RNA–Protein interactions for RNA: ENST00000485363.1

SIK3-211, Transcript of SIK family kinase 3, humanhuman

TSL 1 (best)

Gene SIK3, Length 764 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIK3-211ENST00000485363 NISCHQ9Y2I1 1504 aa39.33■■■■□ 3.89
SIK3-211ENST00000485363 CCDC180Q9P1Z9 1646 aa35.19■■■■□ 3.22
SIK3-211ENST00000485363 ABCC9O60706 1549 aa34.86■■■■□ 3.17
SIK3-211ENST00000485363 RB1CC1Q8TDY2 1594 aa33.36■■■□□ 2.93
SIK3-211ENST00000485363 NACADO15069 1562 aa33.2■■■□□ 2.91
SIK3-211ENST00000485363 DCAF8L2P0C7V8 631 aa33.07■■■□□ 2.88
SIK3-211ENST00000485363 MYO15BQ96JP2 1530 aa32.84■■■□□ 2.85
SIK3-211ENST00000485363 ZCCHC6Q5VYS8 1495 aaKnown RBP32.65■■■□□ 2.82
SIK3-211ENST00000485363 UNC13AQ9UPW8 1703 aa32.6■■■□□ 2.81
SIK3-211ENST00000485363 DCAF1Q9Y4B6 1507 aa32.52■■■□□ 2.8
SIK3-211ENST00000485363 PABPN1Q86U42 306 aaKnown RBP eCLIP32.5■■■□□ 2.79
SIK3-211ENST00000485363 DNAJC5BQ9UF47 199 aa32.41■■■□□ 2.78
SIK3-211ENST00000485363 BICRAQ9NZM4 1560 aa32.33■■■□□ 2.77
SIK3-211ENST00000485363 SCRIBQ14160 1630 aa32.06■■■□□ 2.72
SIK3-211ENST00000485363 SHROOM4Q9ULL8 1493 aa31.98■■■□□ 2.71
SIK3-211ENST00000485363 EIF4G1Q04637 1599 aaKnown RBP31.54■■■□□ 2.64
SIK3-211ENST00000485363 CC2D2AQ9P2K1 1620 aa31.53■■■□□ 2.64
SIK3-211ENST00000485363 CECR2Q9BXF3 1484 aa31.39■■■□□ 2.62
SIK3-211ENST00000485363 NCAPD3P42695 1498 aa30.63■■■□□ 2.49
SIK3-211ENST00000485363 SMARCA4P51532 1647 aa30.62■■■□□ 2.49
SIK3-211ENST00000485363 ATAD2BQ9ULI0 1458 aa30.57■■■□□ 2.48
SIK3-211ENST00000485363 SMARCA2P51531 1590 aa30.53■■■□□ 2.48
SIK3-211ENST00000485363 BAZ1AQ9NRL2 1556 aaPredicted RBP30.53■■■□□ 2.48
SIK3-211ENST00000485363 HMGXB3Q12766 1538 aa30.43■■■□□ 2.46
SIK3-211ENST00000485363 PEG3Q9GZU2 1588 aa30.32■■■□□ 2.45
SIK3-211ENST00000485363 BAZ1BQ9UIG0 1483 aaKnown RBP30.31■■■□□ 2.44
SIK3-211ENST00000485363 MROH2BQ7Z745 1585 aa30.29■■■□□ 2.44
SIK3-211ENST00000485363 ERCC6Q03468 1493 aa30.12■■■□□ 2.41
SIK3-211ENST00000485363 NESP48681 1621 aa30.03■■■□□ 2.4
SIK3-211ENST00000485363 CUX2O14529 1486 aa29.96■■■□□ 2.39
SIK3-211ENST00000485363 WIZO95785 1651 aa29.95■■■□□ 2.39
SIK3-211ENST00000485363 LAMC3Q9Y6N6 1575 aa29.91■■■□□ 2.38
SIK3-211ENST00000485363 RSF1Q96T23 1441 aaPredicted RBP29.78■■■□□ 2.36
SIK3-211ENST00000485363 PDS5BQ9NTI5 1447 aa29.72■■■□□ 2.35
SIK3-211ENST00000485363 CADPSQ9ULU8 1353 aa29.71■■■□□ 2.35
SIK3-211ENST00000485363 THOC2Q8NI27 1593 aaKnown RBP29.69■■■□□ 2.34
SIK3-211ENST00000485363 KIF21AQ7Z4S6 1674 aa29.68■■■□□ 2.34
SIK3-211ENST00000485363 TOP2AP11388 1531 aaKnown RBP29.61■■■□□ 2.33
SIK3-211ENST00000485363 DNAJC5Q9H3Z4 198 aa29.58■■■□□ 2.33
SIK3-211ENST00000485363 MRC2Q9UBG0 1479 aa29.44■■■□□ 2.3
SIK3-211ENST00000485363 CFTRP13569 1480 aa29.43■■■□□ 2.3
SIK3-211ENST00000485363 CEP164Q9UPV0 1460 aa29.39■■■□□ 2.3
SIK3-211ENST00000485363 FANCD2Q9BXW9 1451 aa29.37■■■□□ 2.29
SIK3-211ENST00000485363 WDR62O43379 1518 aa29.35■■■□□ 2.29
SIK3-211ENST00000485363 CCDC88BA6NC98 1476 aa29.25■■■□□ 2.27
SIK3-211ENST00000485363 PRDM2Q13029 1718 aa29.2■■■□□ 2.27
SIK3-211ENST00000485363 URB2Q14146 1524 aaKnown RBP29.1■■■□□ 2.25
SIK3-211ENST00000485363 TOPBP1Q92547 1522 aa28.84■■■□□ 2.21
SIK3-211ENST00000485363 ABCC8Q09428 1581 aa28.84■■■□□ 2.21
SIK3-211ENST00000485363 IFT140Q96RY7 1462 aa28.79■■■□□ 2.2
SIK3-211ENST00000485363 DNMBPQ6XZF7 1577 aa28.78■■■□□ 2.2
SIK3-211ENST00000485363 SUPT5HO00267 1087 aaKnown RBP28.69■■■□□ 2.18
SIK3-211ENST00000485363 ZNF608Q9ULD9 1512 aaPredicted RBP28.69■■■□□ 2.18
SIK3-211ENST00000485363 OSCARQ8IYS5 282 aa28.64■■■□□ 2.18
SIK3-211ENST00000485363 POLA1P09884 1462 aaPredicted RBP28.57■■■□□ 2.16
SIK3-211ENST00000485363 EIF4G3O43432 1585 aaKnown RBP28.57■■■□□ 2.16
SIK3-211ENST00000485363 TARBP1Q13395 1621 aaKnown RBP28.57■■■□□ 2.16
SIK3-211ENST00000485363 AQRO60306 1485 aaKnown RBP eCLIP28.46■■■□□ 2.15
SIK3-211ENST00000485363 SOGA1O94964 1423 aa28.45■■■□□ 2.15
SIK3-211ENST00000485363 RAD54L2Q9Y4B4 1467 aa28.45■■■□□ 2.14
SIK3-211ENST00000485363 CUX1P39880 1505 aa28.44■■■□□ 2.14
SIK3-211ENST00000485363 FGD5Q6ZNL6 1462 aa28.43■■■□□ 2.14
SIK3-211ENST00000485363 TRIM41Q8WV44 630 aa28.41■■■□□ 2.14
SIK3-211ENST00000485363 TDRD9Q8NDG6 1382 aaKnown RBP28.35■■■□□ 2.13
SIK3-211ENST00000485363 WDR97A6NE52 1622 aa28.34■■■□□ 2.13
SIK3-211ENST00000485363 CHD1O14646 1710 aa28.31■■■□□ 2.12
SIK3-211ENST00000485363 FBLN2P98095 1184 aa28.24■■■□□ 2.11
SIK3-211ENST00000485363 RIMBP3CA6NJZ7 1639 aa28.23■■■□□ 2.11
SIK3-211ENST00000485363 RIMBP3BA6NNM3 1639 aa28.23■■■□□ 2.11
SIK3-211ENST00000485363 RIMBP3Q9UFD9 1639 aa28.23■■■□□ 2.11
SIK3-211ENST00000485363 SNAPC4Q5SXM2 1469 aa28.21■■■□□ 2.11
SIK3-211ENST00000485363 GRIN2BQ13224 1484 aa28.18■■■□□ 2.1
SIK3-211ENST00000485363 ARHGEF11O15085 1522 aa28.17■■■□□ 2.1
SIK3-211ENST00000485363 MAGI1Q96QZ7 1491 aaPredicted RBP28.15■■■□□ 2.1
SIK3-211ENST00000485363 ABCA10Q8WWZ4 1543 aa28.13■■■□□ 2.09
SIK3-211ENST00000485363 GAPVD1Q14C86 1478 aa28.12■■■□□ 2.09
SIK3-211ENST00000485363 WRNQ14191 1432 aaPredicted RBP eCLIP28.1■■■□□ 2.09
SIK3-211ENST00000485363 CHMP7Q8WUX9 453 aaPredicted RBP28.1■■■□□ 2.09
SIK3-211ENST00000485363 TOP2BQ02880 1626 aa28.1■■■□□ 2.09
SIK3-211ENST00000485363 BIVM-ERCC5R4GMW8 1640 aa28.1■■■□□ 2.09
SIK3-211ENST00000485363 PBRM1Q86U86 1689 aa28.1■■■□□ 2.09
SIK3-211ENST00000485363 ABCA5Q8WWZ7 1642 aa28.07■■■□□ 2.08
SIK3-211ENST00000485363 SYNJ2O15056 1496 aa28.05■■■□□ 2.08
SIK3-211ENST00000485363 SYNJ1O43426 1573 aa28.05■■■□□ 2.08
SIK3-211ENST00000485363 CLASP1Q7Z460 1538 aa27.97■■■□□ 2.07
SIK3-211ENST00000485363 CYB5RLQ6IPT4 315 aa27.94■■■□□ 2.06
SIK3-211ENST00000485363 ARAP1Q96P48 1450 aa27.89■■■□□ 2.06
SIK3-211ENST00000485363 ADAMTS12P58397 1594 aa27.84■■■□□ 2.05
SIK3-211ENST00000485363 GRIN2AQ12879 1464 aa27.81■■■□□ 2.04
SIK3-211ENST00000485363 ERICH3Q5RHP9 1530 aa27.8■■■□□ 2.04
SIK3-211ENST00000485363 FHAD1B1AJZ9 1412 aa27.78■■■□□ 2.04
SIK3-211ENST00000485363 NUP160Q12769 1436 aa27.7■■■□□ 2.03
SIK3-211ENST00000485363 CEP170Q5SW79 1584 aa27.69■■■□□ 2.02
SIK3-211ENST00000485363 KIF27Q86VH2 1401 aa27.56■■■□□ 2
SIK3-211ENST00000485363 SHROOM2Q13796 1616 aa27.56■■■□□ 2
SIK3-211ENST00000485363 TRHP20396 242 aaPredicted RBP27.55■■■□□ 2
SIK3-211ENST00000485363 ERCC6L2Q5T890 1561 aa27.54■■■□□ 2
SIK3-211ENST00000485363 IGF1RP08069 1367 aa27.49■■□□□ 1.99
SIK3-211ENST00000485363 CUL7Q14999 1698 aa27.47■■□□□ 1.99
SIK3-211ENST00000485363 RUSC2Q8N2Y8 1516 aa27.43■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms