RNA–Protein interactions for RNA: ENST00000485901.1

HLA-DOA-204, Transcript of major histocompatibility complex, class II, DO alpha, humanhuman

Gene HLA-DOA, Length 596 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOA-204ENST00000485901 NISCHQ9Y2I1 1504 aa29.55■■■□□ 2.32
HLA-DOA-204ENST00000485901 CCDC180Q9P1Z9 1646 aa26.68■■□□□ 1.86
HLA-DOA-204ENST00000485901 ABCC9O60706 1549 aa26.65■■□□□ 1.86
HLA-DOA-204ENST00000485901 RB1CC1Q8TDY2 1594 aa25.45■■□□□ 1.66
HLA-DOA-204ENST00000485901 NACADO15069 1562 aa25.28■■□□□ 1.64
HLA-DOA-204ENST00000485901 DNAJC5BQ9UF47 199 aa25.15■■□□□ 1.62
HLA-DOA-204ENST00000485901 MYO15BQ96JP2 1530 aa24.98■■□□□ 1.59
HLA-DOA-204ENST00000485901 DCAF8L2P0C7V8 631 aa24.86■■□□□ 1.57
HLA-DOA-204ENST00000485901 UNC13AQ9UPW8 1703 aa24.79■■□□□ 1.56
HLA-DOA-204ENST00000485901 PABPN1Q86U42 306 aaKnown RBP eCLIP24.74■■□□□ 1.55
HLA-DOA-204ENST00000485901 BICRAQ9NZM4 1560 aa24.63■■□□□ 1.53
HLA-DOA-204ENST00000485901 DCAF1Q9Y4B6 1507 aa24.54■■□□□ 1.52
HLA-DOA-204ENST00000485901 SHROOM4Q9ULL8 1493 aa24.52■■□□□ 1.52
HLA-DOA-204ENST00000485901 ZCCHC6Q5VYS8 1495 aaKnown RBP24.45■■□□□ 1.51
HLA-DOA-204ENST00000485901 CC2D2AQ9P2K1 1620 aa24.13■■□□□ 1.45
HLA-DOA-204ENST00000485901 CECR2Q9BXF3 1484 aa24.11■■□□□ 1.45
HLA-DOA-204ENST00000485901 SCRIBQ14160 1630 aa24.08■■□□□ 1.45
HLA-DOA-204ENST00000485901 EIF4G1Q04637 1599 aaKnown RBP24.07■■□□□ 1.44
HLA-DOA-204ENST00000485901 DNAJC5Q9H3Z4 198 aa23.39■■□□□ 1.33
HLA-DOA-204ENST00000485901 NCAPD3P42695 1498 aa23.33■■□□□ 1.33
HLA-DOA-204ENST00000485901 CUX2O14529 1486 aa23.24■■□□□ 1.31
HLA-DOA-204ENST00000485901 ATAD2BQ9ULI0 1458 aa23.16■■□□□ 1.3
HLA-DOA-204ENST00000485901 SMARCA2P51531 1590 aa23.14■■□□□ 1.3
HLA-DOA-204ENST00000485901 HMGXB3Q12766 1538 aa23.13■■□□□ 1.29
HLA-DOA-204ENST00000485901 ERCC6Q03468 1493 aa23.09■■□□□ 1.29
HLA-DOA-204ENST00000485901 SMARCA4P51532 1647 aa23.07■■□□□ 1.28
HLA-DOA-204ENST00000485901 BAZ1AQ9NRL2 1556 aaPredicted RBP22.99■■□□□ 1.27
HLA-DOA-204ENST00000485901 PEG3Q9GZU2 1588 aa22.96■■□□□ 1.27
HLA-DOA-204ENST00000485901 BAZ1BQ9UIG0 1483 aaKnown RBP22.91■■□□□ 1.26
HLA-DOA-204ENST00000485901 LAMC3Q9Y6N6 1575 aa22.83■■□□□ 1.25
HLA-DOA-204ENST00000485901 NESP48681 1621 aa22.82■■□□□ 1.24
HLA-DOA-204ENST00000485901 THOC2Q8NI27 1593 aaKnown RBP22.72■■□□□ 1.23
HLA-DOA-204ENST00000485901 PDS5BQ9NTI5 1447 aa22.7■■□□□ 1.22
HLA-DOA-204ENST00000485901 MROH2BQ7Z745 1585 aa22.68■■□□□ 1.22
HLA-DOA-204ENST00000485901 CADPSQ9ULU8 1353 aa22.58■■□□□ 1.21
HLA-DOA-204ENST00000485901 KIF21AQ7Z4S6 1674 aa22.57■■□□□ 1.2
HLA-DOA-204ENST00000485901 MRC2Q9UBG0 1479 aa22.45■■□□□ 1.18
HLA-DOA-204ENST00000485901 WDR62O43379 1518 aa22.41■■□□□ 1.18
HLA-DOA-204ENST00000485901 WIZO95785 1651 aa22.39■■□□□ 1.17
HLA-DOA-204ENST00000485901 CEP164Q9UPV0 1460 aa22.32■■□□□ 1.16
HLA-DOA-204ENST00000485901 CFTRP13569 1480 aa22.28■■□□□ 1.16
HLA-DOA-204ENST00000485901 FANCD2Q9BXW9 1451 aa22.27■■□□□ 1.16
HLA-DOA-204ENST00000485901 RSF1Q96T23 1441 aaPredicted RBP22.2■■□□□ 1.14
HLA-DOA-204ENST00000485901 TOP2AP11388 1531 aaKnown RBP22.18■■□□□ 1.14
HLA-DOA-204ENST00000485901 OSCARQ8IYS5 282 aa22.11■■□□□ 1.13
HLA-DOA-204ENST00000485901 TRIM41Q8WV44 630 aa22.09■■□□□ 1.13
HLA-DOA-204ENST00000485901 PRDM2Q13029 1718 aa22.06■■□□□ 1.12
HLA-DOA-204ENST00000485901 URB2Q14146 1524 aaKnown RBP22.06■■□□□ 1.12
HLA-DOA-204ENST00000485901 ABCC8Q09428 1581 aa21.92■■□□□ 1.1
HLA-DOA-204ENST00000485901 IFT140Q96RY7 1462 aa21.92■■□□□ 1.1
HLA-DOA-204ENST00000485901 CCDC88BA6NC98 1476 aa21.9■■□□□ 1.1
HLA-DOA-204ENST00000485901 TOPBP1Q92547 1522 aa21.82■■□□□ 1.08
HLA-DOA-204ENST00000485901 ZNF608Q9ULD9 1512 aaPredicted RBP21.77■■□□□ 1.08
HLA-DOA-204ENST00000485901 DNMBPQ6XZF7 1577 aa21.75■■□□□ 1.07
HLA-DOA-204ENST00000485901 RIMBP3CA6NJZ7 1639 aa21.75■■□□□ 1.07
HLA-DOA-204ENST00000485901 RIMBP3BA6NNM3 1639 aa21.75■■□□□ 1.07
HLA-DOA-204ENST00000485901 RIMBP3Q9UFD9 1639 aa21.75■■□□□ 1.07
HLA-DOA-204ENST00000485901 ARHGEF11O15085 1522 aa21.68■■□□□ 1.06
HLA-DOA-204ENST00000485901 EIF4G3O43432 1585 aaKnown RBP21.68■■□□□ 1.06
HLA-DOA-204ENST00000485901 TARBP1Q13395 1621 aaKnown RBP21.65■■□□□ 1.06
HLA-DOA-204ENST00000485901 WDR97A6NE52 1622 aa21.58■■□□□ 1.05
HLA-DOA-204ENST00000485901 POLA1P09884 1462 aaPredicted RBP21.58■■□□□ 1.04
HLA-DOA-204ENST00000485901 AQRO60306 1485 aaKnown RBP eCLIP21.57■■□□□ 1.04
HLA-DOA-204ENST00000485901 CHD1O14646 1710 aa21.55■■□□□ 1.04
HLA-DOA-204ENST00000485901 SUPT5HO00267 1087 aaKnown RBP21.52■■□□□ 1.04
HLA-DOA-204ENST00000485901 SOGA1O94964 1423 aa21.5■■□□□ 1.03
HLA-DOA-204ENST00000485901 CYB5RLQ6IPT4 315 aa21.5■■□□□ 1.03
HLA-DOA-204ENST00000485901 FBLN2P98095 1184 aa21.44■■□□□ 1.02
HLA-DOA-204ENST00000485901 ARAP1Q96P48 1450 aa21.43■■□□□ 1.02
HLA-DOA-204ENST00000485901 RAD54L2Q9Y4B4 1467 aa21.42■■□□□ 1.02
HLA-DOA-204ENST00000485901 MAGI1Q96QZ7 1491 aaPredicted RBP21.41■■□□□ 1.02
HLA-DOA-204ENST00000485901 TDRD9Q8NDG6 1382 aaKnown RBP21.4■■□□□ 1.02
HLA-DOA-204ENST00000485901 FGD5Q6ZNL6 1462 aa21.39■■□□□ 1.01
HLA-DOA-204ENST00000485901 SYNJ1O43426 1573 aa21.36■■□□□ 1.01
HLA-DOA-204ENST00000485901 GRIN2BQ13224 1484 aa21.36■■□□□ 1.01
HLA-DOA-204ENST00000485901 CLASP1Q7Z460 1538 aa21.35■■□□□ 1.01
HLA-DOA-204ENST00000485901 SNAPC4Q5SXM2 1469 aa21.35■■□□□ 1.01
HLA-DOA-204ENST00000485901 CHMP7Q8WUX9 453 aaPredicted RBP21.35■■□□□ 1.01
HLA-DOA-204ENST00000485901 CUX1P39880 1505 aa21.33■■□□□ 1
HLA-DOA-204ENST00000485901 SYNJ2O15056 1496 aa21.32■■□□□ 1
HLA-DOA-204ENST00000485901 TRHP20396 242 aaPredicted RBP21.3■■□□□ 1
HLA-DOA-204ENST00000485901 GAPVD1Q14C86 1478 aa21.24■□□□□ 0.99
HLA-DOA-204ENST00000485901 ABCA10Q8WWZ4 1543 aa21.23■□□□□ 0.99
HLA-DOA-204ENST00000485901 PBRM1Q86U86 1689 aa21.2■□□□□ 0.98
HLA-DOA-204ENST00000485901 ABCA5Q8WWZ7 1642 aa21.16■□□□□ 0.98
HLA-DOA-204ENST00000485901 WRNQ14191 1432 aaPredicted RBP eCLIP21.1■□□□□ 0.97
HLA-DOA-204ENST00000485901 GRIN2AQ12879 1464 aa21.06■□□□□ 0.96
HLA-DOA-204ENST00000485901 NUP160Q12769 1436 aa21.03■□□□□ 0.96
HLA-DOA-204ENST00000485901 TOP2BQ02880 1626 aa21.01■□□□□ 0.95
HLA-DOA-204ENST00000485901 BIVM-ERCC5R4GMW8 1640 aa21.01■□□□□ 0.95
HLA-DOA-204ENST00000485901 FHAD1B1AJZ9 1412 aa21■□□□□ 0.95
HLA-DOA-204ENST00000485901 ADAMTS12P58397 1594 aa20.99■□□□□ 0.95
HLA-DOA-204ENST00000485901 ERICH3Q5RHP9 1530 aa20.99■□□□□ 0.95
HLA-DOA-204ENST00000485901 SHROOM2Q13796 1616 aa20.96■□□□□ 0.95
HLA-DOA-204ENST00000485901 CEP170Q5SW79 1584 aa20.93■□□□□ 0.94
HLA-DOA-204ENST00000485901 AEBP2Q6ZN18 517 aaPredicted RBP20.87■□□□□ 0.93
HLA-DOA-204ENST00000485901 ERCC6L2Q5T890 1561 aa20.87■□□□□ 0.93
HLA-DOA-204ENST00000485901 JPH4Q96JJ6 628 aa20.81■□□□□ 0.92
HLA-DOA-204ENST00000485901 PRG4Q92954 1404 aaPredicted RBP20.78■□□□□ 0.92
HLA-DOA-204ENST00000485901 KIF13AQ9H1H9 1805 aa20.73■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms