RNA–Protein interactions for RNA: ENST00000484729.2

HLA-DQB1-208, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

Gene HLA-DQB1, Length 783 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-208ENST00000484729 NISCHQ9Y2I1 1504 aa38.84■■■■□ 3.81
HLA-DQB1-208ENST00000484729 ABCC9O60706 1549 aa35.62■■■■□ 3.29
HLA-DQB1-208ENST00000484729 CCDC180Q9P1Z9 1646 aa34.99■■■■□ 3.19
HLA-DQB1-208ENST00000484729 DNAJC5BQ9UF47 199 aa33.91■■■■□ 3.02
HLA-DQB1-208ENST00000484729 RB1CC1Q8TDY2 1594 aa33.59■■■□□ 2.97
HLA-DQB1-208ENST00000484729 NACADO15069 1562 aa33.22■■■□□ 2.91
HLA-DQB1-208ENST00000484729 PABPN1Q86U42 306 aaKnown RBP eCLIP33.14■■■□□ 2.9
HLA-DQB1-208ENST00000484729 DCAF8L2P0C7V8 631 aa33.13■■■□□ 2.89
HLA-DQB1-208ENST00000484729 UNC13AQ9UPW8 1703 aa32.85■■■□□ 2.85
HLA-DQB1-208ENST00000484729 BICRAQ9NZM4 1560 aa32.68■■■□□ 2.82
HLA-DQB1-208ENST00000484729 MYO15BQ96JP2 1530 aa32.56■■■□□ 2.8
HLA-DQB1-208ENST00000484729 CC2D2AQ9P2K1 1620 aa32.1■■■□□ 2.73
HLA-DQB1-208ENST00000484729 CECR2Q9BXF3 1484 aa32.1■■■□□ 2.73
HLA-DQB1-208ENST00000484729 ZCCHC6Q5VYS8 1495 aaKnown RBP32.07■■■□□ 2.72
HLA-DQB1-208ENST00000484729 SHROOM4Q9ULL8 1493 aa32.05■■■□□ 2.72
HLA-DQB1-208ENST00000484729 DCAF1Q9Y4B6 1507 aa31.98■■■□□ 2.71
HLA-DQB1-208ENST00000484729 SCRIBQ14160 1630 aa31.97■■■□□ 2.71
HLA-DQB1-208ENST00000484729 EIF4G1Q04637 1599 aaKnown RBP31.9■■■□□ 2.7
HLA-DQB1-208ENST00000484729 DNAJC5Q9H3Z4 198 aa31.42■■■□□ 2.62
HLA-DQB1-208ENST00000484729 CUX2O14529 1486 aa30.8■■■□□ 2.52
HLA-DQB1-208ENST00000484729 ERCC6Q03468 1493 aa30.75■■■□□ 2.51
HLA-DQB1-208ENST00000484729 NCAPD3P42695 1498 aa30.7■■■□□ 2.51
HLA-DQB1-208ENST00000484729 ATAD2BQ9ULI0 1458 aa30.57■■■□□ 2.48
HLA-DQB1-208ENST00000484729 NESP48681 1621 aa30.47■■■□□ 2.47
HLA-DQB1-208ENST00000484729 SMARCA2P51531 1590 aa30.41■■■□□ 2.46
HLA-DQB1-208ENST00000484729 HMGXB3Q12766 1538 aa30.4■■■□□ 2.46
HLA-DQB1-208ENST00000484729 SMARCA4P51532 1647 aa30.4■■■□□ 2.46
HLA-DQB1-208ENST00000484729 BAZ1BQ9UIG0 1483 aaKnown RBP30.25■■■□□ 2.43
HLA-DQB1-208ENST00000484729 THOC2Q8NI27 1593 aaKnown RBP30.18■■■□□ 2.42
HLA-DQB1-208ENST00000484729 BAZ1AQ9NRL2 1556 aaPredicted RBP30.15■■■□□ 2.42
HLA-DQB1-208ENST00000484729 PEG3Q9GZU2 1588 aa30.07■■■□□ 2.4
HLA-DQB1-208ENST00000484729 LAMC3Q9Y6N6 1575 aa30.07■■■□□ 2.4
HLA-DQB1-208ENST00000484729 KIF21AQ7Z4S6 1674 aa30■■■□□ 2.39
HLA-DQB1-208ENST00000484729 MROH2BQ7Z745 1585 aa29.97■■■□□ 2.39
HLA-DQB1-208ENST00000484729 PDS5BQ9NTI5 1447 aa29.94■■■□□ 2.38
HLA-DQB1-208ENST00000484729 TRIM41Q8WV44 630 aa29.91■■■□□ 2.38
HLA-DQB1-208ENST00000484729 CADPSQ9ULU8 1353 aa29.77■■■□□ 2.36
HLA-DQB1-208ENST00000484729 MRC2Q9UBG0 1479 aa29.72■■■□□ 2.35
HLA-DQB1-208ENST00000484729 WDR62O43379 1518 aa29.65■■■□□ 2.34
HLA-DQB1-208ENST00000484729 WIZO95785 1651 aa29.59■■■□□ 2.33
HLA-DQB1-208ENST00000484729 CEP164Q9UPV0 1460 aa29.5■■■□□ 2.31
HLA-DQB1-208ENST00000484729 FANCD2Q9BXW9 1451 aa29.45■■■□□ 2.31
HLA-DQB1-208ENST00000484729 OSCARQ8IYS5 282 aa29.38■■■□□ 2.29
HLA-DQB1-208ENST00000484729 CFTRP13569 1480 aa29.31■■■□□ 2.28
HLA-DQB1-208ENST00000484729 URB2Q14146 1524 aaKnown RBP29.25■■■□□ 2.27
HLA-DQB1-208ENST00000484729 RSF1Q96T23 1441 aaPredicted RBP29.16■■■□□ 2.26
HLA-DQB1-208ENST00000484729 TOP2AP11388 1531 aaKnown RBP29.13■■■□□ 2.25
HLA-DQB1-208ENST00000484729 RIMBP3CA6NJZ7 1639 aa29.04■■■□□ 2.24
HLA-DQB1-208ENST00000484729 RIMBP3BA6NNM3 1639 aa29.04■■■□□ 2.24
HLA-DQB1-208ENST00000484729 RIMBP3Q9UFD9 1639 aa29.04■■■□□ 2.24
HLA-DQB1-208ENST00000484729 ZNF608Q9ULD9 1512 aaPredicted RBP28.99■■■□□ 2.23
HLA-DQB1-208ENST00000484729 IFT140Q96RY7 1462 aa28.92■■■□□ 2.22
HLA-DQB1-208ENST00000484729 PRDM2Q13029 1718 aa28.91■■■□□ 2.22
HLA-DQB1-208ENST00000484729 ARHGEF11O15085 1522 aa28.89■■■□□ 2.22
HLA-DQB1-208ENST00000484729 CCDC88BA6NC98 1476 aa28.85■■■□□ 2.21
HLA-DQB1-208ENST00000484729 TOPBP1Q92547 1522 aa28.84■■■□□ 2.21
HLA-DQB1-208ENST00000484729 CYB5RLQ6IPT4 315 aa28.78■■■□□ 2.2
HLA-DQB1-208ENST00000484729 EIF4G3O43432 1585 aaKnown RBP28.75■■■□□ 2.19
HLA-DQB1-208ENST00000484729 AQRO60306 1485 aaKnown RBP eCLIP28.68■■■□□ 2.18
HLA-DQB1-208ENST00000484729 ABCC8Q09428 1581 aa28.67■■■□□ 2.18
HLA-DQB1-208ENST00000484729 DNMBPQ6XZF7 1577 aa28.66■■■□□ 2.18
HLA-DQB1-208ENST00000484729 CHD1O14646 1710 aa28.64■■■□□ 2.18
HLA-DQB1-208ENST00000484729 TRHP20396 242 aaPredicted RBP28.62■■■□□ 2.17
HLA-DQB1-208ENST00000484729 FBLN2P98095 1184 aa28.62■■■□□ 2.17
HLA-DQB1-208ENST00000484729 TARBP1Q13395 1621 aaKnown RBP28.6■■■□□ 2.17
HLA-DQB1-208ENST00000484729 ARAP1Q96P48 1450 aa28.59■■■□□ 2.17
HLA-DQB1-208ENST00000484729 POLA1P09884 1462 aaPredicted RBP28.51■■■□□ 2.15
HLA-DQB1-208ENST00000484729 RAD54L2Q9Y4B4 1467 aa28.46■■■□□ 2.15
HLA-DQB1-208ENST00000484729 TDRD9Q8NDG6 1382 aaKnown RBP28.44■■■□□ 2.14
HLA-DQB1-208ENST00000484729 SOGA1O94964 1423 aa28.39■■■□□ 2.14
HLA-DQB1-208ENST00000484729 SNAPC4Q5SXM2 1469 aa28.34■■■□□ 2.13
HLA-DQB1-208ENST00000484729 CLASP1Q7Z460 1538 aa28.29■■■□□ 2.12
HLA-DQB1-208ENST00000484729 CHMP7Q8WUX9 453 aaPredicted RBP28.28■■■□□ 2.12
HLA-DQB1-208ENST00000484729 FGD5Q6ZNL6 1462 aa28.27■■■□□ 2.12
HLA-DQB1-208ENST00000484729 SYNJ1O43426 1573 aa28.21■■■□□ 2.11
HLA-DQB1-208ENST00000484729 MAGI1Q96QZ7 1491 aaPredicted RBP28.19■■■□□ 2.1
HLA-DQB1-208ENST00000484729 WDR97A6NE52 1622 aa28.18■■■□□ 2.1
HLA-DQB1-208ENST00000484729 CUX1P39880 1505 aa28.18■■■□□ 2.1
HLA-DQB1-208ENST00000484729 GRIN2BQ13224 1484 aa28.16■■■□□ 2.1
HLA-DQB1-208ENST00000484729 AEBP2Q6ZN18 517 aaPredicted RBP28.12■■■□□ 2.09
HLA-DQB1-208ENST00000484729 SYNJ2O15056 1496 aa28.12■■■□□ 2.09
HLA-DQB1-208ENST00000484729 GAPVD1Q14C86 1478 aa28.04■■■□□ 2.08
HLA-DQB1-208ENST00000484729 PBRM1Q86U86 1689 aa28■■■□□ 2.07
HLA-DQB1-208ENST00000484729 ERCC6L2Q5T890 1561 aa27.89■■■□□ 2.05
HLA-DQB1-208ENST00000484729 ABCA5Q8WWZ7 1642 aa27.89■■■□□ 2.05
HLA-DQB1-208ENST00000484729 ABCA10Q8WWZ4 1543 aa27.88■■■□□ 2.05
HLA-DQB1-208ENST00000484729 GRIN2AQ12879 1464 aa27.81■■■□□ 2.04
HLA-DQB1-208ENST00000484729 CEP170Q5SW79 1584 aa27.75■■■□□ 2.03
HLA-DQB1-208ENST00000484729 NUP160Q12769 1436 aa27.72■■■□□ 2.03
HLA-DQB1-208ENST00000484729 ADAMTS12P58397 1594 aa27.72■■■□□ 2.03
HLA-DQB1-208ENST00000484729 WRNQ14191 1432 aaPredicted RBP eCLIP27.69■■■□□ 2.02
HLA-DQB1-208ENST00000484729 SHROOM2Q13796 1616 aa27.64■■■□□ 2.02
HLA-DQB1-208ENST00000484729 SUPT5HO00267 1087 aaKnown RBP27.63■■■□□ 2.01
HLA-DQB1-208ENST00000484729 FHAD1B1AJZ9 1412 aa27.63■■■□□ 2.01
HLA-DQB1-208ENST00000484729 KIF13AQ9H1H9 1805 aa27.55■■■□□ 2
HLA-DQB1-208ENST00000484729 TOP2BQ02880 1626 aa27.54■■■□□ 2
HLA-DQB1-208ENST00000484729 PRG4Q92954 1404 aaPredicted RBP27.54■■■□□ 2
HLA-DQB1-208ENST00000484729 BIVM-ERCC5R4GMW8 1640 aa27.54■■■□□ 2
HLA-DQB1-208ENST00000484729 ERICH3Q5RHP9 1530 aa27.51■■□□□ 1.99
HLA-DQB1-208ENST00000484729 JPH4Q96JJ6 628 aa27.48■■□□□ 1.99
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms