RNA–Protein interactions for RNA: ENST00000486194.1

HLA-F-228, Transcript of major histocompatibility complex, class I, F, humanhuman

Gene HLA-F, Length 587 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-F-228ENST00000486194 NISCHQ9Y2I1 1504 aa54.15■■■■■ 6.26
HLA-F-228ENST00000486194 CCDC180Q9P1Z9 1646 aa48.39■■■■■ 5.34
HLA-F-228ENST00000486194 ABCC9O60706 1549 aa47.85■■■■■ 5.25
HLA-F-228ENST00000486194 RB1CC1Q8TDY2 1594 aa45.84■■■■■ 4.93
HLA-F-228ENST00000486194 NACADO15069 1562 aa45.67■■■■■ 4.9
HLA-F-228ENST00000486194 DCAF8L2P0C7V8 631 aa45.5■■■■■ 4.87
HLA-F-228ENST00000486194 MYO15BQ96JP2 1530 aa45.24■■■■■ 4.83
HLA-F-228ENST00000486194 ZCCHC6Q5VYS8 1495 aaKnown RBP44.99■■■■■ 4.79
HLA-F-228ENST00000486194 DCAF1Q9Y4B6 1507 aa44.82■■■■■ 4.77
HLA-F-228ENST00000486194 UNC13AQ9UPW8 1703 aa44.64■■■■■ 4.74
HLA-F-228ENST00000486194 PABPN1Q86U42 306 aaKnown RBP eCLIP44.62■■■■■ 4.73
HLA-F-228ENST00000486194 BICRAQ9NZM4 1560 aa44.38■■■■■ 4.69
HLA-F-228ENST00000486194 DNAJC5BQ9UF47 199 aa44.36■■■■■ 4.69
HLA-F-228ENST00000486194 SCRIBQ14160 1630 aa44.06■■■■■ 4.64
HLA-F-228ENST00000486194 SHROOM4Q9ULL8 1493 aa44.02■■■■■ 4.64
HLA-F-228ENST00000486194 EIF4G1Q04637 1599 aaKnown RBP43.3■■■■■ 4.52
HLA-F-228ENST00000486194 CC2D2AQ9P2K1 1620 aa43.25■■■■■ 4.51
HLA-F-228ENST00000486194 CECR2Q9BXF3 1484 aa43.09■■■■■ 4.49
HLA-F-228ENST00000486194 NCAPD3P42695 1498 aa42.14■■■■■ 4.34
HLA-F-228ENST00000486194 SMARCA4P51532 1647 aa42.12■■■■■ 4.33
HLA-F-228ENST00000486194 ATAD2BQ9ULI0 1458 aa42.05■■■■■ 4.32
HLA-F-228ENST00000486194 BAZ1AQ9NRL2 1556 aaPredicted RBP42.05■■■■■ 4.32
HLA-F-228ENST00000486194 SMARCA2P51531 1590 aa42.01■■■■■ 4.32
HLA-F-228ENST00000486194 HMGXB3Q12766 1538 aa41.88■■■■■ 4.29
HLA-F-228ENST00000486194 PEG3Q9GZU2 1588 aa41.74■■■■■ 4.27
HLA-F-228ENST00000486194 BAZ1BQ9UIG0 1483 aaKnown RBP41.7■■■■■ 4.27
HLA-F-228ENST00000486194 MROH2BQ7Z745 1585 aa41.68■■■■■ 4.26
HLA-F-228ENST00000486194 ERCC6Q03468 1493 aa41.35■■■■■ 4.21
HLA-F-228ENST00000486194 NESP48681 1621 aa41.21■■■■■ 4.19
HLA-F-228ENST00000486194 WIZO95785 1651 aa41.19■■■■■ 4.18
HLA-F-228ENST00000486194 CUX2O14529 1486 aa41.12■■■■■ 4.17
HLA-F-228ENST00000486194 LAMC3Q9Y6N6 1575 aa41.12■■■■■ 4.17
HLA-F-228ENST00000486194 RSF1Q96T23 1441 aaPredicted RBP41.04■■■■■ 4.16
HLA-F-228ENST00000486194 PDS5BQ9NTI5 1447 aa40.9■■■■■ 4.14
HLA-F-228ENST00000486194 CADPSQ9ULU8 1353 aa40.88■■■■■ 4.14
HLA-F-228ENST00000486194 TOP2AP11388 1531 aaKnown RBP40.78■■■■■ 4.12
HLA-F-228ENST00000486194 THOC2Q8NI27 1593 aaKnown RBP40.72■■■■■ 4.11
HLA-F-228ENST00000486194 KIF21AQ7Z4S6 1674 aa40.69■■■■■ 4.1
HLA-F-228ENST00000486194 CFTRP13569 1480 aa40.51■■■■■ 4.08
HLA-F-228ENST00000486194 DNAJC5Q9H3Z4 198 aa40.47■■■■■ 4.07
HLA-F-228ENST00000486194 MRC2Q9UBG0 1479 aa40.46■■■■■ 4.07
HLA-F-228ENST00000486194 CEP164Q9UPV0 1460 aa40.42■■■■■ 4.06
HLA-F-228ENST00000486194 FANCD2Q9BXW9 1451 aa40.4■■■■■ 4.06
HLA-F-228ENST00000486194 WDR62O43379 1518 aa40.32■■■■■ 4.05
HLA-F-228ENST00000486194 CCDC88BA6NC98 1476 aa40.29■■■■■ 4.04
HLA-F-228ENST00000486194 PRDM2Q13029 1718 aa40.09■■■■■ 4.01
HLA-F-228ENST00000486194 URB2Q14146 1524 aaKnown RBP39.99■■■■□ 3.99
HLA-F-228ENST00000486194 ABCC8Q09428 1581 aa39.73■■■■□ 3.95
HLA-F-228ENST00000486194 TOPBP1Q92547 1522 aa39.68■■■■□ 3.94
HLA-F-228ENST00000486194 SUPT5HO00267 1087 aaKnown RBP39.61■■■■□ 3.93
HLA-F-228ENST00000486194 IFT140Q96RY7 1462 aa39.6■■■■□ 3.93
HLA-F-228ENST00000486194 DNMBPQ6XZF7 1577 aa39.59■■■■□ 3.93
HLA-F-228ENST00000486194 ZNF608Q9ULD9 1512 aaPredicted RBP39.4■■■■□ 3.9
HLA-F-228ENST00000486194 OSCARQ8IYS5 282 aa39.33■■■■□ 3.89
HLA-F-228ENST00000486194 POLA1P09884 1462 aaPredicted RBP39.3■■■■□ 3.88
HLA-F-228ENST00000486194 TARBP1Q13395 1621 aaKnown RBP39.25■■■■□ 3.87
HLA-F-228ENST00000486194 EIF4G3O43432 1585 aaKnown RBP39.23■■■■□ 3.87
HLA-F-228ENST00000486194 SOGA1O94964 1423 aa39.16■■■■□ 3.86
HLA-F-228ENST00000486194 CUX1P39880 1505 aa39.14■■■■□ 3.86
HLA-F-228ENST00000486194 AQRO60306 1485 aaKnown RBP eCLIP39.12■■■■□ 3.85
HLA-F-228ENST00000486194 FGD5Q6ZNL6 1462 aa39.12■■■■□ 3.85
HLA-F-228ENST00000486194 RAD54L2Q9Y4B4 1467 aa39.11■■■■□ 3.85
HLA-F-228ENST00000486194 WDR97A6NE52 1622 aa39■■■■□ 3.83
HLA-F-228ENST00000486194 TDRD9Q8NDG6 1382 aaKnown RBP38.98■■■■□ 3.83
HLA-F-228ENST00000486194 TRIM41Q8WV44 630 aa38.89■■■■□ 3.82
HLA-F-228ENST00000486194 FBLN2P98095 1184 aa38.82■■■■□ 3.8
HLA-F-228ENST00000486194 CHD1O14646 1710 aa38.8■■■■□ 3.8
HLA-F-228ENST00000486194 GRIN2BQ13224 1484 aa38.79■■■■□ 3.8
HLA-F-228ENST00000486194 SNAPC4Q5SXM2 1469 aa38.76■■■■□ 3.8
HLA-F-228ENST00000486194 WRNQ14191 1432 aaPredicted RBP eCLIP38.75■■■■□ 3.79
HLA-F-228ENST00000486194 ABCA10Q8WWZ4 1543 aa38.74■■■■□ 3.79
HLA-F-228ENST00000486194 MAGI1Q96QZ7 1491 aaPredicted RBP38.74■■■■□ 3.79
HLA-F-228ENST00000486194 GAPVD1Q14C86 1478 aa38.7■■■■□ 3.79
HLA-F-228ENST00000486194 TOP2BQ02880 1626 aa38.69■■■■□ 3.78
HLA-F-228ENST00000486194 BIVM-ERCC5R4GMW8 1640 aa38.67■■■■□ 3.78
HLA-F-228ENST00000486194 RIMBP3CA6NJZ7 1639 aa38.66■■■■□ 3.78
HLA-F-228ENST00000486194 RIMBP3BA6NNM3 1639 aa38.66■■■■□ 3.78
HLA-F-228ENST00000486194 RIMBP3Q9UFD9 1639 aa38.66■■■■□ 3.78
HLA-F-228ENST00000486194 CHMP7Q8WUX9 453 aaPredicted RBP38.65■■■■□ 3.78
HLA-F-228ENST00000486194 ARHGEF11O15085 1522 aa38.63■■■■□ 3.78
HLA-F-228ENST00000486194 SYNJ1O43426 1573 aa38.61■■■■□ 3.77
HLA-F-228ENST00000486194 ABCA5Q8WWZ7 1642 aa38.6■■■■□ 3.77
HLA-F-228ENST00000486194 SYNJ2O15056 1496 aa38.59■■■■□ 3.77
HLA-F-228ENST00000486194 PBRM1Q86U86 1689 aa38.58■■■■□ 3.77
HLA-F-228ENST00000486194 CLASP1Q7Z460 1538 aa38.42■■■■□ 3.74
HLA-F-228ENST00000486194 CYB5RLQ6IPT4 315 aa38.33■■■■□ 3.73
HLA-F-228ENST00000486194 ERICH3Q5RHP9 1530 aa38.29■■■■□ 3.72
HLA-F-228ENST00000486194 ADAMTS12P58397 1594 aa38.27■■■■□ 3.72
HLA-F-228ENST00000486194 ARAP1Q96P48 1450 aa38.27■■■■□ 3.72
HLA-F-228ENST00000486194 GRIN2AQ12879 1464 aa38.26■■■■□ 3.72
HLA-F-228ENST00000486194 FHAD1B1AJZ9 1412 aa38.25■■■■□ 3.71
HLA-F-228ENST00000486194 NUP160Q12769 1436 aa38.12■■■■□ 3.69
HLA-F-228ENST00000486194 CEP170Q5SW79 1584 aa38.04■■■■□ 3.68
HLA-F-228ENST00000486194 KIF27Q86VH2 1401 aa38.02■■■■□ 3.68
HLA-F-228ENST00000486194 IGF1RP08069 1367 aa37.89■■■■□ 3.66
HLA-F-228ENST00000486194 SHROOM2Q13796 1616 aa37.85■■■■□ 3.65
HLA-F-228ENST00000486194 CUL7Q14999 1698 aa37.82■■■■□ 3.65
HLA-F-228ENST00000486194 ERCC6L2Q5T890 1561 aa37.78■■■■□ 3.64
HLA-F-228ENST00000486194 TRHP20396 242 aaPredicted RBP37.77■■■■□ 3.64
HLA-F-228ENST00000486194 JPH4Q96JJ6 628 aa37.74■■■■□ 3.63
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms