RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-215ENST00000485550 NISCHQ9Y2I1 1504 aa26.6■■□□□ 1.85
HMGN1-215ENST00000485550 AEBP2Q6ZN18 517 aaPredicted RBP26.39■■□□□ 1.82
HMGN1-215ENST00000485550 CHIC1Q5VXU3 224 aa24.93■■□□□ 1.58
HMGN1-215ENST00000485550 ABCC9O60706 1549 aa24.54■■□□□ 1.52
HMGN1-215ENST00000485550 CCDC180Q9P1Z9 1646 aa24.1■■□□□ 1.45
HMGN1-215ENST00000485550 DNAJC5BQ9UF47 199 aa23.39■■□□□ 1.33
HMGN1-215ENST00000485550 RB1CC1Q8TDY2 1594 aa23.13■■□□□ 1.29
HMGN1-215ENST00000485550 NACADO15069 1562 aa22.84■■□□□ 1.25
HMGN1-215ENST00000485550 UNC13AQ9UPW8 1703 aa22.77■■□□□ 1.24
HMGN1-215ENST00000485550 PABPN1Q86U42 306 aaKnown RBP eCLIP22.77■■□□□ 1.24
HMGN1-215ENST00000485550 DCAF8L2P0C7V8 631 aa22.7■■□□□ 1.22
HMGN1-215ENST00000485550 BICRAQ9NZM4 1560 aa22.5■■□□□ 1.19
HMGN1-215ENST00000485550 SENP3Q9H4L4 574 aaPredicted RBP22.44■■□□□ 1.18
HMGN1-215ENST00000485550 MYO15BQ96JP2 1530 aa22.31■■□□□ 1.16
HMGN1-215ENST00000485550 PHF23Q9BUL5 403 aaPredicted RBP22.18■■□□□ 1.14
HMGN1-215ENST00000485550 CC2D2AQ9P2K1 1620 aa22.16■■□□□ 1.14
HMGN1-215ENST00000485550 CECR2Q9BXF3 1484 aa22.11■■□□□ 1.13
HMGN1-215ENST00000485550 SHROOM4Q9ULL8 1493 aa22.03■■□□□ 1.12
HMGN1-215ENST00000485550 SCRIBQ14160 1630 aa21.98■■□□□ 1.11
HMGN1-215ENST00000485550 EIF4G1Q04637 1599 aaKnown RBP21.97■■□□□ 1.11
HMGN1-215ENST00000485550 ZCCHC6Q5VYS8 1495 aaKnown RBP21.95■■□□□ 1.1
HMGN1-215ENST00000485550 DCAF1Q9Y4B6 1507 aa21.9■■□□□ 1.1
HMGN1-215ENST00000485550 DNAJC5Q9H3Z4 198 aa21.75■■□□□ 1.07
HMGN1-215ENST00000485550 CUX2O14529 1486 aa21.26■□□□□ 0.99
HMGN1-215ENST00000485550 ERCC6Q03468 1493 aa21.2■□□□□ 0.98
HMGN1-215ENST00000485550 NCAPD3P42695 1498 aa21.07■□□□□ 0.96
HMGN1-215ENST00000485550 FOXD1Q16676 465 aa20.99■□□□□ 0.95
HMGN1-215ENST00000485550 NESP48681 1621 aa20.97■□□□□ 0.95
HMGN1-215ENST00000485550 ATAD2BQ9ULI0 1458 aa20.97■□□□□ 0.95
HMGN1-215ENST00000485550 HMGXB3Q12766 1538 aa20.89■□□□□ 0.94
HMGN1-215ENST00000485550 SMARCA4P51532 1647 aa20.89■□□□□ 0.93
HMGN1-215ENST00000485550 SMARCA2P51531 1590 aa20.89■□□□□ 0.93
HMGN1-215ENST00000485550 THOC2Q8NI27 1593 aaKnown RBP20.84■□□□□ 0.93
HMGN1-215ENST00000485550 BAZ1BQ9UIG0 1483 aaKnown RBP20.76■□□□□ 0.91
HMGN1-215ENST00000485550 KIF21AQ7Z4S6 1674 aa20.76■□□□□ 0.91
HMGN1-215ENST00000485550 LAMC3Q9Y6N6 1575 aa20.71■□□□□ 0.91
HMGN1-215ENST00000485550 TRIM41Q8WV44 630 aa20.7■□□□□ 0.9
HMGN1-215ENST00000485550 BAZ1AQ9NRL2 1556 aaPredicted RBP20.68■□□□□ 0.9
HMGN1-215ENST00000485550 PEG3Q9GZU2 1588 aa20.63■□□□□ 0.89
HMGN1-215ENST00000485550 PDS5BQ9NTI5 1447 aa20.56■□□□□ 0.88
HMGN1-215ENST00000485550 MROH2BQ7Z745 1585 aa20.52■□□□□ 0.88
HMGN1-215ENST00000485550 MRC2Q9UBG0 1479 aa20.44■□□□□ 0.86
HMGN1-215ENST00000485550 CADPSQ9ULU8 1353 aa20.41■□□□□ 0.86
HMGN1-215ENST00000485550 WDR62O43379 1518 aa20.41■□□□□ 0.86
HMGN1-215ENST00000485550 WIZO95785 1651 aa20.32■□□□□ 0.84
HMGN1-215ENST00000485550 CEP164Q9UPV0 1460 aa20.28■□□□□ 0.84
HMGN1-215ENST00000485550 OSCARQ8IYS5 282 aa20.22■□□□□ 0.83
HMGN1-215ENST00000485550 FANCD2Q9BXW9 1451 aa20.22■□□□□ 0.83
HMGN1-215ENST00000485550 RIMBP3CA6NJZ7 1639 aa20.1■□□□□ 0.81
HMGN1-215ENST00000485550 RIMBP3BA6NNM3 1639 aa20.1■□□□□ 0.81
HMGN1-215ENST00000485550 RIMBP3Q9UFD9 1639 aa20.1■□□□□ 0.81
HMGN1-215ENST00000485550 URB2Q14146 1524 aaKnown RBP20.1■□□□□ 0.81
HMGN1-215ENST00000485550 CFTRP13569 1480 aa20.09■□□□□ 0.81
HMGN1-215ENST00000485550 PRDM2Q13029 1718 aa20.02■□□□□ 0.79
HMGN1-215ENST00000485550 ARHGEF11O15085 1522 aa19.95■□□□□ 0.78
HMGN1-215ENST00000485550 TOP2AP11388 1531 aaKnown RBP19.95■□□□□ 0.78
HMGN1-215ENST00000485550 ZNF608Q9ULD9 1512 aaPredicted RBP19.93■□□□□ 0.78
HMGN1-215ENST00000485550 RSF1Q96T23 1441 aaPredicted RBP19.9■□□□□ 0.78
HMGN1-215ENST00000485550 IFT140Q96RY7 1462 aa19.86■□□□□ 0.77
HMGN1-215ENST00000485550 PLPPR3Q6T4P5 718 aa19.85■□□□□ 0.77
HMGN1-215ENST00000485550 CHD1O14646 1710 aa19.83■□□□□ 0.77
HMGN1-215ENST00000485550 CYB5RLQ6IPT4 315 aa19.82■□□□□ 0.76
HMGN1-215ENST00000485550 EIF4G3O43432 1585 aaKnown RBP19.82■□□□□ 0.76
HMGN1-215ENST00000485550 TOPBP1Q92547 1522 aa19.8■□□□□ 0.76
HMGN1-215ENST00000485550 TRHP20396 242 aaPredicted RBP19.76■□□□□ 0.75
HMGN1-215ENST00000485550 CCDC88BA6NC98 1476 aa19.73■□□□□ 0.75
HMGN1-215ENST00000485550 ARAP1Q96P48 1450 aa19.72■□□□□ 0.75
HMGN1-215ENST00000485550 DNMBPQ6XZF7 1577 aa19.69■□□□□ 0.74
HMGN1-215ENST00000485550 AQRO60306 1485 aaKnown RBP eCLIP19.68■□□□□ 0.743e-11■■■□□ 19.2
HMGN1-215ENST00000485550 TARBP1Q13395 1621 aaKnown RBP19.67■□□□□ 0.74
HMGN1-215ENST00000485550 ABCC8Q09428 1581 aa19.66■□□□□ 0.74
HMGN1-215ENST00000485550 FBLN2P98095 1184 aa19.65■□□□□ 0.74
HMGN1-215ENST00000485550 PPP6R1Q9UPN7 881 aa19.6■□□□□ 0.73
HMGN1-215ENST00000485550 MSH5O43196 834 aa19.59■□□□□ 0.73
HMGN1-215ENST00000485550 PIAS4Q8N2W9 510 aaPredicted RBP19.57■□□□□ 0.72
HMGN1-215ENST00000485550 POLA1P09884 1462 aaPredicted RBP19.56■□□□□ 0.72
HMGN1-215ENST00000485550 ADRA2BP18089 450 aa19.53■□□□□ 0.72
HMGN1-215ENST00000485550 RAD54L2Q9Y4B4 1467 aa19.53■□□□□ 0.72
HMGN1-215ENST00000485550 TDRD9Q8NDG6 1382 aaKnown RBP19.49■□□□□ 0.71
HMGN1-215ENST00000485550 CLASP1Q7Z460 1538 aa19.48■□□□□ 0.71
HMGN1-215ENST00000485550 SNAPC4Q5SXM2 1469 aa19.48■□□□□ 0.71
HMGN1-215ENST00000485550 SOGA1O94964 1423 aa19.45■□□□□ 0.7
HMGN1-215ENST00000485550 SYNJ1O43426 1573 aa19.44■□□□□ 0.7
HMGN1-215ENST00000485550 CHMP7Q8WUX9 453 aaPredicted RBP19.4■□□□□ 0.7
HMGN1-215ENST00000485550 FGD5Q6ZNL6 1462 aa19.39■□□□□ 0.69
HMGN1-215ENST00000485550 WDR97A6NE52 1622 aa19.38■□□□□ 0.69
HMGN1-215ENST00000485550 MAGI1Q96QZ7 1491 aaPredicted RBP19.35■□□□□ 0.69
HMGN1-215ENST00000485550 PBRM1Q86U86 1689 aa19.34■□□□□ 0.69
HMGN1-215ENST00000485550 POTEDQ86YR6 584 aa19.34■□□□□ 0.69
HMGN1-215ENST00000485550 GRIN2BQ13224 1484 aa19.32■□□□□ 0.68
HMGN1-215ENST00000485550 SYNJ2O15056 1496 aa19.31■□□□□ 0.68
HMGN1-215ENST00000485550 CUX1P39880 1505 aa19.3■□□□□ 0.68
HMGN1-215ENST00000485550 GAPVD1Q14C86 1478 aa19.3■□□□□ 0.68
HMGN1-215ENST00000485550 ERCC6L2Q5T890 1561 aa19.2■□□□□ 0.66
HMGN1-215ENST00000485550 ABCA5Q8WWZ7 1642 aa19.17■□□□□ 0.66
HMGN1-215ENST00000485550 SUPT5HO00267 1087 aaKnown RBP19.16■□□□□ 0.66
HMGN1-215ENST00000485550 KIF13AQ9H1H9 1805 aa19.13■□□□□ 0.65
HMGN1-215ENST00000485550 ABCA10Q8WWZ4 1543 aa19.11■□□□□ 0.65
HMGN1-215ENST00000485550 CEP170Q5SW79 1584 aa19.1■□□□□ 0.65
HMGN1-215ENST00000485550 GRIN2AQ12879 1464 aa19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms