RNA–Protein interactions for RNA: ENST00000485781.5

MDH1-213, Transcript of malate dehydrogenase 1, humanhuman

TSL 2

Gene MDH1, Length 893 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDH1-213ENST00000485781 NISCHQ9Y2I1 1504 aa29.17■■■□□ 2.26
MDH1-213ENST00000485781 ABCC9O60706 1549 aa26.74■■□□□ 1.87
MDH1-213ENST00000485781 CCDC180Q9P1Z9 1646 aa26.32■■□□□ 1.8
MDH1-213ENST00000485781 DNAJC5BQ9UF47 199 aa25.34■■□□□ 1.65
MDH1-213ENST00000485781 RB1CC1Q8TDY2 1594 aa25.27■■□□□ 1.64
MDH1-213ENST00000485781 NACADO15069 1562 aa24.99■■□□□ 1.59
MDH1-213ENST00000485781 DCAF8L2P0C7V8 631 aa24.93■■□□□ 1.58
MDH1-213ENST00000485781 PABPN1Q86U42 306 aaKnown RBP eCLIP24.85■■□□□ 1.57
MDH1-213ENST00000485781 UNC13AQ9UPW8 1703 aa24.62■■□□□ 1.53
MDH1-213ENST00000485781 MYO15BQ96JP2 1530 aa24.49■■□□□ 1.51
MDH1-213ENST00000485781 BICRAQ9NZM4 1560 aa24.48■■□□□ 1.51
MDH1-213ENST00000485781 SHROOM4Q9ULL8 1493 aa24.15■■□□□ 1.46
MDH1-213ENST00000485781 CECR2Q9BXF3 1484 aa24.12■■□□□ 1.45
MDH1-213ENST00000485781 CC2D2AQ9P2K1 1620 aa24.1■■□□□ 1.45
MDH1-213ENST00000485781 ZCCHC6Q5VYS8 1495 aaKnown RBP24.09■■□□□ 1.45
MDH1-213ENST00000485781 DCAF1Q9Y4B6 1507 aa24.05■■□□□ 1.44
MDH1-213ENST00000485781 SCRIBQ14160 1630 aa24■■□□□ 1.43
MDH1-213ENST00000485781 EIF4G1Q04637 1599 aaKnown RBP23.95■■□□□ 1.42
MDH1-213ENST00000485781 DNAJC5Q9H3Z4 198 aa23.58■■□□□ 1.37
MDH1-213ENST00000485781 CUX2O14529 1486 aa23.17■■□□□ 1.3
MDH1-213ENST00000485781 ERCC6Q03468 1493 aa23.16■■□□□ 1.3
MDH1-213ENST00000485781 NCAPD3P42695 1498 aa23.06■■□□□ 1.28
MDH1-213ENST00000485781 ATAD2BQ9ULI0 1458 aa22.96■■□□□ 1.27
MDH1-213ENST00000485781 SMARCA2P51531 1590 aa22.89■■□□□ 1.26
MDH1-213ENST00000485781 HMGXB3Q12766 1538 aa22.87■■□□□ 1.25
MDH1-213ENST00000485781 NESP48681 1621 aa22.83■■□□□ 1.25
MDH1-213ENST00000485781 SMARCA4P51532 1647 aa22.83■■□□□ 1.25
MDH1-213ENST00000485781 BAZ1BQ9UIG0 1483 aaKnown RBP22.75■■□□□ 1.23
MDH1-213ENST00000485781 BAZ1AQ9NRL2 1556 aaPredicted RBP22.69■■□□□ 1.22
MDH1-213ENST00000485781 THOC2Q8NI27 1593 aaKnown RBP22.64■■□□□ 1.22
MDH1-213ENST00000485781 LAMC3Q9Y6N6 1575 aa22.63■■□□□ 1.21
MDH1-213ENST00000485781 PEG3Q9GZU2 1588 aa22.58■■□□□ 1.2
MDH1-213ENST00000485781 PDS5BQ9NTI5 1447 aa22.55■■□□□ 1.2
MDH1-213ENST00000485781 KIF21AQ7Z4S6 1674 aa22.51■■□□□ 1.19
MDH1-213ENST00000485781 TRIM41Q8WV44 630 aa22.48■■□□□ 1.19
MDH1-213ENST00000485781 MROH2BQ7Z745 1585 aa22.47■■□□□ 1.19
MDH1-213ENST00000485781 CADPSQ9ULU8 1353 aa22.38■■□□□ 1.17
MDH1-213ENST00000485781 MRC2Q9UBG0 1479 aa22.34■■□□□ 1.17
MDH1-213ENST00000485781 WDR62O43379 1518 aa22.26■■□□□ 1.15
MDH1-213ENST00000485781 CEP164Q9UPV0 1460 aa22.21■■□□□ 1.15
MDH1-213ENST00000485781 WIZO95785 1651 aa22.19■■□□□ 1.14
MDH1-213ENST00000485781 FANCD2Q9BXW9 1451 aa22.14■■□□□ 1.13
MDH1-213ENST00000485781 OSCARQ8IYS5 282 aa22.11■■□□□ 1.13
MDH1-213ENST00000485781 CFTRP13569 1480 aa22.03■■□□□ 1.12
MDH1-213ENST00000485781 URB2Q14146 1524 aaKnown RBP21.94■■□□□ 1.1
MDH1-213ENST00000485781 TOP2AP11388 1531 aaKnown RBP21.89■■□□□ 1.09
MDH1-213ENST00000485781 RSF1Q96T23 1441 aaPredicted RBP21.88■■□□□ 1.09
MDH1-213ENST00000485781 RIMBP3CA6NJZ7 1639 aa21.8■■□□□ 1.08
MDH1-213ENST00000485781 RIMBP3BA6NNM3 1639 aa21.8■■□□□ 1.08
MDH1-213ENST00000485781 RIMBP3Q9UFD9 1639 aa21.8■■□□□ 1.08
MDH1-213ENST00000485781 IFT140Q96RY7 1462 aa21.77■■□□□ 1.07
MDH1-213ENST00000485781 PRDM2Q13029 1718 aa21.75■■□□□ 1.07
MDH1-213ENST00000485781 ZNF608Q9ULD9 1512 aaPredicted RBP21.74■■□□□ 1.07
MDH1-213ENST00000485781 ARHGEF11O15085 1522 aa21.7■■□□□ 1.07
MDH1-213ENST00000485781 TOPBP1Q92547 1522 aa21.66■■□□□ 1.06
MDH1-213ENST00000485781 CCDC88BA6NC98 1476 aa21.65■■□□□ 1.06
MDH1-213ENST00000485781 CYB5RLQ6IPT4 315 aa21.63■■□□□ 1.05
MDH1-213ENST00000485781 ABCC8Q09428 1581 aa21.61■■□□□ 1.05
MDH1-213ENST00000485781 EIF4G3O43432 1585 aaKnown RBP21.6■■□□□ 1.05
MDH1-213ENST00000485781 TRHP20396 242 aaPredicted RBP21.56■■□□□ 1.04
MDH1-213ENST00000485781 FBLN2P98095 1184 aa21.55■■□□□ 1.04
MDH1-213ENST00000485781 DNMBPQ6XZF7 1577 aa21.55■■□□□ 1.04
MDH1-213ENST00000485781 AQRO60306 1485 aaKnown RBP eCLIP21.52■■□□□ 1.03
MDH1-213ENST00000485781 CHD1O14646 1710 aa21.5■■□□□ 1.03
MDH1-213ENST00000485781 ARAP1Q96P48 1450 aa21.45■■□□□ 1.03
MDH1-213ENST00000485781 TARBP1Q13395 1621 aaKnown RBP21.45■■□□□ 1.02
MDH1-213ENST00000485781 POLA1P09884 1462 aaPredicted RBP21.41■■□□□ 1.02
MDH1-213ENST00000485781 RAD54L2Q9Y4B4 1467 aa21.35■■□□□ 1.01
MDH1-213ENST00000485781 SOGA1O94964 1423 aa21.35■■□□□ 1.01
MDH1-213ENST00000485781 TDRD9Q8NDG6 1382 aaKnown RBP21.35■■□□□ 1.01
MDH1-213ENST00000485781 CHMP7Q8WUX9 453 aaPredicted RBP21.3■■□□□ 1
MDH1-213ENST00000485781 SNAPC4Q5SXM2 1469 aa21.29■■□□□ 1
MDH1-213ENST00000485781 SYNJ1O43426 1573 aa21.24■□□□□ 0.99
MDH1-213ENST00000485781 FGD5Q6ZNL6 1462 aa21.24■□□□□ 0.99
MDH1-213ENST00000485781 WDR97A6NE52 1622 aa21.23■□□□□ 0.99
MDH1-213ENST00000485781 AEBP2Q6ZN18 517 aaPredicted RBP21.23■□□□□ 0.99
MDH1-213ENST00000485781 CLASP1Q7Z460 1538 aa21.23■□□□□ 0.99
MDH1-213ENST00000485781 MAGI1Q96QZ7 1491 aaPredicted RBP21.21■□□□□ 0.99
MDH1-213ENST00000485781 GRIN2BQ13224 1484 aa21.2■□□□□ 0.98
MDH1-213ENST00000485781 SYNJ2O15056 1496 aa21.15■□□□□ 0.98
MDH1-213ENST00000485781 CUX1P39880 1505 aa21.14■□□□□ 0.97
MDH1-213ENST00000485781 GAPVD1Q14C86 1478 aa21.08■□□□□ 0.97
MDH1-213ENST00000485781 PBRM1Q86U86 1689 aa21.05■□□□□ 0.96
MDH1-213ENST00000485781 ABCA10Q8WWZ4 1543 aa20.96■□□□□ 0.95
MDH1-213ENST00000485781 ABCA5Q8WWZ7 1642 aa20.93■□□□□ 0.94
MDH1-213ENST00000485781 GRIN2AQ12879 1464 aa20.9■□□□□ 0.94
MDH1-213ENST00000485781 ERCC6L2Q5T890 1561 aa20.87■□□□□ 0.93
MDH1-213ENST00000485781 WRNQ14191 1432 aaPredicted RBP eCLIP20.85■□□□□ 0.93
MDH1-213ENST00000485781 CEP170Q5SW79 1584 aa20.85■□□□□ 0.93
MDH1-213ENST00000485781 ADAMTS12P58397 1594 aa20.83■□□□□ 0.92
MDH1-213ENST00000485781 NUP160Q12769 1436 aa20.82■□□□□ 0.92
MDH1-213ENST00000485781 FHAD1B1AJZ9 1412 aa20.78■□□□□ 0.92
MDH1-213ENST00000485781 SUPT5HO00267 1087 aaKnown RBP20.77■□□□□ 0.92
MDH1-213ENST00000485781 SHROOM2Q13796 1616 aa20.75■□□□□ 0.91
MDH1-213ENST00000485781 PRG4Q92954 1404 aaPredicted RBP20.7■□□□□ 0.9
MDH1-213ENST00000485781 ERICH3Q5RHP9 1530 aa20.7■□□□□ 0.9
MDH1-213ENST00000485781 TOP2BQ02880 1626 aa20.7■□□□□ 0.9
MDH1-213ENST00000485781 BIVM-ERCC5R4GMW8 1640 aa20.69■□□□□ 0.9
MDH1-213ENST00000485781 JPH4Q96JJ6 628 aa20.68■□□□□ 0.9
MDH1-213ENST00000485781 KIF13AQ9H1H9 1805 aa20.67■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms