RNA–Protein interactions for RNA: ENST00000485439.5

RPL35A-208, Transcript of ribosomal protein L35a, humanhuman

TSL 2

Gene RPL35A, Length 677 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPL35A-208ENST00000485439 NISCHQ9Y2I1 1504 aa19.41■□□□□ 0.7
RPL35A-208ENST00000485439 CCDC180Q9P1Z9 1646 aa17.47■□□□□ 0.39
RPL35A-208ENST00000485439 ABCC9O60706 1549 aa17.17■□□□□ 0.34
RPL35A-208ENST00000485439 RB1CC1Q8TDY2 1594 aa16.48■□□□□ 0.23
RPL35A-208ENST00000485439 NACADO15069 1562 aa16.4■□□□□ 0.22
RPL35A-208ENST00000485439 MYO15BQ96JP2 1530 aa16.23■□□□□ 0.19
RPL35A-208ENST00000485439 UNC13AQ9UPW8 1703 aa16.2■□□□□ 0.18
RPL35A-208ENST00000485439 DCAF8L2P0C7V8 631 aa16.16■□□□□ 0.18
RPL35A-208ENST00000485439 ZCCHC6Q5VYS8 1495 aaKnown RBP16.16■□□□□ 0.18
RPL35A-208ENST00000485439 DCAF1Q9Y4B6 1507 aa16.08■□□□□ 0.16
RPL35A-208ENST00000485439 BICRAQ9NZM4 1560 aa15.98■□□□□ 0.15
RPL35A-208ENST00000485439 PABPN1Q86U42 306 aaKnown RBP eCLIP15.93■□□□□ 0.14
RPL35A-208ENST00000485439 SCRIBQ14160 1630 aa15.86■□□□□ 0.13
RPL35A-208ENST00000485439 DNAJC5BQ9UF47 199 aa15.86■□□□□ 0.13
RPL35A-208ENST00000485439 SHROOM4Q9ULL8 1493 aa15.83■□□□□ 0.12
RPL35A-208ENST00000485439 EIF4G1Q04637 1599 aaKnown RBP15.58■□□□□ 0.09
RPL35A-208ENST00000485439 CC2D2AQ9P2K1 1620 aa15.58■□□□□ 0.09
RPL35A-208ENST00000485439 CECR2Q9BXF3 1484 aa15.46■□□□□ 0.06
RPL35A-208ENST00000485439 SMARCA4P51532 1647 aa15.16■□□□□ 0.02
RPL35A-208ENST00000485439 SMARCA2P51531 1590 aa15.09■□□□□ 0.01
RPL35A-208ENST00000485439 BAZ1AQ9NRL2 1556 aaPredicted RBP15.09■□□□□ 0.01
RPL35A-208ENST00000485439 NCAPD3P42695 1498 aa15.08■□□□□ 0.01
RPL35A-208ENST00000485439 ATAD2BQ9ULI0 1458 aa15.08■□□□□ 0
RPL35A-208ENST00000485439 HMGXB3Q12766 1538 aa15.07■□□□□ 0
RPL35A-208ENST00000485439 PEG3Q9GZU2 1588 aa15.01□□□□□ -0.01
RPL35A-208ENST00000485439 BAZ1BQ9UIG0 1483 aaKnown RBP14.96□□□□□ -0.01
RPL35A-208ENST00000485439 MROH2BQ7Z745 1585 aa14.94□□□□□ -0.02
RPL35A-208ENST00000485439 ERCC6Q03468 1493 aa14.83□□□□□ -0.03
RPL35A-208ENST00000485439 WIZO95785 1651 aa14.81□□□□□ -0.04
RPL35A-208ENST00000485439 NESP48681 1621 aa14.8□□□□□ -0.04
RPL35A-208ENST00000485439 LAMC3Q9Y6N6 1575 aa14.79□□□□□ -0.04
RPL35A-208ENST00000485439 CUX2O14529 1486 aa14.78□□□□□ -0.04
RPL35A-208ENST00000485439 KIF21AQ7Z4S6 1674 aa14.72□□□□□ -0.05
RPL35A-208ENST00000485439 THOC2Q8NI27 1593 aaKnown RBP14.72□□□□□ -0.05
RPL35A-208ENST00000485439 RSF1Q96T23 1441 aaPredicted RBP14.66□□□□□ -0.06
RPL35A-208ENST00000485439 TOP2AP11388 1531 aaKnown RBP14.65□□□□□ -0.06
RPL35A-208ENST00000485439 PDS5BQ9NTI5 1447 aa14.63□□□□□ -0.07
RPL35A-208ENST00000485439 CADPSQ9ULU8 1353 aa14.6□□□□□ -0.07
RPL35A-208ENST00000485439 PRDM2Q13029 1718 aa14.56□□□□□ -0.08
RPL35A-208ENST00000485439 MRC2Q9UBG0 1479 aa14.53□□□□□ -0.08
RPL35A-208ENST00000485439 WDR62O43379 1518 aa14.52□□□□□ -0.08
RPL35A-208ENST00000485439 CFTRP13569 1480 aa14.51□□□□□ -0.09
RPL35A-208ENST00000485439 CEP164Q9UPV0 1460 aa14.51□□□□□ -0.09
RPL35A-208ENST00000485439 FANCD2Q9BXW9 1451 aa14.49□□□□□ -0.09
RPL35A-208ENST00000485439 DNAJC5Q9H3Z4 198 aa14.47□□□□□ -0.09
RPL35A-208ENST00000485439 CCDC88BA6NC98 1476 aa14.41□□□□□ -0.1
RPL35A-208ENST00000485439 URB2Q14146 1524 aaKnown RBP14.36□□□□□ -0.11
RPL35A-208ENST00000485439 TOPBP1Q92547 1522 aa14.25□□□□□ -0.13
RPL35A-208ENST00000485439 DNMBPQ6XZF7 1577 aa14.24□□□□□ -0.13
RPL35A-208ENST00000485439 ABCC8Q09428 1581 aa14.22□□□□□ -0.13
RPL35A-208ENST00000485439 IFT140Q96RY7 1462 aa14.19□□□□□ -0.14
RPL35A-208ENST00000485439 EIF4G3O43432 1585 aaKnown RBP14.15□□□□□ -0.14
RPL35A-208ENST00000485439 ZNF608Q9ULD9 1512 aaPredicted RBP14.14□□□□□ -0.15
RPL35A-208ENST00000485439 TARBP1Q13395 1621 aaKnown RBP14.13□□□□□ -0.15
RPL35A-208ENST00000485439 POLA1P09884 1462 aaPredicted RBP14.1□□□□□ -0.15
RPL35A-208ENST00000485439 CUX1P39880 1505 aa14.05□□□□□ -0.16
RPL35A-208ENST00000485439 SUPT5HO00267 1087 aaKnown RBP14.05□□□□□ -0.16
RPL35A-208ENST00000485439 WDR97A6NE52 1622 aa14.04□□□□□ -0.16
RPL35A-208ENST00000485439 CHD1O14646 1710 aa14.04□□□□□ -0.16
RPL35A-208ENST00000485439 FGD5Q6ZNL6 1462 aa14.04□□□□□ -0.16
RPL35A-208ENST00000485439 OSCARQ8IYS5 282 aa14.01□□□□□ -0.17
RPL35A-208ENST00000485439 RAD54L2Q9Y4B4 1467 aa14□□□□□ -0.17
RPL35A-208ENST00000485439 AQRO60306 1485 aaKnown RBP eCLIP13.99□□□□□ -0.171e-7■■■■■ 32.4
RPL35A-208ENST00000485439 SOGA1O94964 1423 aa13.98□□□□□ -0.17
RPL35A-208ENST00000485439 PBRM1Q86U86 1689 aa13.96□□□□□ -0.17
RPL35A-208ENST00000485439 RIMBP3CA6NJZ7 1639 aa13.95□□□□□ -0.18
RPL35A-208ENST00000485439 RIMBP3BA6NNM3 1639 aa13.95□□□□□ -0.18
RPL35A-208ENST00000485439 RIMBP3Q9UFD9 1639 aa13.95□□□□□ -0.18
RPL35A-208ENST00000485439 BIVM-ERCC5R4GMW8 1640 aa13.93□□□□□ -0.18
RPL35A-208ENST00000485439 TDRD9Q8NDG6 1382 aaKnown RBP13.92□□□□□ -0.18
RPL35A-208ENST00000485439 SNAPC4Q5SXM2 1469 aa13.92□□□□□ -0.18
RPL35A-208ENST00000485439 ABCA5Q8WWZ7 1642 aa13.91□□□□□ -0.18
RPL35A-208ENST00000485439 TRIM41Q8WV44 630 aa13.91□□□□□ -0.18
RPL35A-208ENST00000485439 MAGI1Q96QZ7 1491 aaPredicted RBP13.9□□□□□ -0.18
RPL35A-208ENST00000485439 TOP2BQ02880 1626 aa13.9□□□□□ -0.19
RPL35A-208ENST00000485439 ARHGEF11O15085 1522 aa13.9□□□□□ -0.19
RPL35A-208ENST00000485439 ABCA10Q8WWZ4 1543 aa13.9□□□□□ -0.19
RPL35A-208ENST00000485439 GRIN2BQ13224 1484 aa13.89□□□□□ -0.19
RPL35A-208ENST00000485439 SYNJ1O43426 1573 aa13.88□□□□□ -0.19
RPL35A-208ENST00000485439 GAPVD1Q14C86 1478 aa13.87□□□□□ -0.19
RPL35A-208ENST00000485439 WRNQ14191 1432 aaPredicted RBP eCLIP13.85□□□□□ -0.19
RPL35A-208ENST00000485439 SYNJ2O15056 1496 aa13.84□□□□□ -0.19
RPL35A-208ENST00000485439 CLASP1Q7Z460 1538 aa13.84□□□□□ -0.19
RPL35A-208ENST00000485439 FBLN2P98095 1184 aa13.82□□□□□ -0.2
RPL35A-208ENST00000485439 ADAMTS12P58397 1594 aa13.8□□□□□ -0.2
RPL35A-208ENST00000485439 ARAP1Q96P48 1450 aa13.77□□□□□ -0.21
RPL35A-208ENST00000485439 CHMP7Q8WUX9 453 aaPredicted RBP13.76□□□□□ -0.21
RPL35A-208ENST00000485439 ERICH3Q5RHP9 1530 aa13.74□□□□□ -0.21
RPL35A-208ENST00000485439 GRIN2AQ12879 1464 aa13.73□□□□□ -0.21
RPL35A-208ENST00000485439 CEP170Q5SW79 1584 aa13.7□□□□□ -0.22
RPL35A-208ENST00000485439 FHAD1B1AJZ9 1412 aa13.68□□□□□ -0.22
RPL35A-208ENST00000485439 NUP160Q12769 1436 aa13.67□□□□□ -0.22
RPL35A-208ENST00000485439 CYB5RLQ6IPT4 315 aa13.67□□□□□ -0.22
RPL35A-208ENST00000485439 SHROOM2Q13796 1616 aa13.64□□□□□ -0.23
RPL35A-208ENST00000485439 AEBP2Q6ZN18 517 aaPredicted RBP13.62□□□□□ -0.23
RPL35A-208ENST00000485439 CUL7Q14999 1698 aa13.62□□□□□ -0.23
RPL35A-208ENST00000485439 RUSC2Q8N2Y8 1516 aa13.6□□□□□ -0.23
RPL35A-208ENST00000485439 ERCC6L2Q5T890 1561 aa13.6□□□□□ -0.23
RPL35A-208ENST00000485439 KIF27Q86VH2 1401 aa13.57□□□□□ -0.24
RPL35A-208ENST00000485439 IGF1RP08069 1367 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms