■■■□ 3.29
LIMK1-206ENST00000486361 FANCD2Q9BXW9 1451 aa35.58■■■■□ 3.29
LIMK1-206ENST00000486361 CEP164Q9UPV0 1460 aa35.5■■■■□ 3.27
LIMK1-206ENST00000486361 MRC2Q9UBG0 1479 aa35.47■■■■□ 3.27
LIMK1-206ENST00000486361 PRDM2Q13029 1718 aa35.33■■■■□ 3.25
LIMK1-206ENST00000486361 WDR62O43379 1518 aa35.31■■■■□ 3.24
LIMK1-206ENST00000486361 URB2Q14146 1524 aaKnown RBP35.24■■■■□ 3.23
LIMK1-206ENST00000486361 TOPBP1Q92547 1522 aa35■■■■□ 3.19
LIMK1-206ENST00000486361 ABCC8Q09428 1581 aa34.91■■■■□ 3.18
LIMK1-206ENST00000486361 DNMBPQ6XZF7 1577 aa34.91■■■■□ 3.18
LIMK1-206ENST00000486361 IFT140Q96RY7 1462 aa34.76■■■■□ 3.15
LIMK1-206ENST00000486361 CUX1P39880 1505 aa34.75■■■■□ 3.15
LIMK1-206ENST00000486361 POLA1P09884 1462 aaPredicted RBP34.71■■■■□ 3.15
LIMK1-206ENST00000486361 DNAJC5Q9H3Z4 198 aa34.7■■■■□ 3.15
LIMK1-206ENST00000486361 ZNF608Q9ULD9 1512 aaPredicted RBP34.7■■■■□ 3.14
LIMK1-206ENST00000486361 RAD54L2Q9Y4B4 1467 aa34.65■■■■□ 3.14
LIMK1-206ENST00000486361 FGD5Q6ZNL6 1462 aa34.64■■■■□ 3.14
LIMK1-206ENST00000486361 SOGA1O94964 1423 aa34.61■■■■□ 3.13
LIMK1-206ENST00000486361 TARBP1Q13395 1621 aaKnown RBP34.59■■■■□ 3.13
LIMK1-206ENST00000486361 AQRO60306 1485 aaKnown RBP eCLIP34.52■■■■□ 3.12
LIMK1-206ENST00000486361 WRNQ14191 1432 aaPredicted RBP eCLIP34.51■■■■□ 3.12
LIMK1-206ENST00000486361 TDRD9Q8NDG6 1382 aaKnown RBP34.48■■■■□ 3.11
LIMK1-206ENST00000486361 EIF4G3O43432 1585 aaKnown RBP34.45■■■■□ 3.11
LIMK1-206ENST00000486361 SYNJ1O43426 1573 aa34.42■■■■□ 3.1
LIMK1-206ENST00000486361 TOP2BQ02880 1626 aa34.37■■■■□ 3.09
LIMK1-206ENST00000486361 BIVM-ERCC5R4GMW8 1640 aa34.34■■■■□ 3.09
LIMK1-206ENST00000486361 OSCARQ8IYS5 282 aa34.27■■■■□ 3.08
LIMK1-206ENST00000486361 ABCA10Q8WWZ4 1543 aa34.25■■■■□ 3.07
LIMK1-206ENST00000486361 WDR97A6NE52 1622 aa34.24■■■■□ 3.07
LIMK1-206ENST00000486361 FBLN2P98095 1184 aa34.19■■■■□ 3.06
LIMK1-206ENST00000486361 GAPVD1Q14C86 1478 aa34.17■■■■□ 3.06
LIMK1-206ENST00000486361 GRIN2BQ13224 1484 aa34.14■■■■□ 3.06
LIMK1-206ENST00000486361 SNAPC4Q5SXM2 1469 aa34.14■■■■□ 3.06
LIMK1-206ENST00000486361 ABCA5Q8WWZ7 1642 aa34.08■■■■□ 3.05
LIMK1-206ENST00000486361 CHD1O14646 1710 aa34.03■■■■□ 3.04
LIMK1-206ENST00000486361 PBRM1Q86U86 1689 aa34.03■■■■□ 3.04
LIMK1-206ENST00000486361 CHMP7Q8WUX9 453 aaPredicted RBP34.02■■■■□ 3.04
LIMK1-206ENST00000486361 MAGI1Q96QZ7 1491 aaPredicted RBP34.01■■■■□ 3.04
LIMK1-206ENST00000486361 SYNJ2O15056 1496 aa33.92■■■■□ 3.02
LIMK1-206ENST00000486361 ERICH3Q5RHP9 1530 aa33.8■■■■□ 3
LIMK1-206ENST00000486361 TRIM41Q8WV44 630 aa33.78■■■■□ 3
LIMK1-206ENST00000486361 KIF27Q86VH2 1401 aa33.78■■■■□ 3
LIMK1-206ENST00000486361 ADAMTS12P58397 1594 aa33.77■■■■□ 3
LIMK1-206ENST00000486361 FHAD1B1AJZ9 1412 aa33.76■■■□□ 2.99
LIMK1-206ENST00000486361 IGF1RP08069 1367 aa33.71■■■□□ 2.99
LIMK1-206ENST00000486361 GRIN2AQ12879 1464 aa33.7■■■□□ 2.99
LIMK1-206ENST00000486361 CLASP1Q7Z460 1538 aa33.65■■■□□ 2.98
LIMK1-206ENST00000486361 RIMBP3CA6NJZ7 1639 aa33.64■■■□□ 2.98
LIMK1-206ENST00000486361 RIMBP3BA6NNM3 1639 aa33.64■■■□□ 2.98
LIMK1-206ENST00000486361 RIMBP3Q9UFD9 1639 aa33.64■■■□□ 2.98
LIMK1-206ENST00000486361 ARHGEF11O15085 1522 aa33.64■■■□□ 2.98
LIMK1-206ENST00000486361 RUSC2Q8N2Y8 1516 aa33.59■■■□□ 2.97
LIMK1-206ENST00000486361 CEP170Q5SW79 1584 aa33.55■■■□□ 2.96
LIMK1-206ENST00000486361 NUP160Q12769 1436 aa33.55■■■□□ 2.96
LIMK1-206ENST00000486361 CARMIL1Q5VZK9 1371 aa33.5■■■□□ 2.95
LIMK1-206ENST00000486361 CYB5RLQ6IPT4 315 aa33.48■■■□□ 2.95
LIMK1-206ENST00000486361 CUL7Q14999 1698 aa33.45■■■□□ 2.95
LIMK1-206ENST00000486361 ARAP1Q96P48 1450 aa33.39■■■□□ 2.94
LIMK1-206ENST00000486361 CHIC1Q5VXU3 224 aa33.39■■■□□ 2.94
LIMK1-206ENST00000486361 JPH4Q96JJ6 628 aa33.32■■■□□ 2.92
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms