RNA–Protein interactions for RNA: ENST00000486060.1

CCHCR1-214, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 3

Gene CCHCR1, Length 582 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-214ENST00000486060 NISCHQ9Y2I1 1504 aa41.13■■■■■ 4.17
CCHCR1-214ENST00000486060 CCDC180Q9P1Z9 1646 aa36.7■■■■□ 3.47
CCHCR1-214ENST00000486060 ABCC9O60706 1549 aa36.08■■■■□ 3.37
CCHCR1-214ENST00000486060 RB1CC1Q8TDY2 1594 aa34.58■■■■□ 3.13
CCHCR1-214ENST00000486060 NACADO15069 1562 aa34.49■■■■□ 3.11
CCHCR1-214ENST00000486060 DCAF8L2P0C7V8 631 aa34.31■■■■□ 3.08
CCHCR1-214ENST00000486060 ZCCHC6Q5VYS8 1495 aaKnown RBP34.22■■■■□ 3.07
CCHCR1-214ENST00000486060 MYO15BQ96JP2 1530 aa34.2■■■■□ 3.06
CCHCR1-214ENST00000486060 UNC13AQ9UPW8 1703 aa34.05■■■■□ 3.04
CCHCR1-214ENST00000486060 DCAF1Q9Y4B6 1507 aa33.99■■■■□ 3.03
CCHCR1-214ENST00000486060 BICRAQ9NZM4 1560 aa33.68■■■□□ 2.98
CCHCR1-214ENST00000486060 PABPN1Q86U42 306 aaKnown RBP eCLIP33.65■■■□□ 2.98
CCHCR1-214ENST00000486060 SCRIBQ14160 1630 aa33.47■■■□□ 2.95
CCHCR1-214ENST00000486060 DNAJC5BQ9UF47 199 aa33.39■■■□□ 2.94
CCHCR1-214ENST00000486060 SHROOM4Q9ULL8 1493 aa33.11■■■□□ 2.89
CCHCR1-214ENST00000486060 EIF4G1Q04637 1599 aaKnown RBP32.73■■■□□ 2.83
CCHCR1-214ENST00000486060 CC2D2AQ9P2K1 1620 aa32.68■■■□□ 2.82
CCHCR1-214ENST00000486060 CECR2Q9BXF3 1484 aa32.41■■■□□ 2.78
CCHCR1-214ENST00000486060 SMARCA4P51532 1647 aa32■■■□□ 2.71
CCHCR1-214ENST00000486060 BAZ1AQ9NRL2 1556 aaPredicted RBP31.85■■■□□ 2.69
CCHCR1-214ENST00000486060 ATAD2BQ9ULI0 1458 aa31.83■■■□□ 2.69
CCHCR1-214ENST00000486060 NCAPD3P42695 1498 aa31.82■■■□□ 2.68
CCHCR1-214ENST00000486060 SMARCA2P51531 1590 aa31.74■■■□□ 2.67
CCHCR1-214ENST00000486060 MROH2BQ7Z745 1585 aa31.73■■■□□ 2.67
CCHCR1-214ENST00000486060 PEG3Q9GZU2 1588 aa31.68■■■□□ 2.66
CCHCR1-214ENST00000486060 HMGXB3Q12766 1538 aa31.66■■■□□ 2.66
CCHCR1-214ENST00000486060 BAZ1BQ9UIG0 1483 aaKnown RBP31.52■■■□□ 2.64
CCHCR1-214ENST00000486060 WIZO95785 1651 aa31.43■■■□□ 2.62
CCHCR1-214ENST00000486060 RSF1Q96T23 1441 aaPredicted RBP31.24■■■□□ 2.59
CCHCR1-214ENST00000486060 NESP48681 1621 aa31.21■■■□□ 2.59
CCHCR1-214ENST00000486060 LAMC3Q9Y6N6 1575 aa31.04■■■□□ 2.56
CCHCR1-214ENST00000486060 ERCC6Q03468 1493 aa31.02■■■□□ 2.56
CCHCR1-214ENST00000486060 TOP2AP11388 1531 aaKnown RBP30.99■■■□□ 2.55
CCHCR1-214ENST00000486060 KIF21AQ7Z4S6 1674 aa30.91■■■□□ 2.54
CCHCR1-214ENST00000486060 CADPSQ9ULU8 1353 aa30.85■■■□□ 2.53
CCHCR1-214ENST00000486060 THOC2Q8NI27 1593 aaKnown RBP30.82■■■□□ 2.52
CCHCR1-214ENST00000486060 CUX2O14529 1486 aa30.81■■■□□ 2.52
CCHCR1-214ENST00000486060 PDS5BQ9NTI5 1447 aa30.74■■■□□ 2.51
CCHCR1-214ENST00000486060 CFTRP13569 1480 aa30.66■■■□□ 2.5
CCHCR1-214ENST00000486060 CCDC88BA6NC98 1476 aa30.63■■■□□ 2.49
CCHCR1-214ENST00000486060 PRDM2Q13029 1718 aa30.58■■■□□ 2.49
CCHCR1-214ENST00000486060 FANCD2Q9BXW9 1451 aa30.53■■■□□ 2.48
CCHCR1-214ENST00000486060 MRC2Q9UBG0 1479 aa30.5■■■□□ 2.47
CCHCR1-214ENST00000486060 CEP164Q9UPV0 1460 aa30.5■■■□□ 2.47
CCHCR1-214ENST00000486060 WDR62O43379 1518 aa30.46■■■□□ 2.47
CCHCR1-214ENST00000486060 URB2Q14146 1524 aaKnown RBP30.31■■■□□ 2.44
CCHCR1-214ENST00000486060 SUPT5HO00267 1087 aaKnown RBP30.2■■■□□ 2.43
CCHCR1-214ENST00000486060 DNAJC5Q9H3Z4 198 aa30.13■■■□□ 2.41
CCHCR1-214ENST00000486060 TOPBP1Q92547 1522 aa30.05■■■□□ 2.4
CCHCR1-214ENST00000486060 DNMBPQ6XZF7 1577 aa29.99■■■□□ 2.39
CCHCR1-214ENST00000486060 ABCC8Q09428 1581 aa29.93■■■□□ 2.38
CCHCR1-214ENST00000486060 IFT140Q96RY7 1462 aa29.85■■■□□ 2.37
CCHCR1-214ENST00000486060 ZNF608Q9ULD9 1512 aaPredicted RBP29.83■■■□□ 2.37
CCHCR1-214ENST00000486060 TARBP1Q13395 1621 aaKnown RBP29.81■■■□□ 2.36
CCHCR1-214ENST00000486060 CUX1P39880 1505 aa29.78■■■□□ 2.36
CCHCR1-214ENST00000486060 POLA1P09884 1462 aaPredicted RBP29.78■■■□□ 2.36
CCHCR1-214ENST00000486060 EIF4G3O43432 1585 aaKnown RBP29.72■■■□□ 2.35
CCHCR1-214ENST00000486060 FGD5Q6ZNL6 1462 aa29.67■■■□□ 2.34
CCHCR1-214ENST00000486060 RAD54L2Q9Y4B4 1467 aa29.67■■■□□ 2.34
CCHCR1-214ENST00000486060 SOGA1O94964 1423 aa29.59■■■□□ 2.33
CCHCR1-214ENST00000486060 AQRO60306 1485 aaKnown RBP eCLIP29.59■■■□□ 2.332e-8■■■■■ 35.8
CCHCR1-214ENST00000486060 WDR97A6NE52 1622 aa29.56■■■□□ 2.32
CCHCR1-214ENST00000486060 BIVM-ERCC5R4GMW8 1640 aa29.49■■■□□ 2.31
CCHCR1-214ENST00000486060 TDRD9Q8NDG6 1382 aaKnown RBP29.48■■■□□ 2.31
CCHCR1-214ENST00000486060 SYNJ1O43426 1573 aa29.47■■■□□ 2.31
CCHCR1-214ENST00000486060 CHD1O14646 1710 aa29.46■■■□□ 2.31
CCHCR1-214ENST00000486060 TOP2BQ02880 1626 aa29.45■■■□□ 2.3
CCHCR1-214ENST00000486060 OSCARQ8IYS5 282 aa29.43■■■□□ 2.3
CCHCR1-214ENST00000486060 WRNQ14191 1432 aaPredicted RBP eCLIP29.41■■■□□ 2.3
CCHCR1-214ENST00000486060 PBRM1Q86U86 1689 aa29.36■■■□□ 2.29
CCHCR1-214ENST00000486060 ABCA10Q8WWZ4 1543 aa29.35■■■□□ 2.29
CCHCR1-214ENST00000486060 ABCA5Q8WWZ7 1642 aa29.34■■■□□ 2.29
CCHCR1-214ENST00000486060 SNAPC4Q5SXM2 1469 aa29.31■■■□□ 2.28
CCHCR1-214ENST00000486060 GRIN2BQ13224 1484 aa29.27■■■□□ 2.28
CCHCR1-214ENST00000486060 GAPVD1Q14C86 1478 aa29.26■■■□□ 2.27
CCHCR1-214ENST00000486060 MAGI1Q96QZ7 1491 aaPredicted RBP29.23■■■□□ 2.27
CCHCR1-214ENST00000486060 FBLN2P98095 1184 aa29.17■■■□□ 2.26
CCHCR1-214ENST00000486060 RIMBP3CA6NJZ7 1639 aa29.16■■■□□ 2.26
CCHCR1-214ENST00000486060 RIMBP3BA6NNM3 1639 aa29.16■■■□□ 2.26
CCHCR1-214ENST00000486060 RIMBP3Q9UFD9 1639 aa29.16■■■□□ 2.26
CCHCR1-214ENST00000486060 SYNJ2O15056 1496 aa29.12■■■□□ 2.25
CCHCR1-214ENST00000486060 ARHGEF11O15085 1522 aa29.08■■■□□ 2.25
CCHCR1-214ENST00000486060 CLASP1Q7Z460 1538 aa29.06■■■□□ 2.24
CCHCR1-214ENST00000486060 ADAMTS12P58397 1594 aa29.05■■■□□ 2.24
CCHCR1-214ENST00000486060 CHMP7Q8WUX9 453 aaPredicted RBP29.04■■■□□ 2.24
CCHCR1-214ENST00000486060 TRIM41Q8WV44 630 aa29.01■■■□□ 2.23
CCHCR1-214ENST00000486060 ERICH3Q5RHP9 1530 aa28.99■■■□□ 2.23
CCHCR1-214ENST00000486060 GRIN2AQ12879 1464 aa28.93■■■□□ 2.22
CCHCR1-214ENST00000486060 FHAD1B1AJZ9 1412 aa28.89■■■□□ 2.22
CCHCR1-214ENST00000486060 CEP170Q5SW79 1584 aa28.88■■■□□ 2.21
CCHCR1-214ENST00000486060 ARAP1Q96P48 1450 aa28.85■■■□□ 2.21
CCHCR1-214ENST00000486060 NUP160Q12769 1436 aa28.82■■■□□ 2.2
CCHCR1-214ENST00000486060 KIF27Q86VH2 1401 aa28.77■■■□□ 2.2
CCHCR1-214ENST00000486060 IGF1RP08069 1367 aa28.75■■■□□ 2.19
CCHCR1-214ENST00000486060 CYB5RLQ6IPT4 315 aa28.74■■■□□ 2.19
CCHCR1-214ENST00000486060 CUL7Q14999 1698 aa28.72■■■□□ 2.19
CCHCR1-214ENST00000486060 SHROOM2Q13796 1616 aa28.7■■■□□ 2.19
CCHCR1-214ENST00000486060 ERCC6L2Q5T890 1561 aa28.7■■■□□ 2.18
CCHCR1-214ENST00000486060 RUSC2Q8N2Y8 1516 aa28.64■■■□□ 2.17
CCHCR1-214ENST00000486060 CARMIL1Q5VZK9 1371 aa28.53■■■□□ 2.16
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms