RNA–Protein interactions for RNA: ENST00000485158.1

NUP188-206, Transcript of nucleoporin 188, humanhuman

TSL 2

Gene NUP188, Length 392 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP188-206ENST00000485158 NISCHQ9Y2I1 1504 aa34.95■■■■□ 3.19
NUP188-206ENST00000485158 ABCC9O60706 1549 aa31.61■■■□□ 2.65
NUP188-206ENST00000485158 CCDC180Q9P1Z9 1646 aa31.48■■■□□ 2.63
NUP188-206ENST00000485158 RB1CC1Q8TDY2 1594 aa30.06■■■□□ 2.4
NUP188-206ENST00000485158 DNAJC5BQ9UF47 199 aa29.94■■■□□ 2.38
NUP188-206ENST00000485158 NACADO15069 1562 aa29.83■■■□□ 2.37
NUP188-206ENST00000485158 MYO15BQ96JP2 1530 aa29.44■■■□□ 2.3
NUP188-206ENST00000485158 DCAF8L2P0C7V8 631 aa29.41■■■□□ 2.3
NUP188-206ENST00000485158 PABPN1Q86U42 306 aaKnown RBP eCLIP29.38■■■□□ 2.29
NUP188-206ENST00000485158 UNC13AQ9UPW8 1703 aa29.34■■■□□ 2.29
NUP188-206ENST00000485158 BICRAQ9NZM4 1560 aa29.22■■■□□ 2.27
NUP188-206ENST00000485158 DCAF1Q9Y4B6 1507 aa28.94■■■□□ 2.22
NUP188-206ENST00000485158 ZCCHC6Q5VYS8 1495 aaKnown RBP28.92■■■□□ 2.22
NUP188-206ENST00000485158 SHROOM4Q9ULL8 1493 aa28.89■■■□□ 2.22
NUP188-206ENST00000485158 CC2D2AQ9P2K1 1620 aa28.59■■■□□ 2.17
NUP188-206ENST00000485158 SCRIBQ14160 1630 aa28.55■■■□□ 2.16
NUP188-206ENST00000485158 CECR2Q9BXF3 1484 aa28.55■■■□□ 2.16
NUP188-206ENST00000485158 EIF4G1Q04637 1599 aaKnown RBP28.5■■■□□ 2.15
NUP188-206ENST00000485158 DNAJC5Q9H3Z4 198 aa27.72■■■□□ 2.03
NUP188-206ENST00000485158 NCAPD3P42695 1498 aa27.57■■■□□ 2
NUP188-206ENST00000485158 CUX2O14529 1486 aa27.45■■□□□ 1.99
NUP188-206ENST00000485158 ATAD2BQ9ULI0 1458 aa27.41■■□□□ 1.98
NUP188-206ENST00000485158 HMGXB3Q12766 1538 aa27.32■■□□□ 1.96
NUP188-206ENST00000485158 SMARCA2P51531 1590 aa27.31■■□□□ 1.96
NUP188-206ENST00000485158 ERCC6Q03468 1493 aa27.31■■□□□ 1.96
NUP188-206ENST00000485158 SMARCA4P51532 1647 aa27.29■■□□□ 1.96
NUP188-206ENST00000485158 BAZ1AQ9NRL2 1556 aaPredicted RBP27.14■■□□□ 1.94
NUP188-206ENST00000485158 PEG3Q9GZU2 1588 aa27.12■■□□□ 1.93
NUP188-206ENST00000485158 NESP48681 1621 aa27.11■■□□□ 1.93
NUP188-206ENST00000485158 BAZ1BQ9UIG0 1483 aaKnown RBP27.08■■□□□ 1.93
NUP188-206ENST00000485158 LAMC3Q9Y6N6 1575 aa26.95■■□□□ 1.9
NUP188-206ENST00000485158 THOC2Q8NI27 1593 aaKnown RBP26.92■■□□□ 1.9
NUP188-206ENST00000485158 MROH2BQ7Z745 1585 aa26.89■■□□□ 1.9
NUP188-206ENST00000485158 PDS5BQ9NTI5 1447 aa26.79■■□□□ 1.88
NUP188-206ENST00000485158 KIF21AQ7Z4S6 1674 aa26.73■■□□□ 1.87
NUP188-206ENST00000485158 CADPSQ9ULU8 1353 aa26.69■■□□□ 1.86
NUP188-206ENST00000485158 MRC2Q9UBG0 1479 aa26.55■■□□□ 1.84
NUP188-206ENST00000485158 WDR62O43379 1518 aa26.54■■□□□ 1.84
NUP188-206ENST00000485158 WIZO95785 1651 aa26.52■■□□□ 1.84
NUP188-206ENST00000485158 CEP164Q9UPV0 1460 aa26.38■■□□□ 1.81
NUP188-206ENST00000485158 CFTRP13569 1480 aa26.35■■□□□ 1.81
NUP188-206ENST00000485158 FANCD2Q9BXW9 1451 aa26.35■■□□□ 1.81
NUP188-206ENST00000485158 RSF1Q96T23 1441 aaPredicted RBP26.28■■□□□ 1.8
NUP188-206ENST00000485158 TRIM41Q8WV44 630 aa26.22■■□□□ 1.79
NUP188-206ENST00000485158 TOP2AP11388 1531 aaKnown RBP26.22■■□□□ 1.79
NUP188-206ENST00000485158 URB2Q14146 1524 aaKnown RBP26.15■■□□□ 1.78
NUP188-206ENST00000485158 OSCARQ8IYS5 282 aa26.12■■□□□ 1.77
NUP188-206ENST00000485158 PRDM2Q13029 1718 aa26■■□□□ 1.75
NUP188-206ENST00000485158 CCDC88BA6NC98 1476 aa25.91■■□□□ 1.74
NUP188-206ENST00000485158 IFT140Q96RY7 1462 aa25.91■■□□□ 1.74
NUP188-206ENST00000485158 ZNF608Q9ULD9 1512 aaPredicted RBP25.84■■□□□ 1.73
NUP188-206ENST00000485158 TOPBP1Q92547 1522 aa25.83■■□□□ 1.72
NUP188-206ENST00000485158 ABCC8Q09428 1581 aa25.8■■□□□ 1.72
NUP188-206ENST00000485158 RIMBP3CA6NJZ7 1639 aa25.77■■□□□ 1.72
NUP188-206ENST00000485158 RIMBP3BA6NNM3 1639 aa25.77■■□□□ 1.72
NUP188-206ENST00000485158 RIMBP3Q9UFD9 1639 aa25.77■■□□□ 1.72
NUP188-206ENST00000485158 DNMBPQ6XZF7 1577 aa25.71■■□□□ 1.71
NUP188-206ENST00000485158 ARHGEF11O15085 1522 aa25.69■■□□□ 1.7
NUP188-206ENST00000485158 EIF4G3O43432 1585 aaKnown RBP25.69■■□□□ 1.7
NUP188-206ENST00000485158 TARBP1Q13395 1621 aaKnown RBP25.63■■□□□ 1.69
NUP188-206ENST00000485158 AQRO60306 1485 aaKnown RBP eCLIP25.58■■□□□ 1.692e-7■■■■■ 37.4
NUP188-206ENST00000485158 POLA1P09884 1462 aaPredicted RBP25.54■■□□□ 1.68
NUP188-206ENST00000485158 CHD1O14646 1710 aa25.51■■□□□ 1.67
NUP188-206ENST00000485158 CYB5RLQ6IPT4 315 aa25.46■■□□□ 1.67
NUP188-206ENST00000485158 ARAP1Q96P48 1450 aa25.42■■□□□ 1.66
NUP188-206ENST00000485158 RAD54L2Q9Y4B4 1467 aa25.41■■□□□ 1.66
NUP188-206ENST00000485158 SOGA1O94964 1423 aa25.41■■□□□ 1.66
NUP188-206ENST00000485158 WDR97A6NE52 1622 aa25.41■■□□□ 1.66
NUP188-206ENST00000485158 TDRD9Q8NDG6 1382 aaKnown RBP25.37■■□□□ 1.65
NUP188-206ENST00000485158 FBLN2P98095 1184 aa25.36■■□□□ 1.65
NUP188-206ENST00000485158 FGD5Q6ZNL6 1462 aa25.33■■□□□ 1.65
NUP188-206ENST00000485158 SNAPC4Q5SXM2 1469 aa25.3■■□□□ 1.64
NUP188-206ENST00000485158 CLASP1Q7Z460 1538 aa25.3■■□□□ 1.64
NUP188-206ENST00000485158 MAGI1Q96QZ7 1491 aaPredicted RBP25.28■■□□□ 1.64
NUP188-206ENST00000485158 CUX1P39880 1505 aa25.28■■□□□ 1.64
NUP188-206ENST00000485158 GRIN2BQ13224 1484 aa25.23■■□□□ 1.63
NUP188-206ENST00000485158 SYNJ1O43426 1573 aa25.22■■□□□ 1.63
NUP188-206ENST00000485158 CHMP7Q8WUX9 453 aaPredicted RBP25.21■■□□□ 1.63
NUP188-206ENST00000485158 TRHP20396 242 aaPredicted RBP25.2■■□□□ 1.62
NUP188-206ENST00000485158 SYNJ2O15056 1496 aa25.2■■□□□ 1.62
NUP188-206ENST00000485158 GAPVD1Q14C86 1478 aa25.1■■□□□ 1.61
NUP188-206ENST00000485158 ABCA10Q8WWZ4 1543 aa25.08■■□□□ 1.61
NUP188-206ENST00000485158 PBRM1Q86U86 1689 aa25.06■■□□□ 1.6
NUP188-206ENST00000485158 ABCA5Q8WWZ7 1642 aa25.04■■□□□ 1.6
NUP188-206ENST00000485158 GRIN2AQ12879 1464 aa24.91■■□□□ 1.58
NUP188-206ENST00000485158 WRNQ14191 1432 aaPredicted RBP eCLIP24.91■■□□□ 1.58
NUP188-206ENST00000485158 NUP160Q12769 1436 aa24.88■■□□□ 1.57
NUP188-206ENST00000485158 ADAMTS12P58397 1594 aa24.85■■□□□ 1.57
NUP188-206ENST00000485158 TOP2BQ02880 1626 aa24.83■■□□□ 1.56
NUP188-206ENST00000485158 BIVM-ERCC5R4GMW8 1640 aa24.83■■□□□ 1.56
NUP188-206ENST00000485158 CEP170Q5SW79 1584 aa24.82■■□□□ 1.56
NUP188-206ENST00000485158 ERCC6L2Q5T890 1561 aa24.82■■□□□ 1.56
NUP188-206ENST00000485158 SHROOM2Q13796 1616 aa24.79■■□□□ 1.56
NUP188-206ENST00000485158 FHAD1B1AJZ9 1412 aa24.79■■□□□ 1.56
NUP188-206ENST00000485158 ERICH3Q5RHP9 1530 aa24.76■■□□□ 1.55
NUP188-206ENST00000485158 SUPT5HO00267 1087 aaKnown RBP24.76■■□□□ 1.55
NUP188-206ENST00000485158 AEBP2Q6ZN18 517 aaPredicted RBP24.64■■□□□ 1.54
NUP188-206ENST00000485158 PRG4Q92954 1404 aaPredicted RBP24.6■■□□□ 1.53
NUP188-206ENST00000485158 JPH4Q96JJ6 628 aa24.57■■□□□ 1.52
NUP188-206ENST00000485158 KIF13AQ9H1H9 1805 aa24.53■■□□□ 1.52
Retrieved 100 of 20,778 RNA–protein pairs in 227 ms