RNA–Protein interactions for RNA: ENST00000485610.5

SMARCD3-212, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best)

Gene SMARCD3, Length 1,480 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-212ENST00000485610 NISCHQ9Y2I1 1504 aa41.71■■■■■ 4.27
SMARCD3-212ENST00000485610 CCDC180Q9P1Z9 1646 aa36.87■■■■□ 3.49
SMARCD3-212ENST00000485610 ABCC9O60706 1549 aa35.18■■■■□ 3.22
SMARCD3-212ENST00000485610 ZCCHC6Q5VYS8 1495 aaKnown RBP34.95■■■■□ 3.18
SMARCD3-212ENST00000485610 DCAF1Q9Y4B6 1507 aa34.58■■■■□ 3.13
SMARCD3-212ENST00000485610 MYO15BQ96JP2 1530 aa34.43■■■■□ 3.1
SMARCD3-212ENST00000485610 DCAF8L2P0C7V8 631 aa34.39■■■■□ 3.1
SMARCD3-212ENST00000485610 NACADO15069 1562 aa34.39■■■■□ 3.1
SMARCD3-212ENST00000485610 RB1CC1Q8TDY2 1594 aa34.25■■■■□ 3.07
SMARCD3-212ENST00000485610 SCRIBQ14160 1630 aa33.65■■■□□ 2.98
SMARCD3-212ENST00000485610 UNC13AQ9UPW8 1703 aa33.61■■■□□ 2.97
SMARCD3-212ENST00000485610 SHROOM4Q9ULL8 1493 aa33.38■■■□□ 2.93
SMARCD3-212ENST00000485610 BICRAQ9NZM4 1560 aa33.18■■■□□ 2.9
SMARCD3-212ENST00000485610 PABPN1Q86U42 306 aaKnown RBP eCLIP32.93■■■□□ 2.86
SMARCD3-212ENST00000485610 CECR2Q9BXF3 1484 aa32.38■■■□□ 2.77
SMARCD3-212ENST00000485610 BAZ1AQ9NRL2 1556 aaPredicted RBP32.31■■■□□ 2.76
SMARCD3-212ENST00000485610 SMARCA4P51532 1647 aa32.26■■■□□ 2.76
SMARCD3-212ENST00000485610 EIF4G1Q04637 1599 aaKnown RBP32.24■■■□□ 2.75
SMARCD3-212ENST00000485610 MROH2BQ7Z745 1585 aa32.16■■■□□ 2.74
SMARCD3-212ENST00000485610 RSF1Q96T23 1441 aaPredicted RBP32.03■■■□□ 2.72
SMARCD3-212ENST00000485610 PEG3Q9GZU2 1588 aa31.92■■■□□ 2.7
SMARCD3-212ENST00000485610 CC2D2AQ9P2K1 1620 aa31.92■■■□□ 2.7
SMARCD3-212ENST00000485610 WIZO95785 1651 aa31.91■■■□□ 2.7
SMARCD3-212ENST00000485610 SMARCA2P51531 1590 aa31.87■■■□□ 2.69
SMARCD3-212ENST00000485610 ATAD2BQ9ULI0 1458 aa31.81■■■□□ 2.68
SMARCD3-212ENST00000485610 SUPT5HO00267 1087 aaKnown RBP31.76■■■□□ 2.67
SMARCD3-212ENST00000485610 HMGXB3Q12766 1538 aa31.66■■■□□ 2.66
SMARCD3-212ENST00000485610 NCAPD3P42695 1498 aa31.66■■■□□ 2.66
SMARCD3-212ENST00000485610 BAZ1BQ9UIG0 1483 aaKnown RBP31.62■■■□□ 2.65
SMARCD3-212ENST00000485610 TOP2AP11388 1531 aaKnown RBP31.61■■■□□ 2.65
SMARCD3-212ENST00000485610 DNAJC5BQ9UF47 199 aa31.46■■■□□ 2.63
SMARCD3-212ENST00000485610 CCDC88BA6NC98 1476 aa31.17■■■□□ 2.58
SMARCD3-212ENST00000485610 PRDM2Q13029 1718 aa30.83■■■□□ 2.53
SMARCD3-212ENST00000485610 CFTRP13569 1480 aa30.78■■■□□ 2.52
SMARCD3-212ENST00000485610 LAMC3Q9Y6N6 1575 aa30.78■■■□□ 2.52
SMARCD3-212ENST00000485610 CADPSQ9ULU8 1353 aa30.76■■■□□ 2.52
SMARCD3-212ENST00000485610 NESP48681 1621 aa30.68■■■□□ 2.5
SMARCD3-212ENST00000485610 PDS5BQ9NTI5 1447 aa30.47■■■□□ 2.47
SMARCD3-212ENST00000485610 KIF21AQ7Z4S6 1674 aa30.46■■■□□ 2.47
SMARCD3-212ENST00000485610 FANCD2Q9BXW9 1451 aa30.45■■■□□ 2.46
SMARCD3-212ENST00000485610 CEP164Q9UPV0 1460 aa30.37■■■□□ 2.45
SMARCD3-212ENST00000485610 ABCC8Q09428 1581 aa30.31■■■□□ 2.44
SMARCD3-212ENST00000485610 ERCC6Q03468 1493 aa30.28■■■□□ 2.44
SMARCD3-212ENST00000485610 WRNQ14191 1432 aaPredicted RBP eCLIP30.21■■■□□ 2.43
SMARCD3-212ENST00000485610 BIVM-ERCC5R4GMW8 1640 aa30.15■■■□□ 2.42
SMARCD3-212ENST00000485610 SYNJ1O43426 1573 aa30.15■■■□□ 2.42
SMARCD3-212ENST00000485610 MRC2Q9UBG0 1479 aa30.15■■■□□ 2.42
SMARCD3-212ENST00000485610 DNMBPQ6XZF7 1577 aa30.15■■■□□ 2.42
SMARCD3-212ENST00000485610 CUX1P39880 1505 aa30.14■■■□□ 2.42
SMARCD3-212ENST00000485610 THOC2Q8NI27 1593 aaKnown RBP30.14■■■□□ 2.42
SMARCD3-212ENST00000485610 TOP2BQ02880 1626 aa30.13■■■□□ 2.41
SMARCD3-212ENST00000485610 URB2Q14146 1524 aaKnown RBP30.11■■■□□ 2.41
SMARCD3-212ENST00000485610 CHIC1Q5VXU3 224 aa30.1■■■□□ 2.41
SMARCD3-212ENST00000485610 TOPBP1Q92547 1522 aa30.07■■■□□ 2.4
SMARCD3-212ENST00000485610 WDR62O43379 1518 aa30.05■■■□□ 2.4
SMARCD3-212ENST00000485610 TRIM41Q8WV44 630 aa29.96■■■□□ 2.39
SMARCD3-212ENST00000485610 FGD5Q6ZNL6 1462 aa29.91■■■□□ 2.38
SMARCD3-212ENST00000485610 POLA1P09884 1462 aaPredicted RBP29.87■■■□□ 2.37
SMARCD3-212ENST00000485610 WDR97A6NE52 1622 aa29.74■■■□□ 2.35
SMARCD3-212ENST00000485610 CUX2O14529 1486 aa29.73■■■□□ 2.35
SMARCD3-212ENST00000485610 TARBP1Q13395 1621 aaKnown RBP29.72■■■□□ 2.35
SMARCD3-212ENST00000485610 SOGA1O94964 1423 aa29.7■■■□□ 2.34
SMARCD3-212ENST00000485610 RAD54L2Q9Y4B4 1467 aa29.69■■■□□ 2.34
SMARCD3-212ENST00000485610 IFT140Q96RY7 1462 aa29.67■■■□□ 2.34
SMARCD3-212ENST00000485610 ABCA10Q8WWZ4 1543 aa29.66■■■□□ 2.34
SMARCD3-212ENST00000485610 ABCA5Q8WWZ7 1642 aa29.54■■■□□ 2.32
SMARCD3-212ENST00000485610 KIF27Q86VH2 1401 aa29.51■■■□□ 2.32
SMARCD3-212ENST00000485610 EEA1Q15075 1411 aa29.5■■■□□ 2.31
SMARCD3-212ENST00000485610 EIF4G3O43432 1585 aaKnown RBP29.47■■■□□ 2.31
SMARCD3-212ENST00000485610 RUSC2Q8N2Y8 1516 aa29.46■■■□□ 2.31
SMARCD3-212ENST00000485610 ZNF608Q9ULD9 1512 aaPredicted RBP29.46■■■□□ 2.31
SMARCD3-212ENST00000485610 PBRM1Q86U86 1689 aa29.44■■■□□ 2.3
SMARCD3-212ENST00000485610 TDRD9Q8NDG6 1382 aaKnown RBP29.42■■■□□ 2.3
SMARCD3-212ENST00000485610 GAPVD1Q14C86 1478 aa29.41■■■□□ 2.3
SMARCD3-212ENST00000485610 AQRO60306 1485 aaKnown RBP eCLIP29.36■■■□□ 2.29
SMARCD3-212ENST00000485610 ERICH3Q5RHP9 1530 aa29.34■■■□□ 2.29
SMARCD3-212ENST00000485610 FAM9AQ8IZU1 332 aaPredicted RBP29.32■■■□□ 2.28
SMARCD3-212ENST00000485610 GRIN2BQ13224 1484 aa29.31■■■□□ 2.28
SMARCD3-212ENST00000485610 CUL7Q14999 1698 aa29.29■■■□□ 2.28
SMARCD3-212ENST00000485610 CSRNP3Q8WYN3 585 aa29.24■■■□□ 2.27
SMARCD3-212ENST00000485610 IGF1RP08069 1367 aa29.24■■■□□ 2.27
SMARCD3-212ENST00000485610 KIF21BO75037 1637 aa29.2■■■□□ 2.26
SMARCD3-212ENST00000485610 ADAMTS12P58397 1594 aa29.19■■■□□ 2.26
SMARCD3-212ENST00000485610 SNAPC4Q5SXM2 1469 aa29.17■■■□□ 2.26
SMARCD3-212ENST00000485610 MAGI1Q96QZ7 1491 aaPredicted RBP29.17■■■□□ 2.26
SMARCD3-212ENST00000485610 PRXQ9BXM0 1461 aa29.15■■■□□ 2.26
SMARCD3-212ENST00000485610 CARMIL1Q5VZK9 1371 aa29.11■■■□□ 2.25
SMARCD3-212ENST00000485610 FHAD1B1AJZ9 1412 aa29.1■■■□□ 2.25
SMARCD3-212ENST00000485610 RAPGEF2Q9Y4G8 1499 aa29.06■■■□□ 2.24
SMARCD3-212ENST00000485610 GOLGA3Q08378 1498 aa29.04■■■□□ 2.24
SMARCD3-212ENST00000485610 SYNJ2O15056 1496 aa29.03■■■□□ 2.24
SMARCD3-212ENST00000485610 CHD1O14646 1710 aa29■■■□□ 2.23
SMARCD3-212ENST00000485610 GRIN2AQ12879 1464 aa28.94■■■□□ 2.22
SMARCD3-212ENST00000485610 CTTNBP2Q8WZ74 1663 aa28.9■■■□□ 2.22
SMARCD3-212ENST00000485610 CHMP7Q8WUX9 453 aaPredicted RBP28.87■■■□□ 2.21
SMARCD3-212ENST00000485610 EHMT2Q96KQ7 1210 aa28.86■■■□□ 2.21
SMARCD3-212ENST00000485610 LOC105371045A0A1W2PR82 267 aa28.84■■■□□ 2.21
SMARCD3-212ENST00000485610 FBLN2P98095 1184 aa28.81■■■□□ 2.2
SMARCD3-212ENST00000485610 CEP170Q5SW79 1584 aa28.79■■■□□ 2.2
SMARCD3-212ENST00000485610 UBTFP17480 764 aaKnown RBP28.78■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms