RNA–Protein interactions for RNA: ENST00000485367.5

DDX56-212, Transcript of DEAD-box helicase 56, humanhuman

TSL 5

Gene DDX56, Length 1,781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-212ENST00000485367 NISCHQ9Y2I1 1504 aa26■■□□□ 1.75
DDX56-212ENST00000485367 CCDC180Q9P1Z9 1646 aa23.21■■□□□ 1.31
DDX56-212ENST00000485367 ABCC9O60706 1549 aa23.01■■□□□ 1.27
DDX56-212ENST00000485367 RB1CC1Q8TDY2 1594 aa21.99■■□□□ 1.11
DDX56-212ENST00000485367 DCAF8L2P0C7V8 631 aa21.92■■□□□ 1.1
DDX56-212ENST00000485367 NACADO15069 1562 aa21.89■■□□□ 1.09
DDX56-212ENST00000485367 MYO15BQ96JP2 1530 aa21.63■■□□□ 1.05
DDX56-212ENST00000485367 ZCCHC6Q5VYS8 1495 aaKnown RBP21.58■■□□□ 1.05
DDX56-212ENST00000485367 UNC13AQ9UPW8 1703 aa21.5■■□□□ 1.03
DDX56-212ENST00000485367 PABPN1Q86U42 306 aaKnown RBP eCLIP21.48■■□□□ 1.036e-7■■■■□ 20.9
DDX56-212ENST00000485367 DCAF1Q9Y4B6 1507 aa21.46■■□□□ 1.03
DDX56-212ENST00000485367 DNAJC5BQ9UF47 199 aa21.35■■□□□ 1.01
DDX56-212ENST00000485367 BICRAQ9NZM4 1560 aa21.32■■□□□ 1
DDX56-212ENST00000485367 SCRIBQ14160 1630 aa21.2■□□□□ 0.98
DDX56-212ENST00000485367 SHROOM4Q9ULL8 1493 aa21.03■□□□□ 0.96
DDX56-212ENST00000485367 EIF4G1Q04637 1599 aaKnown RBP20.79■□□□□ 0.92
DDX56-212ENST00000485367 CC2D2AQ9P2K1 1620 aa20.78■□□□□ 0.92
DDX56-212ENST00000485367 CECR2Q9BXF3 1484 aa20.68■□□□□ 0.9
DDX56-212ENST00000485367 SMARCA4P51532 1647 aa20.23■□□□□ 0.83
DDX56-212ENST00000485367 NCAPD3P42695 1498 aa20.19■□□□□ 0.82
DDX56-212ENST00000485367 ATAD2BQ9ULI0 1458 aa20.18■□□□□ 0.82
DDX56-212ENST00000485367 BAZ1AQ9NRL2 1556 aaPredicted RBP20.17■□□□□ 0.82
DDX56-212ENST00000485367 SMARCA2P51531 1590 aa20.14■□□□□ 0.81
DDX56-212ENST00000485367 HMGXB3Q12766 1538 aa20.06■□□□□ 0.8
DDX56-212ENST00000485367 MROH2BQ7Z745 1585 aa20.04■□□□□ 0.8
DDX56-212ENST00000485367 BAZ1BQ9UIG0 1483 aaKnown RBP20.01■□□□□ 0.79
DDX56-212ENST00000485367 PEG3Q9GZU2 1588 aa20■□□□□ 0.79
DDX56-212ENST00000485367 ERCC6Q03468 1493 aa19.84■□□□□ 0.77
DDX56-212ENST00000485367 WIZO95785 1651 aa19.83■□□□□ 0.77
DDX56-212ENST00000485367 NESP48681 1621 aa19.83■□□□□ 0.76
DDX56-212ENST00000485367 RSF1Q96T23 1441 aaPredicted RBP19.72■□□□□ 0.75
DDX56-212ENST00000485367 LAMC3Q9Y6N6 1575 aa19.71■□□□□ 0.75
DDX56-212ENST00000485367 CUX2O14529 1486 aa19.68■□□□□ 0.74
DDX56-212ENST00000485367 CADPSQ9ULU8 1353 aa19.61■□□□□ 0.73
DDX56-212ENST00000485367 PDS5BQ9NTI5 1447 aa19.6■□□□□ 0.73
DDX56-212ENST00000485367 KIF21AQ7Z4S6 1674 aa19.59■□□□□ 0.73
DDX56-212ENST00000485367 TOP2AP11388 1531 aaKnown RBP19.58■□□□□ 0.72
DDX56-212ENST00000485367 THOC2Q8NI27 1593 aaKnown RBP19.55■□□□□ 0.72
DDX56-212ENST00000485367 CFTRP13569 1480 aa19.43■□□□□ 0.7
DDX56-212ENST00000485367 MRC2Q9UBG0 1479 aa19.42■□□□□ 0.7
DDX56-212ENST00000485367 DNAJC5Q9H3Z4 198 aa19.41■□□□□ 0.7
DDX56-212ENST00000485367 FANCD2Q9BXW9 1451 aa19.39■□□□□ 0.69
DDX56-212ENST00000485367 CEP164Q9UPV0 1460 aa19.39■□□□□ 0.69
DDX56-212ENST00000485367 CCDC88BA6NC98 1476 aa19.37■□□□□ 0.69
DDX56-212ENST00000485367 WDR62O43379 1518 aa19.34■□□□□ 0.69
DDX56-212ENST00000485367 PRDM2Q13029 1718 aa19.27■□□□□ 0.68
DDX56-212ENST00000485367 URB2Q14146 1524 aaKnown RBP19.21■□□□□ 0.67
DDX56-212ENST00000485367 SUPT5HO00267 1087 aaKnown RBP19.11■□□□□ 0.65
DDX56-212ENST00000485367 TOPBP1Q92547 1522 aa19.05■□□□□ 0.64
DDX56-212ENST00000485367 ABCC8Q09428 1581 aa19.02■□□□□ 0.64
DDX56-212ENST00000485367 DNMBPQ6XZF7 1577 aa19■□□□□ 0.63
DDX56-212ENST00000485367 IFT140Q96RY7 1462 aa18.99■□□□□ 0.63
DDX56-212ENST00000485367 ZNF608Q9ULD9 1512 aaPredicted RBP18.94■□□□□ 0.62
DDX56-212ENST00000485367 OSCARQ8IYS5 282 aa18.87■□□□□ 0.61
DDX56-212ENST00000485367 POLA1P09884 1462 aaPredicted RBP18.87■□□□□ 0.61
DDX56-212ENST00000485367 TARBP1Q13395 1621 aaKnown RBP18.86■□□□□ 0.61
DDX56-212ENST00000485367 EIF4G3O43432 1585 aaKnown RBP18.85■□□□□ 0.61
DDX56-212ENST00000485367 CUX1P39880 1505 aa18.82■□□□□ 0.6
DDX56-212ENST00000485367 AQRO60306 1485 aaKnown RBP eCLIP18.81■□□□□ 0.62e-7■■■■□ 22.4
DDX56-212ENST00000485367 RAD54L2Q9Y4B4 1467 aa18.81■□□□□ 0.6
DDX56-212ENST00000485367 SOGA1O94964 1423 aa18.81■□□□□ 0.6
DDX56-212ENST00000485367 FGD5Q6ZNL6 1462 aa18.8■□□□□ 0.6
DDX56-212ENST00000485367 TDRD9Q8NDG6 1382 aaKnown RBP18.74■□□□□ 0.59
DDX56-212ENST00000485367 TRIM41Q8WV44 630 aa18.72■□□□□ 0.59
DDX56-212ENST00000485367 FBLN2P98095 1184 aa18.68■□□□□ 0.58
DDX56-212ENST00000485367 CHD1O14646 1710 aa18.68■□□□□ 0.58
DDX56-212ENST00000485367 WDR97A6NE52 1622 aa18.66■□□□□ 0.58
DDX56-212ENST00000485367 SNAPC4Q5SXM2 1469 aa18.62■□□□□ 0.57
DDX56-212ENST00000485367 WRNQ14191 1432 aaPredicted RBP eCLIP18.61■□□□□ 0.57
DDX56-212ENST00000485367 GRIN2BQ13224 1484 aa18.6■□□□□ 0.57
DDX56-212ENST00000485367 RIMBP3CA6NJZ7 1639 aa18.58■□□□□ 0.57
DDX56-212ENST00000485367 RIMBP3BA6NNM3 1639 aa18.58■□□□□ 0.57
DDX56-212ENST00000485367 RIMBP3Q9UFD9 1639 aa18.58■□□□□ 0.57
DDX56-212ENST00000485367 ABCA10Q8WWZ4 1543 aa18.58■□□□□ 0.57
DDX56-212ENST00000485367 SYNJ1O43426 1573 aa18.58■□□□□ 0.56
DDX56-212ENST00000485367 GAPVD1Q14C86 1478 aa18.58■□□□□ 0.56
DDX56-212ENST00000485367 TOP2BQ02880 1626 aa18.58■□□□□ 0.56
DDX56-212ENST00000485367 BIVM-ERCC5R4GMW8 1640 aa18.58■□□□□ 0.56
DDX56-212ENST00000485367 MAGI1Q96QZ7 1491 aaPredicted RBP18.57■□□□□ 0.56
DDX56-212ENST00000485367 CHMP7Q8WUX9 453 aaPredicted RBP18.56■□□□□ 0.56
DDX56-212ENST00000485367 PBRM1Q86U86 1689 aa18.56■□□□□ 0.56
DDX56-212ENST00000485367 ARHGEF11O15085 1522 aa18.54■□□□□ 0.56
DDX56-212ENST00000485367 ABCA5Q8WWZ7 1642 aa18.53■□□□□ 0.56
DDX56-212ENST00000485367 SYNJ2O15056 1496 aa18.51■□□□□ 0.55
DDX56-212ENST00000485367 CLASP1Q7Z460 1538 aa18.44■□□□□ 0.54
DDX56-212ENST00000485367 CYB5RLQ6IPT4 315 aa18.43■□□□□ 0.54
DDX56-212ENST00000485367 ADAMTS12P58397 1594 aa18.38■□□□□ 0.53
DDX56-212ENST00000485367 ARAP1Q96P48 1450 aa18.37■□□□□ 0.53
DDX56-212ENST00000485367 GRIN2AQ12879 1464 aa18.36■□□□□ 0.53
DDX56-212ENST00000485367 ERICH3Q5RHP9 1530 aa18.35■□□□□ 0.53
DDX56-212ENST00000485367 FHAD1B1AJZ9 1412 aa18.34■□□□□ 0.53
DDX56-212ENST00000485367 CEP170Q5SW79 1584 aa18.28■□□□□ 0.52
DDX56-212ENST00000485367 NUP160Q12769 1436 aa18.27■□□□□ 0.52
DDX56-212ENST00000485367 KIF27Q86VH2 1401 aa18.24■□□□□ 0.51
DDX56-212ENST00000485367 IGF1RP08069 1367 aa18.2■□□□□ 0.5
DDX56-212ENST00000485367 ERCC6L2Q5T890 1561 aa18.19■□□□□ 0.5
DDX56-212ENST00000485367 SHROOM2Q13796 1616 aa18.16■□□□□ 0.5
DDX56-212ENST00000485367 TRHP20396 242 aaPredicted RBP18.16■□□□□ 0.5
DDX56-212ENST00000485367 CUL7Q14999 1698 aa18.15■□□□□ 0.5
DDX56-212ENST00000485367 JPH4Q96JJ6 628 aa18.12■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms