RNA–Protein interactions for RNA: ENST00000485645.5

SMC4-216, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 5

Gene SMC4, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-216ENST00000485645 NISCHQ9Y2I1 1504 aa42.68■■■■■ 4.42
SMC4-216ENST00000485645 CCDC180Q9P1Z9 1646 aa38.22■■■■□ 3.71
SMC4-216ENST00000485645 ABCC9O60706 1549 aa38.11■■■■□ 3.69
SMC4-216ENST00000485645 RB1CC1Q8TDY2 1594 aa36.34■■■■□ 3.41
SMC4-216ENST00000485645 NACADO15069 1562 aa36.13■■■■□ 3.37
SMC4-216ENST00000485645 DCAF8L2P0C7V8 631 aa36.04■■■■□ 3.36
SMC4-216ENST00000485645 MYO15BQ96JP2 1530 aa35.67■■■■□ 3.3
SMC4-216ENST00000485645 DNAJC5BQ9UF47 199 aa35.62■■■■□ 3.29
SMC4-216ENST00000485645 PABPN1Q86U42 306 aaKnown RBP eCLIP35.53■■■■□ 3.28
SMC4-216ENST00000485645 UNC13AQ9UPW8 1703 aa35.48■■■■□ 3.27
SMC4-216ENST00000485645 ZCCHC6Q5VYS8 1495 aaKnown RBP35.39■■■■□ 3.26
SMC4-216ENST00000485645 DCAF1Q9Y4B6 1507 aa35.27■■■■□ 3.24
SMC4-216ENST00000485645 BICRAQ9NZM4 1560 aa35.24■■■■□ 3.23
SMC4-216ENST00000485645 SCRIBQ14160 1630 aa34.84■■■■□ 3.17
SMC4-216ENST00000485645 SHROOM4Q9ULL8 1493 aa34.81■■■■□ 3.16
SMC4-216ENST00000485645 CC2D2AQ9P2K1 1620 aa34.42■■■■□ 3.1
SMC4-216ENST00000485645 EIF4G1Q04637 1599 aaKnown RBP34.38■■■■□ 3.09
SMC4-216ENST00000485645 CECR2Q9BXF3 1484 aa34.33■■■■□ 3.09
SMC4-216ENST00000485645 NCAPD3P42695 1498 aa33.36■■■□□ 2.93
SMC4-216ENST00000485645 ATAD2BQ9ULI0 1458 aa33.26■■■□□ 2.92
SMC4-216ENST00000485645 SMARCA4P51532 1647 aa33.25■■■□□ 2.91
SMC4-216ENST00000485645 SMARCA2P51531 1590 aa33.19■■■□□ 2.9
SMC4-216ENST00000485645 BAZ1AQ9NRL2 1556 aaPredicted RBP33.13■■■□□ 2.89
SMC4-216ENST00000485645 HMGXB3Q12766 1538 aa33.1■■■□□ 2.89
SMC4-216ENST00000485645 BAZ1BQ9UIG0 1483 aaKnown RBP32.96■■■□□ 2.87
SMC4-216ENST00000485645 PEG3Q9GZU2 1588 aa32.93■■■□□ 2.86
SMC4-216ENST00000485645 ERCC6Q03468 1493 aa32.92■■■□□ 2.86
SMC4-216ENST00000485645 MROH2BQ7Z745 1585 aa32.88■■■□□ 2.85
SMC4-216ENST00000485645 CUX2O14529 1486 aa32.8■■■□□ 2.84
SMC4-216ENST00000485645 NESP48681 1621 aa32.77■■■□□ 2.84
SMC4-216ENST00000485645 DNAJC5Q9H3Z4 198 aa32.63■■■□□ 2.81
SMC4-216ENST00000485645 LAMC3Q9Y6N6 1575 aa32.58■■■□□ 2.81
SMC4-216ENST00000485645 WIZO95785 1651 aa32.49■■■□□ 2.79
SMC4-216ENST00000485645 PDS5BQ9NTI5 1447 aa32.41■■■□□ 2.78
SMC4-216ENST00000485645 THOC2Q8NI27 1593 aaKnown RBP32.39■■■□□ 2.78
SMC4-216ENST00000485645 CADPSQ9ULU8 1353 aa32.36■■■□□ 2.77
SMC4-216ENST00000485645 KIF21AQ7Z4S6 1674 aa32.34■■■□□ 2.77
SMC4-216ENST00000485645 RSF1Q96T23 1441 aaPredicted RBP32.27■■■□□ 2.76
SMC4-216ENST00000485645 TOP2AP11388 1531 aaKnown RBP32.1■■■□□ 2.73
SMC4-216ENST00000485645 MRC2Q9UBG0 1479 aa32.1■■■□□ 2.73
SMC4-216ENST00000485645 CFTRP13569 1480 aa32.01■■■□□ 2.71
SMC4-216ENST00000485645 CEP164Q9UPV0 1460 aa32■■■□□ 2.71
SMC4-216ENST00000485645 WDR62O43379 1518 aa32■■■□□ 2.71
SMC4-216ENST00000485645 FANCD2Q9BXW9 1451 aa31.98■■■□□ 2.71
SMC4-216ENST00000485645 CCDC88BA6NC98 1476 aa31.74■■■□□ 2.67
SMC4-216ENST00000485645 URB2Q14146 1524 aaKnown RBP31.69■■■□□ 2.66
SMC4-216ENST00000485645 PRDM2Q13029 1718 aa31.66■■■□□ 2.66
SMC4-216ENST00000485645 TOPBP1Q92547 1522 aa31.38■■■□□ 2.61
SMC4-216ENST00000485645 OSCARQ8IYS5 282 aa31.37■■■□□ 2.61
SMC4-216ENST00000485645 IFT140Q96RY7 1462 aa31.37■■■□□ 2.61
SMC4-216ENST00000485645 ABCC8Q09428 1581 aa31.35■■■□□ 2.61
SMC4-216ENST00000485645 TRIM41Q8WV44 630 aa31.28■■■□□ 2.6
SMC4-216ENST00000485645 ZNF608Q9ULD9 1512 aaPredicted RBP31.28■■■□□ 2.6
SMC4-216ENST00000485645 DNMBPQ6XZF7 1577 aa31.27■■■□□ 2.6
SMC4-216ENST00000485645 EIF4G3O43432 1585 aaKnown RBP31.09■■■□□ 2.57
SMC4-216ENST00000485645 TARBP1Q13395 1621 aaKnown RBP31.08■■■□□ 2.57
SMC4-216ENST00000485645 POLA1P09884 1462 aaPredicted RBP31.08■■■□□ 2.57
SMC4-216ENST00000485645 AQRO60306 1485 aaKnown RBP eCLIP31.03■■■□□ 2.562e-8■■■■■ 40.2
SMC4-216ENST00000485645 SUPT5HO00267 1087 aaKnown RBP30.99■■■□□ 2.55
SMC4-216ENST00000485645 RAD54L2Q9Y4B4 1467 aa30.96■■■□□ 2.55
SMC4-216ENST00000485645 SOGA1O94964 1423 aa30.96■■■□□ 2.55
SMC4-216ENST00000485645 FGD5Q6ZNL6 1462 aa30.89■■■□□ 2.54
SMC4-216ENST00000485645 CUX1P39880 1505 aa30.88■■■□□ 2.53
SMC4-216ENST00000485645 TDRD9Q8NDG6 1382 aaKnown RBP30.88■■■□□ 2.53
SMC4-216ENST00000485645 RIMBP3CA6NJZ7 1639 aa30.87■■■□□ 2.53
SMC4-216ENST00000485645 RIMBP3BA6NNM3 1639 aa30.87■■■□□ 2.53
SMC4-216ENST00000485645 RIMBP3Q9UFD9 1639 aa30.87■■■□□ 2.53
SMC4-216ENST00000485645 FBLN2P98095 1184 aa30.85■■■□□ 2.53
SMC4-216ENST00000485645 CHD1O14646 1710 aa30.84■■■□□ 2.53
SMC4-216ENST00000485645 ARHGEF11O15085 1522 aa30.81■■■□□ 2.52
SMC4-216ENST00000485645 WDR97A6NE52 1622 aa30.79■■■□□ 2.52
SMC4-216ENST00000485645 SNAPC4Q5SXM2 1469 aa30.71■■■□□ 2.51
SMC4-216ENST00000485645 GRIN2BQ13224 1484 aa30.67■■■□□ 2.5
SMC4-216ENST00000485645 CHMP7Q8WUX9 453 aaPredicted RBP30.65■■■□□ 2.5
SMC4-216ENST00000485645 MAGI1Q96QZ7 1491 aaPredicted RBP30.64■■■□□ 2.5
SMC4-216ENST00000485645 CYB5RLQ6IPT4 315 aa30.62■■■□□ 2.49
SMC4-216ENST00000485645 GAPVD1Q14C86 1478 aa30.57■■■□□ 2.48
SMC4-216ENST00000485645 ABCA10Q8WWZ4 1543 aa30.56■■■□□ 2.48
SMC4-216ENST00000485645 SYNJ2O15056 1496 aa30.54■■■□□ 2.48
SMC4-216ENST00000485645 SYNJ1O43426 1573 aa30.52■■■□□ 2.48
SMC4-216ENST00000485645 PBRM1Q86U86 1689 aa30.52■■■□□ 2.48
SMC4-216ENST00000485645 ARAP1Q96P48 1450 aa30.5■■■□□ 2.47
SMC4-216ENST00000485645 WRNQ14191 1432 aaPredicted RBP eCLIP30.49■■■□□ 2.47
SMC4-216ENST00000485645 CLASP1Q7Z460 1538 aa30.49■■■□□ 2.47
SMC4-216ENST00000485645 ABCA5Q8WWZ7 1642 aa30.47■■■□□ 2.47
SMC4-216ENST00000485645 TOP2BQ02880 1626 aa30.44■■■□□ 2.46
SMC4-216ENST00000485645 BIVM-ERCC5R4GMW8 1640 aa30.42■■■□□ 2.46
SMC4-216ENST00000485645 GRIN2AQ12879 1464 aa30.26■■■□□ 2.44
SMC4-216ENST00000485645 TRHP20396 242 aaPredicted RBP30.25■■■□□ 2.43
SMC4-216ENST00000485645 ADAMTS12P58397 1594 aa30.24■■■□□ 2.43
SMC4-216ENST00000485645 FHAD1B1AJZ9 1412 aa30.2■■■□□ 2.42
SMC4-216ENST00000485645 ERICH3Q5RHP9 1530 aa30.18■■■□□ 2.42
SMC4-216ENST00000485645 NUP160Q12769 1436 aa30.15■■■□□ 2.42
SMC4-216ENST00000485645 CEP170Q5SW79 1584 aa30.13■■■□□ 2.41
SMC4-216ENST00000485645 ERCC6L2Q5T890 1561 aa30.03■■■□□ 2.4
SMC4-216ENST00000485645 SHROOM2Q13796 1616 aa29.98■■■□□ 2.39
SMC4-216ENST00000485645 JPH4Q96JJ6 628 aa29.89■■■□□ 2.38
SMC4-216ENST00000485645 KIF27Q86VH2 1401 aa29.88■■■□□ 2.37
SMC4-216ENST00000485645 PRG4Q92954 1404 aaPredicted RBP29.88■■■□□ 2.37
SMC4-216ENST00000485645 IGF1RP08069 1367 aa29.85■■■□□ 2.37
Retrieved 100 of 20,778 RNA–protein pairs in 149 ms