RNA–Protein interactions for RNA: ENST00000485055.5

CCDC39-205, Transcript of coiled-coil domain containing 39, humanhuman

TSL 1 (best)

Gene CCDC39, Length 2,874 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-205ENST00000485055 NISCHQ9Y2I1 1504 aa12.89□□□□□ -0.35
CCDC39-205ENST00000485055 CCDC180Q9P1Z9 1646 aa11.76□□□□□ -0.53
CCDC39-205ENST00000485055 ABCC9O60706 1549 aa11.11□□□□□ -0.63
CCDC39-205ENST00000485055 CHIC1Q5VXU3 224 aa11.11□□□□□ -0.63
CCDC39-205ENST00000485055 SLC24A1O60721 1099 aa11.1□□□□□ -0.63
CCDC39-205ENST00000485055 MYO15BQ96JP2 1530 aa11.06□□□□□ -0.64
CCDC39-205ENST00000485055 NACADO15069 1562 aa10.98□□□□□ -0.65
CCDC39-205ENST00000485055 RB1CC1Q8TDY2 1594 aa10.95□□□□□ -0.66
CCDC39-205ENST00000485055 DCAF1Q9Y4B6 1507 aa10.91□□□□□ -0.66
CCDC39-205ENST00000485055 SHROOM4Q9ULL8 1493 aa10.78□□□□□ -0.68
CCDC39-205ENST00000485055 UNC13AQ9UPW8 1703 aa10.76□□□□□ -0.69
CCDC39-205ENST00000485055 ZCCHC6Q5VYS8 1495 aaKnown RBP10.75□□□□□ -0.69
CCDC39-205ENST00000485055 EHMT2Q96KQ7 1210 aa10.66□□□□□ -0.7
CCDC39-205ENST00000485055 BICRAQ9NZM4 1560 aa10.64□□□□□ -0.71
CCDC39-205ENST00000485055 AEBP2Q6ZN18 517 aaPredicted RBP10.52□□□□□ -0.73
CCDC39-205ENST00000485055 PLPPR3Q6T4P5 718 aa10.34□□□□□ -0.75
CCDC39-205ENST00000485055 SCRIBQ14160 1630 aa10.31□□□□□ -0.76
CCDC39-205ENST00000485055 DNAJC5BQ9UF47 199 aa10.3□□□□□ -0.76
CCDC39-205ENST00000485055 EIF4G1Q04637 1599 aaKnown RBP10.3□□□□□ -0.76
CCDC39-205ENST00000485055 CC2D2AQ9P2K1 1620 aa10.26□□□□□ -0.77
CCDC39-205ENST00000485055 PABPN1Q86U42 306 aaKnown RBP eCLIP10.2□□□□□ -0.78
CCDC39-205ENST00000485055 RTN4Q9NQC3 1192 aaKnown RBP10.19□□□□□ -0.78
CCDC39-205ENST00000485055 DCAF8L2P0C7V8 631 aa10.16□□□□□ -0.78
CCDC39-205ENST00000485055 PEG3Q9GZU2 1588 aa10.14□□□□□ -0.79
CCDC39-205ENST00000485055 CECR2Q9BXF3 1484 aa10.12□□□□□ -0.79
CCDC39-205ENST00000485055 PHF23Q9BUL5 403 aaPredicted RBP10.1□□□□□ -0.79
CCDC39-205ENST00000485055 NCAPD3P42695 1498 aa10.09□□□□□ -0.79
CCDC39-205ENST00000485055 HMGXB3Q12766 1538 aa10.09□□□□□ -0.79
CCDC39-205ENST00000485055 SMARCA4P51532 1647 aa10.05□□□□□ -0.8
CCDC39-205ENST00000485055 SMARCA2P51531 1590 aa10.03□□□□□ -0.8
CCDC39-205ENST00000485055 BAZ1AQ9NRL2 1556 aaPredicted RBP10.02□□□□□ -0.81
CCDC39-205ENST00000485055 ATAD2BQ9ULI0 1458 aa9.97□□□□□ -0.81
CCDC39-205ENST00000485055 KCNA4P22459 653 aa9.91□□□□□ -0.82
CCDC39-205ENST00000485055 CSRNP3Q8WYN3 585 aa9.9□□□□□ -0.82
CCDC39-205ENST00000485055 DAXXQ9UER7 740 aaPredicted RBP9.89□□□□□ -0.83
CCDC39-205ENST00000485055 NCBP3Q53F19 620 aaKnown RBP9.87□□□□□ -0.83
CCDC39-205ENST00000485055 CUX2O14529 1486 aa9.86□□□□□ -0.83
CCDC39-205ENST00000485055 LAMC3Q9Y6N6 1575 aa9.86□□□□□ -0.83
CCDC39-205ENST00000485055 AMER1Q5JTC6 1135 aaPredicted RBP9.83□□□□□ -0.84
CCDC39-205ENST00000485055 MROH2BQ7Z745 1585 aa9.82□□□□□ -0.84
CCDC39-205ENST00000485055 BAZ1BQ9UIG0 1483 aaKnown RBP9.81□□□□□ -0.84
CCDC39-205ENST00000485055 PRDM2Q13029 1718 aa9.78□□□□□ -0.84
CCDC39-205ENST00000485055 THOC2Q8NI27 1593 aaKnown RBP9.77□□□□□ -0.85
CCDC39-205ENST00000485055 PRKCSHP14314 528 aaPredicted RBP9.76□□□□□ -0.85
CCDC39-205ENST00000485055 TOP2AP11388 1531 aaKnown RBP9.73□□□□□ -0.85
CCDC39-205ENST00000485055 WIZO95785 1651 aa9.71□□□□□ -0.86
CCDC39-205ENST00000485055 KIF21AQ7Z4S6 1674 aa9.68□□□□□ -0.86
CCDC39-205ENST00000485055 WDR62O43379 1518 aa9.67□□□□□ -0.86
CCDC39-205ENST00000485055 RSF1Q96T23 1441 aaPredicted RBP9.67□□□□□ -0.86
CCDC39-205ENST00000485055 PDS5BQ9NTI5 1447 aa9.65□□□□□ -0.86
CCDC39-205ENST00000485055 CADPSQ9ULU8 1353 aa9.65□□□□□ -0.86
CCDC39-205ENST00000485055 CFTRP13569 1480 aa9.65□□□□□ -0.86
CCDC39-205ENST00000485055 NESP48681 1621 aa9.61□□□□□ -0.87
CCDC39-205ENST00000485055 ERCC6Q03468 1493 aa9.6□□□□□ -0.87
CCDC39-205ENST00000485055 MRC2Q9UBG0 1479 aa9.6□□□□□ -0.87
CCDC39-205ENST00000485055 WDR97A6NE52 1622 aa9.54□□□□□ -0.88
CCDC39-205ENST00000485055 CEP164Q9UPV0 1460 aa9.53□□□□□ -0.88
CCDC39-205ENST00000485055 ABCC8Q09428 1581 aa9.52□□□□□ -0.88
CCDC39-205ENST00000485055 DNAJC5Q9H3Z4 198 aa9.51□□□□□ -0.89
CCDC39-205ENST00000485055 FANCD2Q9BXW9 1451 aa9.51□□□□□ -0.89
CCDC39-205ENST00000485055 CCDC88BA6NC98 1476 aa9.48□□□□□ -0.89
CCDC39-205ENST00000485055 TIMELESSQ9UNS1 1208 aa9.47□□□□□ -0.89
CCDC39-205ENST00000485055 URB2Q14146 1524 aaKnown RBP9.45□□□□□ -0.9
CCDC39-205ENST00000485055 DNMBPQ6XZF7 1577 aa9.45□□□□□ -0.9
CCDC39-205ENST00000485055 IFT140Q96RY7 1462 aa9.41□□□□□ -0.9
CCDC39-205ENST00000485055 TARBP1Q13395 1621 aaKnown RBP9.41□□□□□ -0.9
CCDC39-205ENST00000485055 SLC4A1APQ9BWU0 796 aaKnown RBP9.39□□□□□ -0.91
CCDC39-205ENST00000485055 TOPBP1Q92547 1522 aa9.38□□□□□ -0.91
CCDC39-205ENST00000485055 ARXQ96QS3 562 aa9.37□□□□□ -0.91
CCDC39-205ENST00000485055 TAOK2Q9UL54 1235 aa9.35□□□□□ -0.91
CCDC39-205ENST00000485055 TULP1O00294 542 aaPredicted RBP9.33□□□□□ -0.92
CCDC39-205ENST00000485055 BIVM-ERCC5R4GMW8 1640 aa9.31□□□□□ -0.92
CCDC39-205ENST00000485055 EIF4G3O43432 1585 aaKnown RBP9.31□□□□□ -0.92
CCDC39-205ENST00000485055 POLA1P09884 1462 aaPredicted RBP9.27□□□□□ -0.93
CCDC39-205ENST00000485055 ABCA5Q8WWZ7 1642 aa9.26□□□□□ -0.93
CCDC39-205ENST00000485055 CUX1P39880 1505 aa9.25□□□□□ -0.93
CCDC39-205ENST00000485055 TOP2BQ02880 1626 aa9.24□□□□□ -0.93
CCDC39-205ENST00000485055 TPRNQ4KMQ1 711 aa9.23□□□□□ -0.93
CCDC39-205ENST00000485055 ABCA10Q8WWZ4 1543 aa9.23□□□□□ -0.93
CCDC39-205ENST00000485055 CHD1O14646 1710 aa9.23□□□□□ -0.93
CCDC39-205ENST00000485055 PBRM1Q86U86 1689 aa9.23□□□□□ -0.93
CCDC39-205ENST00000485055 MAGI1Q96QZ7 1491 aaPredicted RBP9.23□□□□□ -0.93
CCDC39-205ENST00000485055 CLASP1Q7Z460 1538 aa9.22□□□□□ -0.93
CCDC39-205ENST00000485055 APLP2Q06481 763 aa9.22□□□□□ -0.93
CCDC39-205ENST00000485055 ZNF608Q9ULD9 1512 aaPredicted RBP9.21□□□□□ -0.94
CCDC39-205ENST00000485055 FGD5Q6ZNL6 1462 aa9.19□□□□□ -0.94
CCDC39-205ENST00000485055 BCANQ96GW7 911 aa9.19□□□□□ -0.94
CCDC39-205ENST00000485055 RIMBP3CA6NJZ7 1639 aa9.18□□□□□ -0.94
CCDC39-205ENST00000485055 RIMBP3BA6NNM3 1639 aa9.18□□□□□ -0.94
CCDC39-205ENST00000485055 RIMBP3Q9UFD9 1639 aa9.18□□□□□ -0.94
CCDC39-205ENST00000485055 ADRA2BP18089 450 aa9.17□□□□□ -0.94
CCDC39-205ENST00000485055 GRIN2BQ13224 1484 aa9.17□□□□□ -0.94
CCDC39-205ENST00000485055 SOGA1O94964 1423 aa9.16□□□□□ -0.94
CCDC39-205ENST00000485055 ERICH3Q5RHP9 1530 aa9.16□□□□□ -0.94
CCDC39-205ENST00000485055 OSCARQ8IYS5 282 aa9.15□□□□□ -0.94
CCDC39-205ENST00000485055 SHROOM2Q13796 1616 aa9.15□□□□□ -0.94
CCDC39-205ENST00000485055 SYNJ1O43426 1573 aa9.14□□□□□ -0.95
CCDC39-205ENST00000485055 SYNJ2O15056 1496 aa9.14□□□□□ -0.95
CCDC39-205ENST00000485055 ZBTB22O15209 634 aa9.14□□□□□ -0.95
CCDC39-205ENST00000485055 ADAMTS12P58397 1594 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms