RNA–Protein interactions for RNA: ENST00000485985.1

LMBR1-217, Transcript of limb development membrane protein 1, humanhuman

TSL 2

Gene LMBR1, Length 644 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMBR1-217ENST00000485985 NISCHQ9Y2I1 1504 aa52.12■■■■■ 5.93
LMBR1-217ENST00000485985 ABCC9O60706 1549 aa46.95■■■■■ 5.11
LMBR1-217ENST00000485985 CCDC180Q9P1Z9 1646 aa46.76■■■■■ 5.08
LMBR1-217ENST00000485985 RB1CC1Q8TDY2 1594 aa44.6■■■■■ 4.73
LMBR1-217ENST00000485985 NACADO15069 1562 aa44.26■■■■■ 4.68
LMBR1-217ENST00000485985 DNAJC5BQ9UF47 199 aa44.26■■■■■ 4.68
LMBR1-217ENST00000485985 DCAF8L2P0C7V8 631 aa44.01■■■■■ 4.64
LMBR1-217ENST00000485985 PABPN1Q86U42 306 aaKnown RBP eCLIP43.7■■■■■ 4.59
LMBR1-217ENST00000485985 UNC13AQ9UPW8 1703 aa43.6■■■■■ 4.57
LMBR1-217ENST00000485985 MYO15BQ96JP2 1530 aa43.58■■■■■ 4.57
LMBR1-217ENST00000485985 BICRAQ9NZM4 1560 aa43.33■■■■■ 4.53
LMBR1-217ENST00000485985 ZCCHC6Q5VYS8 1495 aaKnown RBP43.32■■■■■ 4.52
LMBR1-217ENST00000485985 DCAF1Q9Y4B6 1507 aa43.08■■■■■ 4.49
LMBR1-217ENST00000485985 SHROOM4Q9ULL8 1493 aa42.7■■■■■ 4.43
LMBR1-217ENST00000485985 SCRIBQ14160 1630 aa42.59■■■■■ 4.41
LMBR1-217ENST00000485985 CC2D2AQ9P2K1 1620 aa42.41■■■■■ 4.38
LMBR1-217ENST00000485985 CECR2Q9BXF3 1484 aa42.32■■■■■ 4.37
LMBR1-217ENST00000485985 EIF4G1Q04637 1599 aaKnown RBP42.27■■■■■ 4.36
LMBR1-217ENST00000485985 NCAPD3P42695 1498 aa40.89■■■■■ 4.14
LMBR1-217ENST00000485985 DNAJC5Q9H3Z4 198 aa40.79■■■■■ 4.12
LMBR1-217ENST00000485985 ATAD2BQ9ULI0 1458 aa40.71■■■■■ 4.11
LMBR1-217ENST00000485985 SMARCA4P51532 1647 aa40.67■■■■■ 4.1
LMBR1-217ENST00000485985 SMARCA2P51531 1590 aa40.58■■■■■ 4.09
LMBR1-217ENST00000485985 CUX2O14529 1486 aa40.54■■■■■ 4.08
LMBR1-217ENST00000485985 ERCC6Q03468 1493 aa40.54■■■■■ 4.08
LMBR1-217ENST00000485985 HMGXB3Q12766 1538 aa40.53■■■■■ 4.08
LMBR1-217ENST00000485985 BAZ1AQ9NRL2 1556 aaPredicted RBP40.44■■■■■ 4.06
LMBR1-217ENST00000485985 BAZ1BQ9UIG0 1483 aaKnown RBP40.3■■■■■ 4.04
LMBR1-217ENST00000485985 NESP48681 1621 aa40.29■■■■■ 4.04
LMBR1-217ENST00000485985 PEG3Q9GZU2 1588 aa40.26■■■■■ 4.04
LMBR1-217ENST00000485985 MROH2BQ7Z745 1585 aa40.19■■■■■ 4.02
LMBR1-217ENST00000485985 LAMC3Q9Y6N6 1575 aa39.97■■■■□ 3.99
LMBR1-217ENST00000485985 THOC2Q8NI27 1593 aaKnown RBP39.9■■■■□ 3.98
LMBR1-217ENST00000485985 WIZO95785 1651 aa39.8■■■■□ 3.96
LMBR1-217ENST00000485985 KIF21AQ7Z4S6 1674 aa39.76■■■■□ 3.96
LMBR1-217ENST00000485985 PDS5BQ9NTI5 1447 aa39.75■■■■□ 3.95
LMBR1-217ENST00000485985 CADPSQ9ULU8 1353 aa39.62■■■■□ 3.93
LMBR1-217ENST00000485985 RSF1Q96T23 1441 aaPredicted RBP39.42■■■■□ 3.9
LMBR1-217ENST00000485985 MRC2Q9UBG0 1479 aa39.42■■■■□ 3.9
LMBR1-217ENST00000485985 WDR62O43379 1518 aa39.32■■■■□ 3.89
LMBR1-217ENST00000485985 TOP2AP11388 1531 aaKnown RBP39.26■■■■□ 3.88
LMBR1-217ENST00000485985 CEP164Q9UPV0 1460 aa39.22■■■■□ 3.87
LMBR1-217ENST00000485985 FANCD2Q9BXW9 1451 aa39.17■■■■□ 3.86
LMBR1-217ENST00000485985 CFTRP13569 1480 aa39.13■■■■□ 3.85
LMBR1-217ENST00000485985 TRIM41Q8WV44 630 aa38.89■■■■□ 3.82
LMBR1-217ENST00000485985 PRDM2Q13029 1718 aa38.88■■■■□ 3.81
LMBR1-217ENST00000485985 URB2Q14146 1524 aaKnown RBP38.85■■■■□ 3.81
LMBR1-217ENST00000485985 CCDC88BA6NC98 1476 aa38.75■■■■□ 3.79
LMBR1-217ENST00000485985 OSCARQ8IYS5 282 aa38.7■■■■□ 3.79
LMBR1-217ENST00000485985 IFT140Q96RY7 1462 aa38.44■■■■□ 3.74
LMBR1-217ENST00000485985 ZNF608Q9ULD9 1512 aaPredicted RBP38.41■■■■□ 3.74
LMBR1-217ENST00000485985 TOPBP1Q92547 1522 aa38.4■■■■□ 3.74
LMBR1-217ENST00000485985 ABCC8Q09428 1581 aa38.31■■■■□ 3.72
LMBR1-217ENST00000485985 DNMBPQ6XZF7 1577 aa38.23■■■■□ 3.71
LMBR1-217ENST00000485985 RIMBP3CA6NJZ7 1639 aa38.19■■■■□ 3.7
LMBR1-217ENST00000485985 RIMBP3BA6NNM3 1639 aa38.19■■■■□ 3.7
LMBR1-217ENST00000485985 RIMBP3Q9UFD9 1639 aa38.19■■■■□ 3.7
LMBR1-217ENST00000485985 EIF4G3O43432 1585 aaKnown RBP38.17■■■■□ 3.7
LMBR1-217ENST00000485985 TARBP1Q13395 1621 aaKnown RBP38.08■■■■□ 3.69
LMBR1-217ENST00000485985 ARHGEF11O15085 1522 aa38.05■■■■□ 3.68
LMBR1-217ENST00000485985 AQRO60306 1485 aaKnown RBP eCLIP38.04■■■■□ 3.685e-8■■■■■ 27.4
LMBR1-217ENST00000485985 POLA1P09884 1462 aaPredicted RBP38■■■■□ 3.67
LMBR1-217ENST00000485985 CHD1O14646 1710 aa37.93■■■■□ 3.66
LMBR1-217ENST00000485985 RAD54L2Q9Y4B4 1467 aa37.87■■■■□ 3.65
LMBR1-217ENST00000485985 FBLN2P98095 1184 aa37.83■■■■□ 3.65
LMBR1-217ENST00000485985 SOGA1O94964 1423 aa37.83■■■■□ 3.65
LMBR1-217ENST00000485985 CYB5RLQ6IPT4 315 aa37.81■■■■□ 3.64
LMBR1-217ENST00000485985 SUPT5HO00267 1087 aaKnown RBP37.8■■■■□ 3.64
LMBR1-217ENST00000485985 TDRD9Q8NDG6 1382 aaKnown RBP37.79■■■■□ 3.64
LMBR1-217ENST00000485985 CUX1P39880 1505 aa37.76■■■■□ 3.63
LMBR1-217ENST00000485985 FGD5Q6ZNL6 1462 aa37.73■■■■□ 3.63
LMBR1-217ENST00000485985 WDR97A6NE52 1622 aa37.66■■■■□ 3.62
LMBR1-217ENST00000485985 ARAP1Q96P48 1450 aa37.65■■■■□ 3.62
LMBR1-217ENST00000485985 SNAPC4Q5SXM2 1469 aa37.63■■■■□ 3.61
LMBR1-217ENST00000485985 CHMP7Q8WUX9 453 aaPredicted RBP37.53■■■■□ 3.6
LMBR1-217ENST00000485985 MAGI1Q96QZ7 1491 aaPredicted RBP37.52■■■■□ 3.6
LMBR1-217ENST00000485985 GRIN2BQ13224 1484 aa37.52■■■■□ 3.6
LMBR1-217ENST00000485985 CLASP1Q7Z460 1538 aa37.5■■■■□ 3.59
LMBR1-217ENST00000485985 SYNJ1O43426 1573 aa37.45■■■■□ 3.59
LMBR1-217ENST00000485985 TRHP20396 242 aaPredicted RBP37.44■■■■□ 3.58
LMBR1-217ENST00000485985 SYNJ2O15056 1496 aa37.42■■■■□ 3.58
LMBR1-217ENST00000485985 PBRM1Q86U86 1689 aa37.38■■■■□ 3.57
LMBR1-217ENST00000485985 GAPVD1Q14C86 1478 aa37.36■■■■□ 3.57
LMBR1-217ENST00000485985 BIVM-ERCC5R4GMW8 1640 aa37.31■■■■□ 3.56
LMBR1-217ENST00000485985 ABCA5Q8WWZ7 1642 aa37.3■■■■□ 3.56
LMBR1-217ENST00000485985 ABCA10Q8WWZ4 1543 aa37.29■■■■□ 3.56
LMBR1-217ENST00000485985 TOP2BQ02880 1626 aa37.26■■■■□ 3.56
LMBR1-217ENST00000485985 WRNQ14191 1432 aaPredicted RBP eCLIP37.18■■■■□ 3.542e-6■■■■■ 59.6
LMBR1-217ENST00000485985 GRIN2AQ12879 1464 aa37.03■■■■□ 3.52
LMBR1-217ENST00000485985 ADAMTS12P58397 1594 aa36.99■■■■□ 3.51
LMBR1-217ENST00000485985 NUP160Q12769 1436 aa36.92■■■■□ 3.5
LMBR1-217ENST00000485985 CEP170Q5SW79 1584 aa36.91■■■■□ 3.5
LMBR1-217ENST00000485985 ERCC6L2Q5T890 1561 aa36.91■■■■□ 3.5
LMBR1-217ENST00000485985 FHAD1B1AJZ9 1412 aa36.88■■■■□ 3.49
LMBR1-217ENST00000485985 ERICH3Q5RHP9 1530 aa36.83■■■■□ 3.49
LMBR1-217ENST00000485985 SHROOM2Q13796 1616 aa36.77■■■■□ 3.48
LMBR1-217ENST00000485985 PRG4Q92954 1404 aaPredicted RBP36.59■■■■□ 3.45
LMBR1-217ENST00000485985 JPH4Q96JJ6 628 aa36.56■■■■□ 3.44
LMBR1-217ENST00000485985 AEBP2Q6ZN18 517 aaPredicted RBP36.48■■■■□ 3.43
LMBR1-217ENST00000485985 RUSC2Q8N2Y8 1516 aa36.47■■■■□ 3.43
Retrieved 100 of 20,778 RNA–protein pairs in 99.9 ms