RNA–Protein interactions for RNA: ENST00000485780.1

SHROOM3-207, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 531 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-207ENST00000485780 NISCHQ9Y2I1 1504 aa22.51■■□□□ 1.19
SHROOM3-207ENST00000485780 CCDC180Q9P1Z9 1646 aa20.01■□□□□ 0.79
SHROOM3-207ENST00000485780 ABCC9O60706 1549 aa19.65■□□□□ 0.74
SHROOM3-207ENST00000485780 ZCCHC6Q5VYS8 1495 aaKnown RBP18.83■□□□□ 0.6
SHROOM3-207ENST00000485780 RB1CC1Q8TDY2 1594 aa18.8■□□□□ 0.6
SHROOM3-207ENST00000485780 DCAF8L2P0C7V8 631 aa18.72■□□□□ 0.59
SHROOM3-207ENST00000485780 MYO15BQ96JP2 1530 aa18.72■□□□□ 0.59
SHROOM3-207ENST00000485780 DCAF1Q9Y4B6 1507 aa18.7■□□□□ 0.58
SHROOM3-207ENST00000485780 NACADO15069 1562 aa18.7■□□□□ 0.58
SHROOM3-207ENST00000485780 PABPN1Q86U42 306 aaKnown RBP eCLIP18.32■□□□□ 0.52
SHROOM3-207ENST00000485780 UNC13AQ9UPW8 1703 aa18.29■□□□□ 0.52
SHROOM3-207ENST00000485780 BICRAQ9NZM4 1560 aa18.17■□□□□ 0.5
SHROOM3-207ENST00000485780 DNAJC5BQ9UF47 199 aa18.17■□□□□ 0.5
SHROOM3-207ENST00000485780 SCRIBQ14160 1630 aa18.15■□□□□ 0.5
SHROOM3-207ENST00000485780 SHROOM4Q9ULL8 1493 aa18.01■□□□□ 0.47
SHROOM3-207ENST00000485780 EIF4G1Q04637 1599 aaKnown RBP17.75■□□□□ 0.43
SHROOM3-207ENST00000485780 CC2D2AQ9P2K1 1620 aa17.73■□□□□ 0.43
SHROOM3-207ENST00000485780 CECR2Q9BXF3 1484 aa17.68■□□□□ 0.42
SHROOM3-207ENST00000485780 AEBP2Q6ZN18 517 aaPredicted RBP17.55■□□□□ 0.4
SHROOM3-207ENST00000485780 BAZ1AQ9NRL2 1556 aaPredicted RBP17.44■□□□□ 0.38
SHROOM3-207ENST00000485780 SMARCA4P51532 1647 aa17.43■□□□□ 0.38
SHROOM3-207ENST00000485780 MROH2BQ7Z745 1585 aa17.32■□□□□ 0.36
SHROOM3-207ENST00000485780 PEG3Q9GZU2 1588 aa17.32■□□□□ 0.36
SHROOM3-207ENST00000485780 SMARCA2P51531 1590 aa17.27■□□□□ 0.35
SHROOM3-207ENST00000485780 NCAPD3P42695 1498 aa17.24■□□□□ 0.35
SHROOM3-207ENST00000485780 ATAD2BQ9ULI0 1458 aa17.24■□□□□ 0.35
SHROOM3-207ENST00000485780 HMGXB3Q12766 1538 aa17.21■□□□□ 0.35
SHROOM3-207ENST00000485780 RSF1Q96T23 1441 aaPredicted RBP17.2■□□□□ 0.34
SHROOM3-207ENST00000485780 WIZO95785 1651 aa17.16■□□□□ 0.34
SHROOM3-207ENST00000485780 BAZ1BQ9UIG0 1483 aaKnown RBP17.12■□□□□ 0.33
SHROOM3-207ENST00000485780 TOP2AP11388 1531 aaKnown RBP17.02■□□□□ 0.32
SHROOM3-207ENST00000485780 ERCC6Q03468 1493 aa16.99■□□□□ 0.31
SHROOM3-207ENST00000485780 NESP48681 1621 aa16.9■□□□□ 0.3
SHROOM3-207ENST00000485780 CUX2O14529 1486 aa16.85■□□□□ 0.29
SHROOM3-207ENST00000485780 LAMC3Q9Y6N6 1575 aa16.85■□□□□ 0.29
SHROOM3-207ENST00000485780 PDS5BQ9NTI5 1447 aa16.77■□□□□ 0.27
SHROOM3-207ENST00000485780 CCDC88BA6NC98 1476 aa16.76■□□□□ 0.27
SHROOM3-207ENST00000485780 CADPSQ9ULU8 1353 aa16.76■□□□□ 0.27
SHROOM3-207ENST00000485780 SUPT5HO00267 1087 aaKnown RBP16.74■□□□□ 0.27
SHROOM3-207ENST00000485780 KIF21AQ7Z4S6 1674 aa16.69■□□□□ 0.26
SHROOM3-207ENST00000485780 THOC2Q8NI27 1593 aaKnown RBP16.69■□□□□ 0.26
SHROOM3-207ENST00000485780 CFTRP13569 1480 aa16.68■□□□□ 0.26
SHROOM3-207ENST00000485780 PRDM2Q13029 1718 aa16.68■□□□□ 0.26
SHROOM3-207ENST00000485780 MRC2Q9UBG0 1479 aa16.6■□□□□ 0.25
SHROOM3-207ENST00000485780 CEP164Q9UPV0 1460 aa16.59■□□□□ 0.25
SHROOM3-207ENST00000485780 FANCD2Q9BXW9 1451 aa16.57■□□□□ 0.24
SHROOM3-207ENST00000485780 DNAJC5Q9H3Z4 198 aa16.57■□□□□ 0.24
SHROOM3-207ENST00000485780 WDR62O43379 1518 aa16.52■□□□□ 0.24
SHROOM3-207ENST00000485780 URB2Q14146 1524 aaKnown RBP16.4■□□□□ 0.22
SHROOM3-207ENST00000485780 DNMBPQ6XZF7 1577 aa16.31■□□□□ 0.2
SHROOM3-207ENST00000485780 CHIC1Q5VXU3 224 aa16.31■□□□□ 0.2
SHROOM3-207ENST00000485780 ABCC8Q09428 1581 aa16.3■□□□□ 0.2
SHROOM3-207ENST00000485780 TOPBP1Q92547 1522 aa16.29■□□□□ 0.2
SHROOM3-207ENST00000485780 CUX1P39880 1505 aa16.25■□□□□ 0.19
SHROOM3-207ENST00000485780 IFT140Q96RY7 1462 aa16.24■□□□□ 0.19
SHROOM3-207ENST00000485780 BIVM-ERCC5R4GMW8 1640 aa16.23■□□□□ 0.19
SHROOM3-207ENST00000485780 TOP2BQ02880 1626 aa16.2■□□□□ 0.18
SHROOM3-207ENST00000485780 WRNQ14191 1432 aaPredicted RBP eCLIP16.19■□□□□ 0.18
SHROOM3-207ENST00000485780 SYNJ1O43426 1573 aa16.18■□□□□ 0.18
SHROOM3-207ENST00000485780 POLA1P09884 1462 aaPredicted RBP16.16■□□□□ 0.18
SHROOM3-207ENST00000485780 ZNF608Q9ULD9 1512 aaPredicted RBP16.16■□□□□ 0.18
SHROOM3-207ENST00000485780 TARBP1Q13395 1621 aaKnown RBP16.14■□□□□ 0.17
SHROOM3-207ENST00000485780 FGD5Q6ZNL6 1462 aa16.14■□□□□ 0.17
SHROOM3-207ENST00000485780 OSCARQ8IYS5 282 aa16.12■□□□□ 0.17
SHROOM3-207ENST00000485780 WDR97A6NE52 1622 aa16.11■□□□□ 0.17
SHROOM3-207ENST00000485780 EIF4G3O43432 1585 aaKnown RBP16.1■□□□□ 0.17
SHROOM3-207ENST00000485780 SOGA1O94964 1423 aa16.06■□□□□ 0.16
SHROOM3-207ENST00000485780 AQRO60306 1485 aaKnown RBP eCLIP16.05■□□□□ 0.16
SHROOM3-207ENST00000485780 RAD54L2Q9Y4B4 1467 aa16.05■□□□□ 0.16
SHROOM3-207ENST00000485780 ABCA10Q8WWZ4 1543 aa16.04■□□□□ 0.16
SHROOM3-207ENST00000485780 TRIM41Q8WV44 630 aa16.01■□□□□ 0.15
SHROOM3-207ENST00000485780 TDRD9Q8NDG6 1382 aaKnown RBP16■□□□□ 0.15
SHROOM3-207ENST00000485780 ABCA5Q8WWZ7 1642 aa15.99■□□□□ 0.15
SHROOM3-207ENST00000485780 FBLN2P98095 1184 aa15.97■□□□□ 0.15
SHROOM3-207ENST00000485780 SNAPC4Q5SXM2 1469 aa15.92■□□□□ 0.14
SHROOM3-207ENST00000485780 PBRM1Q86U86 1689 aa15.92■□□□□ 0.14
SHROOM3-207ENST00000485780 CHD1O14646 1710 aa15.91■□□□□ 0.14
SHROOM3-207ENST00000485780 GRIN2BQ13224 1484 aa15.91■□□□□ 0.14
SHROOM3-207ENST00000485780 GAPVD1Q14C86 1478 aa15.89■□□□□ 0.13
SHROOM3-207ENST00000485780 CHMP7Q8WUX9 453 aaPredicted RBP15.88■□□□□ 0.13
SHROOM3-207ENST00000485780 MAGI1Q96QZ7 1491 aaPredicted RBP15.88■□□□□ 0.13
SHROOM3-207ENST00000485780 RIMBP3CA6NJZ7 1639 aa15.86■□□□□ 0.13
SHROOM3-207ENST00000485780 RIMBP3BA6NNM3 1639 aa15.86■□□□□ 0.13
SHROOM3-207ENST00000485780 RIMBP3Q9UFD9 1639 aa15.86■□□□□ 0.13
SHROOM3-207ENST00000485780 ERICH3Q5RHP9 1530 aa15.85■□□□□ 0.13
SHROOM3-207ENST00000485780 ARHGEF11O15085 1522 aa15.84■□□□□ 0.13
SHROOM3-207ENST00000485780 KIF27Q86VH2 1401 aa15.82■□□□□ 0.12
SHROOM3-207ENST00000485780 SYNJ2O15056 1496 aa15.82■□□□□ 0.12
SHROOM3-207ENST00000485780 ADAMTS12P58397 1594 aa15.8■□□□□ 0.12
SHROOM3-207ENST00000485780 CUL7Q14999 1698 aa15.77■□□□□ 0.12
SHROOM3-207ENST00000485780 CLASP1Q7Z460 1538 aa15.74■□□□□ 0.11
SHROOM3-207ENST00000485780 CYB5RLQ6IPT4 315 aa15.74■□□□□ 0.11
SHROOM3-207ENST00000485780 RUSC2Q8N2Y8 1516 aa15.73■□□□□ 0.11
SHROOM3-207ENST00000485780 IGF1RP08069 1367 aa15.73■□□□□ 0.11
SHROOM3-207ENST00000485780 FHAD1B1AJZ9 1412 aa15.72■□□□□ 0.11
SHROOM3-207ENST00000485780 EEA1Q15075 1411 aa15.7■□□□□ 0.1
SHROOM3-207ENST00000485780 ARAP1Q96P48 1450 aa15.7■□□□□ 0.1
SHROOM3-207ENST00000485780 GRIN2AQ12879 1464 aa15.69■□□□□ 0.1
SHROOM3-207ENST00000485780 PRXQ9BXM0 1461 aa15.63■□□□□ 0.09
SHROOM3-207ENST00000485780 CARMIL1Q5VZK9 1371 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms