RNA–Protein interactions for RNA: ENST00000485592.5

SMARCD3-211, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 3

Gene SMARCD3, Length 820 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-211ENST00000485592 NISCHQ9Y2I1 1504 aa34.66■■■■□ 3.14
SMARCD3-211ENST00000485592 ABCC9O60706 1549 aa31.34■■■□□ 2.61
SMARCD3-211ENST00000485592 CCDC180Q9P1Z9 1646 aa31.25■■■□□ 2.59
SMARCD3-211ENST00000485592 RB1CC1Q8TDY2 1594 aa29.81■■■□□ 2.36
SMARCD3-211ENST00000485592 NACADO15069 1562 aa29.56■■■□□ 2.32
SMARCD3-211ENST00000485592 DNAJC5BQ9UF47 199 aa29.44■■■□□ 2.3
SMARCD3-211ENST00000485592 DCAF8L2P0C7V8 631 aa29.32■■■□□ 2.28
SMARCD3-211ENST00000485592 UNC13AQ9UPW8 1703 aa29.13■■■□□ 2.25
SMARCD3-211ENST00000485592 PABPN1Q86U42 306 aaKnown RBP eCLIP29.11■■■□□ 2.25
SMARCD3-211ENST00000485592 MYO15BQ96JP2 1530 aa29.09■■■□□ 2.25
SMARCD3-211ENST00000485592 BICRAQ9NZM4 1560 aa28.88■■■□□ 2.21
SMARCD3-211ENST00000485592 ZCCHC6Q5VYS8 1495 aaKnown RBP28.71■■■□□ 2.19
SMARCD3-211ENST00000485592 DCAF1Q9Y4B6 1507 aa28.64■■■□□ 2.18
SMARCD3-211ENST00000485592 SHROOM4Q9ULL8 1493 aa28.56■■■□□ 2.16
SMARCD3-211ENST00000485592 SCRIBQ14160 1630 aa28.43■■■□□ 2.14
SMARCD3-211ENST00000485592 CC2D2AQ9P2K1 1620 aa28.32■■■□□ 2.12
SMARCD3-211ENST00000485592 CECR2Q9BXF3 1484 aa28.26■■■□□ 2.11
SMARCD3-211ENST00000485592 EIF4G1Q04637 1599 aaKnown RBP28.23■■■□□ 2.11
SMARCD3-211ENST00000485592 NCAPD3P42695 1498 aa27.25■■□□□ 1.95
SMARCD3-211ENST00000485592 DNAJC5Q9H3Z4 198 aa27.21■■□□□ 1.95
SMARCD3-211ENST00000485592 ATAD2BQ9ULI0 1458 aa27.14■■□□□ 1.94
SMARCD3-211ENST00000485592 CUX2O14529 1486 aa27.13■■□□□ 1.93
SMARCD3-211ENST00000485592 ERCC6Q03468 1493 aa27.12■■□□□ 1.93
SMARCD3-211ENST00000485592 SMARCA4P51532 1647 aa27.11■■□□□ 1.93
SMARCD3-211ENST00000485592 SMARCA2P51531 1590 aa27.1■■□□□ 1.93
SMARCD3-211ENST00000485592 HMGXB3Q12766 1538 aa27.07■■□□□ 1.92
SMARCD3-211ENST00000485592 BAZ1AQ9NRL2 1556 aaPredicted RBP26.96■■□□□ 1.91
SMARCD3-211ENST00000485592 BAZ1BQ9UIG0 1483 aaKnown RBP26.91■■□□□ 1.9
SMARCD3-211ENST00000485592 NESP48681 1621 aa26.86■■□□□ 1.89
SMARCD3-211ENST00000485592 PEG3Q9GZU2 1588 aa26.84■■□□□ 1.89
SMARCD3-211ENST00000485592 LAMC3Q9Y6N6 1575 aa26.71■■□□□ 1.87
SMARCD3-211ENST00000485592 MROH2BQ7Z745 1585 aa26.69■■□□□ 1.86
SMARCD3-211ENST00000485592 THOC2Q8NI27 1593 aaKnown RBP26.67■■□□□ 1.86
SMARCD3-211ENST00000485592 KIF21AQ7Z4S6 1674 aa26.57■■□□□ 1.84
SMARCD3-211ENST00000485592 PDS5BQ9NTI5 1447 aa26.55■■□□□ 1.84
SMARCD3-211ENST00000485592 CADPSQ9ULU8 1353 aa26.41■■□□□ 1.82
SMARCD3-211ENST00000485592 WIZO95785 1651 aa26.4■■□□□ 1.82
SMARCD3-211ENST00000485592 MRC2Q9UBG0 1479 aa26.32■■□□□ 1.8
SMARCD3-211ENST00000485592 WDR62O43379 1518 aa26.27■■□□□ 1.8
SMARCD3-211ENST00000485592 CEP164Q9UPV0 1460 aa26.2■■□□□ 1.78
SMARCD3-211ENST00000485592 FANCD2Q9BXW9 1451 aa26.13■■□□□ 1.77
SMARCD3-211ENST00000485592 CFTRP13569 1480 aa26.08■■□□□ 1.77
SMARCD3-211ENST00000485592 RSF1Q96T23 1441 aaPredicted RBP26.07■■□□□ 1.76
SMARCD3-211ENST00000485592 TOP2AP11388 1531 aaKnown RBP26.07■■□□□ 1.76
SMARCD3-211ENST00000485592 TRIM41Q8WV44 630 aa25.99■■□□□ 1.75
SMARCD3-211ENST00000485592 URB2Q14146 1524 aaKnown RBP25.9■■□□□ 1.74
SMARCD3-211ENST00000485592 PRDM2Q13029 1718 aa25.9■■□□□ 1.74
SMARCD3-211ENST00000485592 OSCARQ8IYS5 282 aa25.81■■□□□ 1.72
SMARCD3-211ENST00000485592 CCDC88BA6NC98 1476 aa25.72■■□□□ 1.71
SMARCD3-211ENST00000485592 IFT140Q96RY7 1462 aa25.67■■□□□ 1.7
SMARCD3-211ENST00000485592 TOPBP1Q92547 1522 aa25.62■■□□□ 1.69
SMARCD3-211ENST00000485592 ZNF608Q9ULD9 1512 aaPredicted RBP25.6■■□□□ 1.69
SMARCD3-211ENST00000485592 ABCC8Q09428 1581 aa25.58■■□□□ 1.69
SMARCD3-211ENST00000485592 DNMBPQ6XZF7 1577 aa25.53■■□□□ 1.68
SMARCD3-211ENST00000485592 RIMBP3CA6NJZ7 1639 aa25.53■■□□□ 1.68
SMARCD3-211ENST00000485592 RIMBP3BA6NNM3 1639 aa25.53■■□□□ 1.68
SMARCD3-211ENST00000485592 RIMBP3Q9UFD9 1639 aa25.53■■□□□ 1.68
SMARCD3-211ENST00000485592 EIF4G3O43432 1585 aaKnown RBP25.52■■□□□ 1.68
SMARCD3-211ENST00000485592 ARHGEF11O15085 1522 aa25.42■■□□□ 1.66
SMARCD3-211ENST00000485592 TARBP1Q13395 1621 aaKnown RBP25.4■■□□□ 1.66
SMARCD3-211ENST00000485592 CHD1O14646 1710 aa25.36■■□□□ 1.65
SMARCD3-211ENST00000485592 AQRO60306 1485 aaKnown RBP eCLIP25.34■■□□□ 1.65
SMARCD3-211ENST00000485592 POLA1P09884 1462 aaPredicted RBP25.34■■□□□ 1.65
SMARCD3-211ENST00000485592 FBLN2P98095 1184 aa25.24■■□□□ 1.63
SMARCD3-211ENST00000485592 RAD54L2Q9Y4B4 1467 aa25.22■■□□□ 1.63
SMARCD3-211ENST00000485592 SOGA1O94964 1423 aa25.21■■□□□ 1.63
SMARCD3-211ENST00000485592 CYB5RLQ6IPT4 315 aa25.21■■□□□ 1.63
SMARCD3-211ENST00000485592 WDR97A6NE52 1622 aa25.19■■□□□ 1.62
SMARCD3-211ENST00000485592 TDRD9Q8NDG6 1382 aaKnown RBP25.17■■□□□ 1.62
SMARCD3-211ENST00000485592 FGD5Q6ZNL6 1462 aa25.16■■□□□ 1.62
SMARCD3-211ENST00000485592 ARAP1Q96P48 1450 aa25.15■■□□□ 1.62
SMARCD3-211ENST00000485592 SNAPC4Q5SXM2 1469 aa25.13■■□□□ 1.61
SMARCD3-211ENST00000485592 CUX1P39880 1505 aa25.1■■□□□ 1.61
SMARCD3-211ENST00000485592 MAGI1Q96QZ7 1491 aaPredicted RBP25.07■■□□□ 1.6
SMARCD3-211ENST00000485592 SYNJ1O43426 1573 aa25.05■■□□□ 1.6
SMARCD3-211ENST00000485592 CLASP1Q7Z460 1538 aa25.04■■□□□ 1.6
SMARCD3-211ENST00000485592 GRIN2BQ13224 1484 aa25.03■■□□□ 1.6
SMARCD3-211ENST00000485592 CHMP7Q8WUX9 453 aaPredicted RBP25.03■■□□□ 1.6
SMARCD3-211ENST00000485592 TRHP20396 242 aaPredicted RBP25.02■■□□□ 1.6
SMARCD3-211ENST00000485592 PBRM1Q86U86 1689 aa24.97■■□□□ 1.59
SMARCD3-211ENST00000485592 SYNJ2O15056 1496 aa24.97■■□□□ 1.59
SMARCD3-211ENST00000485592 GAPVD1Q14C86 1478 aa24.92■■□□□ 1.58
SMARCD3-211ENST00000485592 ABCA10Q8WWZ4 1543 aa24.87■■□□□ 1.57
SMARCD3-211ENST00000485592 ABCA5Q8WWZ7 1642 aa24.86■■□□□ 1.57
SMARCD3-211ENST00000485592 SUPT5HO00267 1087 aaKnown RBP24.79■■□□□ 1.56
SMARCD3-211ENST00000485592 WRNQ14191 1432 aaPredicted RBP eCLIP24.74■■□□□ 1.55
SMARCD3-211ENST00000485592 GRIN2AQ12879 1464 aa24.71■■□□□ 1.55
SMARCD3-211ENST00000485592 BIVM-ERCC5R4GMW8 1640 aa24.7■■□□□ 1.54
SMARCD3-211ENST00000485592 ADAMTS12P58397 1594 aa24.7■■□□□ 1.54
SMARCD3-211ENST00000485592 TOP2BQ02880 1626 aa24.68■■□□□ 1.54
SMARCD3-211ENST00000485592 CEP170Q5SW79 1584 aa24.63■■□□□ 1.53
SMARCD3-211ENST00000485592 NUP160Q12769 1436 aa24.62■■□□□ 1.53
SMARCD3-211ENST00000485592 ERCC6L2Q5T890 1561 aa24.6■■□□□ 1.53
SMARCD3-211ENST00000485592 FHAD1B1AJZ9 1412 aa24.6■■□□□ 1.53
SMARCD3-211ENST00000485592 ERICH3Q5RHP9 1530 aa24.58■■□□□ 1.53
SMARCD3-211ENST00000485592 SHROOM2Q13796 1616 aa24.55■■□□□ 1.52
SMARCD3-211ENST00000485592 AEBP2Q6ZN18 517 aaPredicted RBP24.44■■□□□ 1.5
SMARCD3-211ENST00000485592 PRG4Q92954 1404 aaPredicted RBP24.4■■□□□ 1.5
SMARCD3-211ENST00000485592 RUSC2Q8N2Y8 1516 aa24.35■■□□□ 1.49
SMARCD3-211ENST00000485592 JPH4Q96JJ6 628 aa24.35■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms