RNA–Protein interactions for RNA: ENST00000485397.1

COL27A1-205, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 5

Gene COL27A1, Length 463 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-205ENST00000485397 NISCHQ9Y2I1 1504 aa48.17■■■■■ 5.3
COL27A1-205ENST00000485397 ABCC9O60706 1549 aa43.21■■■■■ 4.51
COL27A1-205ENST00000485397 CCDC180Q9P1Z9 1646 aa43.11■■■■■ 4.49
COL27A1-205ENST00000485397 RB1CC1Q8TDY2 1594 aa41.06■■■■■ 4.16
COL27A1-205ENST00000485397 NACADO15069 1562 aa40.79■■■■■ 4.12
COL27A1-205ENST00000485397 DCAF8L2P0C7V8 631 aa40.75■■■■■ 4.11
COL27A1-205ENST00000485397 DNAJC5BQ9UF47 199 aa40.56■■■■■ 4.08
COL27A1-205ENST00000485397 PABPN1Q86U42 306 aaKnown RBP eCLIP40.3■■■■■ 4.043e-11■■■■■ 29.8
COL27A1-205ENST00000485397 MYO15BQ96JP2 1530 aa40.22■■■■■ 4.03
COL27A1-205ENST00000485397 UNC13AQ9UPW8 1703 aa40.11■■■■■ 4.01
COL27A1-205ENST00000485397 ZCCHC6Q5VYS8 1495 aaKnown RBP39.92■■■■□ 3.98
COL27A1-205ENST00000485397 BICRAQ9NZM4 1560 aa39.91■■■■□ 3.98
COL27A1-205ENST00000485397 DCAF1Q9Y4B6 1507 aa39.74■■■■□ 3.95
COL27A1-205ENST00000485397 SCRIBQ14160 1630 aa39.37■■■■□ 3.89
COL27A1-205ENST00000485397 SHROOM4Q9ULL8 1493 aa39.29■■■■□ 3.88
COL27A1-205ENST00000485397 CC2D2AQ9P2K1 1620 aa38.99■■■■□ 3.83
COL27A1-205ENST00000485397 EIF4G1Q04637 1599 aaKnown RBP38.91■■■■□ 3.82
COL27A1-205ENST00000485397 CECR2Q9BXF3 1484 aa38.9■■■■□ 3.82
COL27A1-205ENST00000485397 NCAPD3P42695 1498 aa37.7■■■■□ 3.63
COL27A1-205ENST00000485397 ATAD2BQ9ULI0 1458 aa37.6■■■■□ 3.61
COL27A1-205ENST00000485397 SMARCA4P51532 1647 aa37.54■■■■□ 3.6
COL27A1-205ENST00000485397 SMARCA2P51531 1590 aa37.45■■■■□ 3.59
COL27A1-205ENST00000485397 HMGXB3Q12766 1538 aa37.38■■■■□ 3.57
COL27A1-205ENST00000485397 BAZ1AQ9NRL2 1556 aaPredicted RBP37.35■■■■□ 3.57
COL27A1-205ENST00000485397 ERCC6Q03468 1493 aa37.27■■■■□ 3.56
COL27A1-205ENST00000485397 BAZ1BQ9UIG0 1483 aaKnown RBP37.22■■■■□ 3.55
COL27A1-205ENST00000485397 DNAJC5Q9H3Z4 198 aa37.17■■■■□ 3.54
COL27A1-205ENST00000485397 CUX2O14529 1486 aa37.15■■■■□ 3.54
COL27A1-205ENST00000485397 PEG3Q9GZU2 1588 aa37.15■■■■□ 3.54
COL27A1-205ENST00000485397 MROH2BQ7Z745 1585 aa37.14■■■■□ 3.54
COL27A1-205ENST00000485397 NESP48681 1621 aa37.14■■■■□ 3.54
COL27A1-205ENST00000485397 LAMC3Q9Y6N6 1575 aa36.79■■■■□ 3.48
COL27A1-205ENST00000485397 THOC2Q8NI27 1593 aaKnown RBP36.68■■■■□ 3.46
COL27A1-205ENST00000485397 WIZO95785 1651 aa36.67■■■■□ 3.46
COL27A1-205ENST00000485397 PDS5BQ9NTI5 1447 aa36.62■■■■□ 3.45
COL27A1-205ENST00000485397 KIF21AQ7Z4S6 1674 aa36.58■■■■□ 3.45
COL27A1-205ENST00000485397 CADPSQ9ULU8 1353 aa36.58■■■■□ 3.45
COL27A1-205ENST00000485397 RSF1Q96T23 1441 aaPredicted RBP36.4■■■■□ 3.42
COL27A1-205ENST00000485397 MRC2Q9UBG0 1479 aa36.31■■■■□ 3.4
COL27A1-205ENST00000485397 WDR62O43379 1518 aa36.19■■■■□ 3.38
COL27A1-205ENST00000485397 TOP2AP11388 1531 aaKnown RBP36.19■■■■□ 3.38
COL27A1-205ENST00000485397 CEP164Q9UPV0 1460 aa36.17■■■■□ 3.38
COL27A1-205ENST00000485397 CFTRP13569 1480 aa36.15■■■■□ 3.38
COL27A1-205ENST00000485397 FANCD2Q9BXW9 1451 aa36.15■■■■□ 3.38
COL27A1-205ENST00000485397 URB2Q14146 1524 aaKnown RBP35.86■■■■□ 3.33
COL27A1-205ENST00000485397 CCDC88BA6NC98 1476 aa35.83■■■■□ 3.33
COL27A1-205ENST00000485397 PRDM2Q13029 1718 aa35.68■■■■□ 3.3
COL27A1-205ENST00000485397 TRIM41Q8WV44 630 aa35.59■■■■□ 3.29
COL27A1-205ENST00000485397 OSCARQ8IYS5 282 aa35.54■■■■□ 3.28
COL27A1-205ENST00000485397 TOPBP1Q92547 1522 aa35.47■■■■□ 3.27
COL27A1-205ENST00000485397 IFT140Q96RY7 1462 aa35.45■■■■□ 3.27
COL27A1-205ENST00000485397 ZNF608Q9ULD9 1512 aaPredicted RBP35.43■■■■□ 3.26
COL27A1-205ENST00000485397 ABCC8Q09428 1581 aa35.35■■■■□ 3.25
COL27A1-205ENST00000485397 DNMBPQ6XZF7 1577 aa35.31■■■■□ 3.24
COL27A1-205ENST00000485397 EIF4G3O43432 1585 aaKnown RBP35.17■■■■□ 3.22
COL27A1-205ENST00000485397 TARBP1Q13395 1621 aaKnown RBP35.13■■■■□ 3.21
COL27A1-205ENST00000485397 AQRO60306 1485 aaKnown RBP eCLIP35.12■■■■□ 3.211e-9■■■□□ 19
COL27A1-205ENST00000485397 POLA1P09884 1462 aaPredicted RBP35.11■■■■□ 3.21
COL27A1-205ENST00000485397 RAD54L2Q9Y4B4 1467 aa35.03■■■■□ 3.2
COL27A1-205ENST00000485397 RIMBP3CA6NJZ7 1639 aa35.02■■■■□ 3.2
COL27A1-205ENST00000485397 RIMBP3BA6NNM3 1639 aa35.02■■■■□ 3.2
COL27A1-205ENST00000485397 RIMBP3Q9UFD9 1639 aa35.02■■■■□ 3.2
COL27A1-205ENST00000485397 SOGA1O94964 1423 aa34.98■■■■□ 3.19
COL27A1-205ENST00000485397 ARHGEF11O15085 1522 aa34.93■■■■□ 3.18
COL27A1-205ENST00000485397 TDRD9Q8NDG6 1382 aaKnown RBP34.92■■■■□ 3.18
COL27A1-205ENST00000485397 FBLN2P98095 1184 aa34.91■■■■□ 3.18
COL27A1-205ENST00000485397 FGD5Q6ZNL6 1462 aa34.9■■■■□ 3.18
COL27A1-205ENST00000485397 CHD1O14646 1710 aa34.89■■■■□ 3.18
COL27A1-205ENST00000485397 CUX1P39880 1505 aa34.88■■■■□ 3.17
COL27A1-205ENST00000485397 SUPT5HO00267 1087 aaKnown RBP34.88■■■■□ 3.17
COL27A1-205ENST00000485397 SNAPC4Q5SXM2 1469 aa34.74■■■■□ 3.15
COL27A1-205ENST00000485397 CYB5RLQ6IPT4 315 aa34.74■■■■□ 3.15
COL27A1-205ENST00000485397 WDR97A6NE52 1622 aa34.7■■■■□ 3.15
COL27A1-205ENST00000485397 CHMP7Q8WUX9 453 aaPredicted RBP34.64■■■■□ 3.14
COL27A1-205ENST00000485397 GRIN2BQ13224 1484 aa34.64■■■■□ 3.14
COL27A1-205ENST00000485397 MAGI1Q96QZ7 1491 aaPredicted RBP34.61■■■■□ 3.13
COL27A1-205ENST00000485397 ARAP1Q96P48 1450 aa34.6■■■■□ 3.13
COL27A1-205ENST00000485397 GAPVD1Q14C86 1478 aa34.53■■■■□ 3.12
COL27A1-205ENST00000485397 CLASP1Q7Z460 1538 aa34.51■■■■□ 3.12
COL27A1-205ENST00000485397 SYNJ2O15056 1496 aa34.51■■■■□ 3.11
COL27A1-205ENST00000485397 ABCA10Q8WWZ4 1543 aa34.49■■■■□ 3.11
COL27A1-205ENST00000485397 SYNJ1O43426 1573 aa34.49■■■■□ 3.11
COL27A1-205ENST00000485397 PBRM1Q86U86 1689 aa34.45■■■■□ 3.11
COL27A1-205ENST00000485397 ABCA5Q8WWZ7 1642 aa34.41■■■■□ 3.1
COL27A1-205ENST00000485397 WRNQ14191 1432 aaPredicted RBP eCLIP34.37■■■■□ 3.09
COL27A1-205ENST00000485397 TRHP20396 242 aaPredicted RBP34.33■■■■□ 3.09
COL27A1-205ENST00000485397 TOP2BQ02880 1626 aa34.29■■■■□ 3.08
COL27A1-205ENST00000485397 BIVM-ERCC5R4GMW8 1640 aa34.28■■■■□ 3.08
COL27A1-205ENST00000485397 GRIN2AQ12879 1464 aa34.19■■■■□ 3.06
COL27A1-205ENST00000485397 ADAMTS12P58397 1594 aa34.15■■■■□ 3.06
COL27A1-205ENST00000485397 FHAD1B1AJZ9 1412 aa34.09■■■■□ 3.05
COL27A1-205ENST00000485397 NUP160Q12769 1436 aa34.08■■■■□ 3.05
COL27A1-205ENST00000485397 CEP170Q5SW79 1584 aa34.06■■■■□ 3.04
COL27A1-205ENST00000485397 ERICH3Q5RHP9 1530 aa34.04■■■■□ 3.04
COL27A1-205ENST00000485397 ERCC6L2Q5T890 1561 aa34.03■■■■□ 3.04
COL27A1-205ENST00000485397 SHROOM2Q13796 1616 aa33.88■■■■□ 3.01
COL27A1-205ENST00000485397 JPH4Q96JJ6 628 aa33.78■■■■□ 3
COL27A1-205ENST00000485397 PRG4Q92954 1404 aaPredicted RBP33.78■■■■□ 3
COL27A1-205ENST00000485397 IGF1RP08069 1367 aa33.69■■■□□ 2.98
COL27A1-205ENST00000485397 KIF27Q86VH2 1401 aa33.66■■■□□ 2.98
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms