RNA–Protein interactions for RNA: ENST00000484620.1

PDLIM4-207, Transcript of PDZ and LIM domain 4, humanhuman

TSL 5

Gene PDLIM4, Length 456 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4-207ENST00000484620 NISCHQ9Y2I1 1504 aa45.01■■■■■ 4.8
PDLIM4-207ENST00000484620 CCDC180Q9P1Z9 1646 aa39.79■■■■□ 3.96
PDLIM4-207ENST00000484620 ABCC9O60706 1549 aa38.27■■■■□ 3.72
PDLIM4-207ENST00000484620 ZCCHC6Q5VYS8 1495 aaKnown RBP37.63■■■■□ 3.61
PDLIM4-207ENST00000484620 DCAF8L2P0C7V8 631 aa37.35■■■■□ 3.57
PDLIM4-207ENST00000484620 DCAF1Q9Y4B6 1507 aa37.29■■■■□ 3.56
PDLIM4-207ENST00000484620 NACADO15069 1562 aa37.24■■■■□ 3.55
PDLIM4-207ENST00000484620 MYO15BQ96JP2 1530 aa37.21■■■■□ 3.55
PDLIM4-207ENST00000484620 RB1CC1Q8TDY2 1594 aa37.13■■■■□ 3.53
PDLIM4-207ENST00000484620 SCRIBQ14160 1630 aa36.32■■■■□ 3.4
PDLIM4-207ENST00000484620 UNC13AQ9UPW8 1703 aa36.28■■■■□ 3.4
PDLIM4-207ENST00000484620 BICRAQ9NZM4 1560 aa35.93■■■■□ 3.34
PDLIM4-207ENST00000484620 SHROOM4Q9ULL8 1493 aa35.92■■■■□ 3.34
PDLIM4-207ENST00000484620 PABPN1Q86U42 306 aaKnown RBP eCLIP35.84■■■■□ 3.33
PDLIM4-207ENST00000484620 EIF4G1Q04637 1599 aaKnown RBP34.96■■■■□ 3.19
PDLIM4-207ENST00000484620 CECR2Q9BXF3 1484 aa34.95■■■■□ 3.19
PDLIM4-207ENST00000484620 BAZ1AQ9NRL2 1556 aaPredicted RBP34.87■■■■□ 3.17
PDLIM4-207ENST00000484620 SMARCA4P51532 1647 aa34.81■■■■□ 3.16
PDLIM4-207ENST00000484620 MROH2BQ7Z745 1585 aa34.67■■■■□ 3.14
PDLIM4-207ENST00000484620 CC2D2AQ9P2K1 1620 aa34.66■■■■□ 3.14
PDLIM4-207ENST00000484620 RSF1Q96T23 1441 aaPredicted RBP34.5■■■■□ 3.11
PDLIM4-207ENST00000484620 SMARCA2P51531 1590 aa34.47■■■■□ 3.11
PDLIM4-207ENST00000484620 DNAJC5BQ9UF47 199 aa34.46■■■■□ 3.11
PDLIM4-207ENST00000484620 PEG3Q9GZU2 1588 aa34.45■■■■□ 3.1
PDLIM4-207ENST00000484620 ATAD2BQ9ULI0 1458 aa34.43■■■■□ 3.1
PDLIM4-207ENST00000484620 WIZO95785 1651 aa34.35■■■■□ 3.09
PDLIM4-207ENST00000484620 NCAPD3P42695 1498 aa34.32■■■■□ 3.08
PDLIM4-207ENST00000484620 HMGXB3Q12766 1538 aa34.25■■■■□ 3.07
PDLIM4-207ENST00000484620 BAZ1BQ9UIG0 1483 aaKnown RBP34.22■■■■□ 3.07
PDLIM4-207ENST00000484620 SUPT5HO00267 1087 aaKnown RBP34.13■■■■□ 3.05
PDLIM4-207ENST00000484620 TOP2AP11388 1531 aaKnown RBP34.05■■■■□ 3.04
PDLIM4-207ENST00000484620 CCDC88BA6NC98 1476 aa33.62■■■□□ 2.97
PDLIM4-207ENST00000484620 CADPSQ9ULU8 1353 aa33.35■■■□□ 2.93
PDLIM4-207ENST00000484620 LAMC3Q9Y6N6 1575 aa33.35■■■□□ 2.93
PDLIM4-207ENST00000484620 CFTRP13569 1480 aa33.29■■■□□ 2.92
PDLIM4-207ENST00000484620 NESP48681 1621 aa33.28■■■□□ 2.92
PDLIM4-207ENST00000484620 PRDM2Q13029 1718 aa33.16■■■□□ 2.9
PDLIM4-207ENST00000484620 PDS5BQ9NTI5 1447 aa33.11■■■□□ 2.89
PDLIM4-207ENST00000484620 FANCD2Q9BXW9 1451 aa32.99■■■□□ 2.87
PDLIM4-207ENST00000484620 ERCC6Q03468 1493 aa32.98■■■□□ 2.87
PDLIM4-207ENST00000484620 KIF21AQ7Z4S6 1674 aa32.95■■■□□ 2.87
PDLIM4-207ENST00000484620 CEP164Q9UPV0 1460 aa32.91■■■□□ 2.86
PDLIM4-207ENST00000484620 MRC2Q9UBG0 1479 aa32.72■■■□□ 2.83
PDLIM4-207ENST00000484620 THOC2Q8NI27 1593 aaKnown RBP32.68■■■□□ 2.82
PDLIM4-207ENST00000484620 ABCC8Q09428 1581 aa32.6■■■□□ 2.81
PDLIM4-207ENST00000484620 URB2Q14146 1524 aaKnown RBP32.6■■■□□ 2.81
PDLIM4-207ENST00000484620 WDR62O43379 1518 aa32.58■■■□□ 2.81
PDLIM4-207ENST00000484620 DNMBPQ6XZF7 1577 aa32.57■■■□□ 2.8
PDLIM4-207ENST00000484620 WRNQ14191 1432 aaPredicted RBP eCLIP32.55■■■□□ 2.8
PDLIM4-207ENST00000484620 TOPBP1Q92547 1522 aa32.53■■■□□ 2.8
PDLIM4-207ENST00000484620 CUX1P39880 1505 aa32.51■■■□□ 2.79
PDLIM4-207ENST00000484620 SYNJ1O43426 1573 aa32.42■■■□□ 2.78
PDLIM4-207ENST00000484620 TOP2BQ02880 1626 aa32.42■■■□□ 2.78
PDLIM4-207ENST00000484620 BIVM-ERCC5R4GMW8 1640 aa32.42■■■□□ 2.78
PDLIM4-207ENST00000484620 CUX2O14529 1486 aa32.39■■■□□ 2.78
PDLIM4-207ENST00000484620 FGD5Q6ZNL6 1462 aa32.31■■■□□ 2.76
PDLIM4-207ENST00000484620 POLA1P09884 1462 aaPredicted RBP32.29■■■□□ 2.76
PDLIM4-207ENST00000484620 TRIM41Q8WV44 630 aa32.23■■■□□ 2.75
PDLIM4-207ENST00000484620 CHIC1Q5VXU3 224 aa32.2■■■□□ 2.75
PDLIM4-207ENST00000484620 IFT140Q96RY7 1462 aa32.18■■■□□ 2.74
PDLIM4-207ENST00000484620 SOGA1O94964 1423 aa32.17■■■□□ 2.74
PDLIM4-207ENST00000484620 RAD54L2Q9Y4B4 1467 aa32.12■■■□□ 2.73
PDLIM4-207ENST00000484620 TARBP1Q13395 1621 aaKnown RBP32.11■■■□□ 2.73
PDLIM4-207ENST00000484620 ABCA10Q8WWZ4 1543 aa32.03■■■□□ 2.72
PDLIM4-207ENST00000484620 WDR97A6NE52 1622 aa32.03■■■□□ 2.72
PDLIM4-207ENST00000484620 ZNF608Q9ULD9 1512 aaPredicted RBP31.94■■■□□ 2.7
PDLIM4-207ENST00000484620 TDRD9Q8NDG6 1382 aaKnown RBP31.89■■■□□ 2.7
PDLIM4-207ENST00000484620 EIF4G3O43432 1585 aaKnown RBP31.89■■■□□ 2.7
PDLIM4-207ENST00000484620 ABCA5Q8WWZ7 1642 aa31.86■■■□□ 2.69
PDLIM4-207ENST00000484620 AQRO60306 1485 aaKnown RBP eCLIP31.84■■■□□ 2.69
PDLIM4-207ENST00000484620 KIF27Q86VH2 1401 aa31.84■■■□□ 2.69
PDLIM4-207ENST00000484620 GAPVD1Q14C86 1478 aa31.82■■■□□ 2.68
PDLIM4-207ENST00000484620 PBRM1Q86U86 1689 aa31.75■■■□□ 2.67
PDLIM4-207ENST00000484620 GRIN2BQ13224 1484 aa31.74■■■□□ 2.67
PDLIM4-207ENST00000484620 ERICH3Q5RHP9 1530 aa31.68■■■□□ 2.66
PDLIM4-207ENST00000484620 RUSC2Q8N2Y8 1516 aa31.68■■■□□ 2.66
PDLIM4-207ENST00000484620 EEA1Q15075 1411 aa31.67■■■□□ 2.66
PDLIM4-207ENST00000484620 SNAPC4Q5SXM2 1469 aa31.59■■■□□ 2.65
PDLIM4-207ENST00000484620 MAGI1Q96QZ7 1491 aaPredicted RBP31.59■■■□□ 2.65
PDLIM4-207ENST00000484620 IGF1RP08069 1367 aa31.57■■■□□ 2.64
PDLIM4-207ENST00000484620 CUL7Q14999 1698 aa31.54■■■□□ 2.64
PDLIM4-207ENST00000484620 FAM9AQ8IZU1 332 aaPredicted RBP31.52■■■□□ 2.64
PDLIM4-207ENST00000484620 ADAMTS12P58397 1594 aa31.51■■■□□ 2.64
PDLIM4-207ENST00000484620 CSRNP3Q8WYN3 585 aa31.49■■■□□ 2.63
PDLIM4-207ENST00000484620 FHAD1B1AJZ9 1412 aa31.48■■■□□ 2.63
PDLIM4-207ENST00000484620 SYNJ2O15056 1496 aa31.46■■■□□ 2.63
PDLIM4-207ENST00000484620 CARMIL1Q5VZK9 1371 aa31.43■■■□□ 2.62
PDLIM4-207ENST00000484620 CHMP7Q8WUX9 453 aaPredicted RBP31.39■■■□□ 2.62
PDLIM4-207ENST00000484620 CHD1O14646 1710 aa31.38■■■□□ 2.61
PDLIM4-207ENST00000484620 FBLN2P98095 1184 aa31.37■■■□□ 2.61
PDLIM4-207ENST00000484620 PRXQ9BXM0 1461 aa31.35■■■□□ 2.61
PDLIM4-207ENST00000484620 RAPGEF2Q9Y4G8 1499 aa31.33■■■□□ 2.61
PDLIM4-207ENST00000484620 GRIN2AQ12879 1464 aa31.33■■■□□ 2.61
PDLIM4-207ENST00000484620 KIF21BO75037 1637 aa31.29■■■□□ 2.6
PDLIM4-207ENST00000484620 GOLGA3Q08378 1498 aa31.15■■■□□ 2.58
PDLIM4-207ENST00000484620 OSCARQ8IYS5 282 aa31.15■■■□□ 2.58
PDLIM4-207ENST00000484620 NUP160Q12769 1436 aa31.15■■■□□ 2.58
PDLIM4-207ENST00000484620 CEP170Q5SW79 1584 aa31.13■■■□□ 2.57
PDLIM4-207ENST00000484620 EHMT2Q96KQ7 1210 aa31.05■■■□□ 2.56
PDLIM4-207ENST00000484620 CTTNBP2Q8WZ74 1663 aa31.04■■■□□ 2.56
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms