RNA–Protein interactions for RNA: ENST00000485870.1

COL1A1-206, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 3

Gene COL1A1, Length 403 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-206ENST00000485870 NISCHQ9Y2I1 1504 aa45.08■■■■■ 4.81
COL1A1-206ENST00000485870 CCDC180Q9P1Z9 1646 aa40.16■■■■■ 4.02
COL1A1-206ENST00000485870 ABCC9O60706 1549 aa39.59■■■■□ 3.93
COL1A1-206ENST00000485870 RB1CC1Q8TDY2 1594 aa37.93■■■■□ 3.66
COL1A1-206ENST00000485870 DCAF8L2P0C7V8 631 aa37.84■■■■□ 3.65
COL1A1-206ENST00000485870 NACADO15069 1562 aa37.81■■■■□ 3.64
COL1A1-206ENST00000485870 ZCCHC6Q5VYS8 1495 aaKnown RBP37.51■■■■□ 3.59
COL1A1-206ENST00000485870 MYO15BQ96JP2 1530 aa37.47■■■■□ 3.59
COL1A1-206ENST00000485870 DCAF1Q9Y4B6 1507 aa37.25■■■■□ 3.55
COL1A1-206ENST00000485870 UNC13AQ9UPW8 1703 aa37.1■■■■□ 3.53
COL1A1-206ENST00000485870 PABPN1Q86U42 306 aaKnown RBP eCLIP36.96■■■■□ 3.51
COL1A1-206ENST00000485870 BICRAQ9NZM4 1560 aa36.8■■■■□ 3.48
COL1A1-206ENST00000485870 SCRIBQ14160 1630 aa36.7■■■■□ 3.47
COL1A1-206ENST00000485870 DNAJC5BQ9UF47 199 aa36.52■■■■□ 3.44
COL1A1-206ENST00000485870 SHROOM4Q9ULL8 1493 aa36.33■■■■□ 3.41
COL1A1-206ENST00000485870 EIF4G1Q04637 1599 aaKnown RBP35.85■■■■□ 3.33
COL1A1-206ENST00000485870 CC2D2AQ9P2K1 1620 aa35.77■■■■□ 3.32
COL1A1-206ENST00000485870 CECR2Q9BXF3 1484 aa35.57■■■■□ 3.28
COL1A1-206ENST00000485870 SMARCA4P51532 1647 aa35.05■■■■□ 3.2
COL1A1-206ENST00000485870 BAZ1AQ9NRL2 1556 aaPredicted RBP34.96■■■■□ 3.19
COL1A1-206ENST00000485870 ATAD2BQ9ULI0 1458 aa34.9■■■■□ 3.18
COL1A1-206ENST00000485870 NCAPD3P42695 1498 aa34.89■■■■□ 3.18
COL1A1-206ENST00000485870 SMARCA2P51531 1590 aa34.84■■■■□ 3.17
COL1A1-206ENST00000485870 MROH2BQ7Z745 1585 aa34.77■■■■□ 3.16
COL1A1-206ENST00000485870 HMGXB3Q12766 1538 aa34.71■■■■□ 3.15
COL1A1-206ENST00000485870 PEG3Q9GZU2 1588 aa34.66■■■■□ 3.14
COL1A1-206ENST00000485870 BAZ1BQ9UIG0 1483 aaKnown RBP34.62■■■■□ 3.13
COL1A1-206ENST00000485870 WIZO95785 1651 aa34.4■■■■□ 3.1
COL1A1-206ENST00000485870 RSF1Q96T23 1441 aaPredicted RBP34.27■■■■□ 3.08
COL1A1-206ENST00000485870 NESP48681 1621 aa34.19■■■■□ 3.06
COL1A1-206ENST00000485870 ERCC6Q03468 1493 aa34.14■■■■□ 3.06
COL1A1-206ENST00000485870 LAMC3Q9Y6N6 1575 aa34.02■■■■□ 3.04
COL1A1-206ENST00000485870 TOP2AP11388 1531 aaKnown RBP33.99■■■■□ 3.03
COL1A1-206ENST00000485870 CADPSQ9ULU8 1353 aa33.88■■■■□ 3.01
COL1A1-206ENST00000485870 CUX2O14529 1486 aa33.81■■■■□ 3
COL1A1-206ENST00000485870 PDS5BQ9NTI5 1447 aa33.8■■■■□ 3
COL1A1-206ENST00000485870 KIF21AQ7Z4S6 1674 aa33.77■■■■□ 3
COL1A1-206ENST00000485870 THOC2Q8NI27 1593 aaKnown RBP33.69■■■□□ 2.98
COL1A1-206ENST00000485870 CFTRP13569 1480 aa33.63■■■□□ 2.97
COL1A1-206ENST00000485870 CCDC88BA6NC98 1476 aa33.6■■■□□ 2.97
COL1A1-206ENST00000485870 FANCD2Q9BXW9 1451 aa33.51■■■□□ 2.96
COL1A1-206ENST00000485870 CEP164Q9UPV0 1460 aa33.5■■■□□ 2.95
COL1A1-206ENST00000485870 MRC2Q9UBG0 1479 aa33.49■■■□□ 2.95
COL1A1-206ENST00000485870 PRDM2Q13029 1718 aa33.38■■■□□ 2.93
COL1A1-206ENST00000485870 WDR62O43379 1518 aa33.37■■■□□ 2.93
COL1A1-206ENST00000485870 SUPT5HO00267 1087 aaKnown RBP33.31■■■□□ 2.92
COL1A1-206ENST00000485870 URB2Q14146 1524 aaKnown RBP33.2■■■□□ 2.91
COL1A1-206ENST00000485870 DNAJC5Q9H3Z4 198 aa33.03■■■□□ 2.88
COL1A1-206ENST00000485870 TOPBP1Q92547 1522 aa32.96■■■□□ 2.87
COL1A1-206ENST00000485870 ABCC8Q09428 1581 aa32.89■■■□□ 2.86
COL1A1-206ENST00000485870 DNMBPQ6XZF7 1577 aa32.89■■■□□ 2.86
COL1A1-206ENST00000485870 IFT140Q96RY7 1462 aa32.79■■■□□ 2.84
COL1A1-206ENST00000485870 ZNF608Q9ULD9 1512 aaPredicted RBP32.69■■■□□ 2.82
COL1A1-206ENST00000485870 POLA1P09884 1462 aaPredicted RBP32.66■■■□□ 2.82
COL1A1-206ENST00000485870 CUX1P39880 1505 aa32.63■■■□□ 2.81
COL1A1-206ENST00000485870 TARBP1Q13395 1621 aaKnown RBP32.6■■■□□ 2.81
COL1A1-206ENST00000485870 FGD5Q6ZNL6 1462 aa32.56■■■□□ 2.8
COL1A1-206ENST00000485870 EIF4G3O43432 1585 aaKnown RBP32.55■■■□□ 2.8
COL1A1-206ENST00000485870 RAD54L2Q9Y4B4 1467 aa32.54■■■□□ 2.8
COL1A1-206ENST00000485870 SOGA1O94964 1423 aa32.52■■■□□ 2.8
COL1A1-206ENST00000485870 AQRO60306 1485 aaKnown RBP eCLIP32.48■■■□□ 2.79
COL1A1-206ENST00000485870 TDRD9Q8NDG6 1382 aaKnown RBP32.39■■■□□ 2.78
COL1A1-206ENST00000485870 OSCARQ8IYS5 282 aa32.37■■■□□ 2.77
COL1A1-206ENST00000485870 WRNQ14191 1432 aaPredicted RBP eCLIP32.33■■■□□ 2.77
COL1A1-206ENST00000485870 WDR97A6NE52 1622 aa32.29■■■□□ 2.76
COL1A1-206ENST00000485870 SYNJ1O43426 1573 aa32.28■■■□□ 2.76
COL1A1-206ENST00000485870 TOP2BQ02880 1626 aa32.27■■■□□ 2.76
COL1A1-206ENST00000485870 BIVM-ERCC5R4GMW8 1640 aa32.27■■■□□ 2.76
COL1A1-206ENST00000485870 ABCA10Q8WWZ4 1543 aa32.21■■■□□ 2.75
COL1A1-206ENST00000485870 CHD1O14646 1710 aa32.2■■■□□ 2.74
COL1A1-206ENST00000485870 SNAPC4Q5SXM2 1469 aa32.18■■■□□ 2.74
COL1A1-206ENST00000485870 GRIN2BQ13224 1484 aa32.16■■■□□ 2.74
COL1A1-206ENST00000485870 FBLN2P98095 1184 aa32.16■■■□□ 2.74
COL1A1-206ENST00000485870 GAPVD1Q14C86 1478 aa32.14■■■□□ 2.74
COL1A1-206ENST00000485870 ABCA5Q8WWZ7 1642 aa32.11■■■□□ 2.73
COL1A1-206ENST00000485870 PBRM1Q86U86 1689 aa32.11■■■□□ 2.73
COL1A1-206ENST00000485870 MAGI1Q96QZ7 1491 aaPredicted RBP32.09■■■□□ 2.73
COL1A1-206ENST00000485870 CHMP7Q8WUX9 453 aaPredicted RBP32■■■□□ 2.71
COL1A1-206ENST00000485870 SYNJ2O15056 1496 aa31.97■■■□□ 2.71
COL1A1-206ENST00000485870 TRIM41Q8WV44 630 aa31.94■■■□□ 2.7
COL1A1-206ENST00000485870 RIMBP3CA6NJZ7 1639 aa31.91■■■□□ 2.7
COL1A1-206ENST00000485870 RIMBP3BA6NNM3 1639 aa31.91■■■□□ 2.7
COL1A1-206ENST00000485870 RIMBP3Q9UFD9 1639 aa31.91■■■□□ 2.7
COL1A1-206ENST00000485870 ARHGEF11O15085 1522 aa31.87■■■□□ 2.69
COL1A1-206ENST00000485870 ADAMTS12P58397 1594 aa31.83■■■□□ 2.69
COL1A1-206ENST00000485870 ERICH3Q5RHP9 1530 aa31.81■■■□□ 2.68
COL1A1-206ENST00000485870 CLASP1Q7Z460 1538 aa31.8■■■□□ 2.68
COL1A1-206ENST00000485870 FHAD1B1AJZ9 1412 aa31.75■■■□□ 2.67
COL1A1-206ENST00000485870 GRIN2AQ12879 1464 aa31.75■■■□□ 2.67
COL1A1-206ENST00000485870 KIF27Q86VH2 1401 aa31.66■■■□□ 2.66
COL1A1-206ENST00000485870 CEP170Q5SW79 1584 aa31.62■■■□□ 2.65
COL1A1-206ENST00000485870 ARAP1Q96P48 1450 aa31.61■■■□□ 2.65
COL1A1-206ENST00000485870 CYB5RLQ6IPT4 315 aa31.61■■■□□ 2.65
COL1A1-206ENST00000485870 NUP160Q12769 1436 aa31.6■■■□□ 2.65
COL1A1-206ENST00000485870 IGF1RP08069 1367 aa31.56■■■□□ 2.64
COL1A1-206ENST00000485870 CUL7Q14999 1698 aa31.49■■■□□ 2.63
COL1A1-206ENST00000485870 ERCC6L2Q5T890 1561 aa31.39■■■□□ 2.62
COL1A1-206ENST00000485870 SHROOM2Q13796 1616 aa31.39■■■□□ 2.62
COL1A1-206ENST00000485870 CARMIL1Q5VZK9 1371 aa31.38■■■□□ 2.61
COL1A1-206ENST00000485870 RUSC2Q8N2Y8 1516 aa31.37■■■□□ 2.61
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms