RNA–Protein interactions for RNA: ENST00000484556.1

DDR1-245, Transcript of discoidin domain receptor tyrosine kinase 1, humanhuman

TSL 2

Gene DDR1, Length 1,038 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDR1-245ENST00000484556 NISCHQ9Y2I1 1504 aa46.57■■■■■ 5.05
DDR1-245ENST00000484556 ABCC9O60706 1549 aa43.3■■■■■ 4.52
DDR1-245ENST00000484556 CCDC180Q9P1Z9 1646 aa42.26■■■■■ 4.36
DDR1-245ENST00000484556 DNAJC5BQ9UF47 199 aa41.47■■■■■ 4.23
DDR1-245ENST00000484556 RB1CC1Q8TDY2 1594 aa40.69■■■■■ 4.11
DDR1-245ENST00000484556 NACADO15069 1562 aa40.14■■■■■ 4.02
DDR1-245ENST00000484556 PABPN1Q86U42 306 aaKnown RBP eCLIP40.13■■■■■ 4.01
DDR1-245ENST00000484556 UNC13AQ9UPW8 1703 aa39.91■■■■□ 3.98
DDR1-245ENST00000484556 DCAF8L2P0C7V8 631 aa39.78■■■■□ 3.96
DDR1-245ENST00000484556 BICRAQ9NZM4 1560 aa39.61■■■■□ 3.93
DDR1-245ENST00000484556 MYO15BQ96JP2 1530 aa39.18■■■■□ 3.86
DDR1-245ENST00000484556 CECR2Q9BXF3 1484 aa39.06■■■■□ 3.84
DDR1-245ENST00000484556 CC2D2AQ9P2K1 1620 aa39.05■■■■□ 3.84
DDR1-245ENST00000484556 SHROOM4Q9ULL8 1493 aa38.82■■■■□ 3.81
DDR1-245ENST00000484556 DNAJC5Q9H3Z4 198 aa38.74■■■■□ 3.79
DDR1-245ENST00000484556 EIF4G1Q04637 1599 aaKnown RBP38.7■■■■□ 3.79
DDR1-245ENST00000484556 SCRIBQ14160 1630 aa38.53■■■■□ 3.76
DDR1-245ENST00000484556 ZCCHC6Q5VYS8 1495 aaKnown RBP38.4■■■■□ 3.74
DDR1-245ENST00000484556 DCAF1Q9Y4B6 1507 aa38.33■■■■□ 3.73
DDR1-245ENST00000484556 CUX2O14529 1486 aa37.64■■■■□ 3.62
DDR1-245ENST00000484556 ERCC6Q03468 1493 aa37.42■■■■□ 3.58
DDR1-245ENST00000484556 NCAPD3P42695 1498 aa37.04■■■■□ 3.52
DDR1-245ENST00000484556 NESP48681 1621 aa36.92■■■■□ 3.5
DDR1-245ENST00000484556 ATAD2BQ9ULI0 1458 aa36.84■■■■□ 3.49
DDR1-245ENST00000484556 THOC2Q8NI27 1593 aaKnown RBP36.75■■■■□ 3.47
DDR1-245ENST00000484556 TRIM41Q8WV44 630 aa36.75■■■■□ 3.47
DDR1-245ENST00000484556 HMGXB3Q12766 1538 aa36.72■■■■□ 3.47
DDR1-245ENST00000484556 SMARCA2P51531 1590 aa36.66■■■■□ 3.46
DDR1-245ENST00000484556 SMARCA4P51532 1647 aa36.6■■■■□ 3.45
DDR1-245ENST00000484556 KIF21AQ7Z4S6 1674 aa36.45■■■■□ 3.43
DDR1-245ENST00000484556 BAZ1BQ9UIG0 1483 aaKnown RBP36.45■■■■□ 3.43
DDR1-245ENST00000484556 LAMC3Q9Y6N6 1575 aa36.42■■■■□ 3.42
DDR1-245ENST00000484556 BAZ1AQ9NRL2 1556 aaPredicted RBP36.21■■■■□ 3.39
DDR1-245ENST00000484556 PDS5BQ9NTI5 1447 aa36.19■■■■□ 3.38
DDR1-245ENST00000484556 PEG3Q9GZU2 1588 aa36.18■■■■□ 3.38
DDR1-245ENST00000484556 MRC2Q9UBG0 1479 aa36.01■■■■□ 3.36
DDR1-245ENST00000484556 WDR62O43379 1518 aa35.97■■■■□ 3.35
DDR1-245ENST00000484556 MROH2BQ7Z745 1585 aa35.93■■■■□ 3.34
DDR1-245ENST00000484556 CADPSQ9ULU8 1353 aa35.88■■■■□ 3.33
DDR1-245ENST00000484556 OSCARQ8IYS5 282 aa35.71■■■■□ 3.31
DDR1-245ENST00000484556 CEP164Q9UPV0 1460 aa35.67■■■■□ 3.3
DDR1-245ENST00000484556 FANCD2Q9BXW9 1451 aa35.53■■■■□ 3.28
DDR1-245ENST00000484556 RIMBP3CA6NJZ7 1639 aa35.5■■■■□ 3.27
DDR1-245ENST00000484556 RIMBP3BA6NNM3 1639 aa35.5■■■■□ 3.27
DDR1-245ENST00000484556 RIMBP3Q9UFD9 1639 aa35.5■■■■□ 3.27
DDR1-245ENST00000484556 WIZO95785 1651 aa35.49■■■■□ 3.27
DDR1-245ENST00000484556 URB2Q14146 1524 aaKnown RBP35.33■■■■□ 3.25
DDR1-245ENST00000484556 CFTRP13569 1480 aa35.28■■■■□ 3.24
DDR1-245ENST00000484556 ARHGEF11O15085 1522 aa35.25■■■■□ 3.23
DDR1-245ENST00000484556 ZNF608Q9ULD9 1512 aaPredicted RBP35.08■■■■□ 3.21
DDR1-245ENST00000484556 CYB5RLQ6IPT4 315 aa35.01■■■■□ 3.2
DDR1-245ENST00000484556 TRHP20396 242 aaPredicted RBP34.97■■■■□ 3.19
DDR1-245ENST00000484556 IFT140Q96RY7 1462 aa34.96■■■■□ 3.19
DDR1-245ENST00000484556 PRDM2Q13029 1718 aa34.94■■■■□ 3.18
DDR1-245ENST00000484556 TOP2AP11388 1531 aaKnown RBP34.91■■■■□ 3.18
DDR1-245ENST00000484556 EIF4G3O43432 1585 aaKnown RBP34.87■■■■□ 3.17
DDR1-245ENST00000484556 ARAP1Q96P48 1450 aa34.84■■■■□ 3.17
DDR1-245ENST00000484556 CHD1O14646 1710 aa34.83■■■■□ 3.17
DDR1-245ENST00000484556 RSF1Q96T23 1441 aaPredicted RBP34.76■■■■□ 3.16
DDR1-245ENST00000484556 TOPBP1Q92547 1522 aa34.76■■■■□ 3.15
DDR1-245ENST00000484556 AEBP2Q6ZN18 517 aaPredicted RBP34.67■■■■□ 3.14
DDR1-245ENST00000484556 AQRO60306 1485 aaKnown RBP eCLIP34.61■■■■□ 3.135e-8■■■■■ 51
DDR1-245ENST00000484556 FBLN2P98095 1184 aa34.57■■■■□ 3.12
DDR1-245ENST00000484556 TARBP1Q13395 1621 aaKnown RBP34.55■■■■□ 3.12
DDR1-245ENST00000484556 DNMBPQ6XZF7 1577 aa34.54■■■■□ 3.12
DDR1-245ENST00000484556 CCDC88BA6NC98 1476 aa34.51■■■■□ 3.11
DDR1-245ENST00000484556 ABCC8Q09428 1581 aa34.5■■■■□ 3.11
DDR1-245ENST00000484556 POLA1P09884 1462 aaPredicted RBP34.34■■■■□ 3.09
DDR1-245ENST00000484556 CLASP1Q7Z460 1538 aa34.33■■■■□ 3.09
DDR1-245ENST00000484556 RAD54L2Q9Y4B4 1467 aa34.27■■■■□ 3.08
DDR1-245ENST00000484556 SNAPC4Q5SXM2 1469 aa34.25■■■■□ 3.07
DDR1-245ENST00000484556 TDRD9Q8NDG6 1382 aaKnown RBP34.23■■■■□ 3.07
DDR1-245ENST00000484556 SYNJ1O43426 1573 aa34.19■■■■□ 3.06
DDR1-245ENST00000484556 SOGA1O94964 1423 aa34.12■■■■□ 3.05
DDR1-245ENST00000484556 CHMP7Q8WUX9 453 aaPredicted RBP34.1■■■■□ 3.05
DDR1-245ENST00000484556 MAGI1Q96QZ7 1491 aaPredicted RBP34.04■■■■□ 3.04
DDR1-245ENST00000484556 WDR97A6NE52 1622 aa34.04■■■■□ 3.04
DDR1-245ENST00000484556 GAPVD1Q14C86 1478 aa34.01■■■■□ 3.04
DDR1-245ENST00000484556 FGD5Q6ZNL6 1462 aa34■■■■□ 3.03
DDR1-245ENST00000484556 SYNJ2O15056 1496 aa33.96■■■■□ 3.03
DDR1-245ENST00000484556 GRIN2BQ13224 1484 aa33.95■■■■□ 3.02
DDR1-245ENST00000484556 PBRM1Q86U86 1689 aa33.86■■■■□ 3.01
DDR1-245ENST00000484556 CUX1P39880 1505 aa33.82■■■■□ 3
DDR1-245ENST00000484556 ERCC6L2Q5T890 1561 aa33.79■■■■□ 3
DDR1-245ENST00000484556 KIF13AQ9H1H9 1805 aa33.63■■■□□ 2.97
DDR1-245ENST00000484556 ABCA5Q8WWZ7 1642 aa33.61■■■□□ 2.97
DDR1-245ENST00000484556 CEP170Q5SW79 1584 aa33.59■■■□□ 2.97
DDR1-245ENST00000484556 GRIN2AQ12879 1464 aa33.54■■■□□ 2.96
DDR1-245ENST00000484556 ABCA10Q8WWZ4 1543 aa33.49■■■□□ 2.95
DDR1-245ENST00000484556 ADAMTS12P58397 1594 aa33.44■■■□□ 2.94
DDR1-245ENST00000484556 SHROOM2Q13796 1616 aa33.44■■■□□ 2.94
DDR1-245ENST00000484556 NUP160Q12769 1436 aa33.44■■■□□ 2.94
DDR1-245ENST00000484556 ILDR1Q86SU0 546 aaPredicted RBP33.3■■■□□ 2.92
DDR1-245ENST00000484556 KDM4FA0A1W2PPD8 638 aa33.24■■■□□ 2.91
DDR1-245ENST00000484556 FAM69CQ0P6D2 419 aa33.24■■■□□ 2.91
DDR1-245ENST00000484556 ABCC10Q5T3U5 1492 aa33.23■■■□□ 2.91
DDR1-245ENST00000484556 FHAD1B1AJZ9 1412 aa33.21■■■□□ 2.91
DDR1-245ENST00000484556 PRG4Q92954 1404 aaPredicted RBP33.21■■■□□ 2.91
DDR1-245ENST00000484556 DIP2BQ9P265 1576 aa33.18■■■□□ 2.9
DDR1-245ENST00000484556 KDM6BO15054 1643 aa33.17■■■□□ 2.9
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms