RNA–Protein interactions for RNA: ENST00000484404.1

ITGA4-210, Transcript of integrin subunit alpha 4, humanhuman

TSL 3

Gene ITGA4, Length 592 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGA4-210ENST00000484404 NISCHQ9Y2I1 1504 aa34.09■■■■□ 3.05
ITGA4-210ENST00000484404 CCDC180Q9P1Z9 1646 aa30.55■■■□□ 2.48
ITGA4-210ENST00000484404 ABCC9O60706 1549 aa30.27■■■□□ 2.44
ITGA4-210ENST00000484404 RB1CC1Q8TDY2 1594 aa28.89■■■□□ 2.22
ITGA4-210ENST00000484404 NACADO15069 1562 aa28.7■■■□□ 2.18
ITGA4-210ENST00000484404 DCAF8L2P0C7V8 631 aa28.68■■■□□ 2.18
ITGA4-210ENST00000484404 UNC13AQ9UPW8 1703 aa28.48■■■□□ 2.15
ITGA4-210ENST00000484404 ZCCHC6Q5VYS8 1495 aaKnown RBP28.33■■■□□ 2.13
ITGA4-210ENST00000484404 MYO15BQ96JP2 1530 aa28.29■■■□□ 2.12
ITGA4-210ENST00000484404 PABPN1Q86U42 306 aaKnown RBP eCLIP28.17■■■□□ 2.1
ITGA4-210ENST00000484404 DCAF1Q9Y4B6 1507 aa28.08■■■□□ 2.09
ITGA4-210ENST00000484404 BICRAQ9NZM4 1560 aa28.08■■■□□ 2.09
ITGA4-210ENST00000484404 DNAJC5BQ9UF47 199 aa28.03■■■□□ 2.08
ITGA4-210ENST00000484404 SCRIBQ14160 1630 aa27.96■■■□□ 2.07
ITGA4-210ENST00000484404 SHROOM4Q9ULL8 1493 aa27.55■■■□□ 2
ITGA4-210ENST00000484404 CC2D2AQ9P2K1 1620 aa27.38■■□□□ 1.97
ITGA4-210ENST00000484404 EIF4G1Q04637 1599 aaKnown RBP27.35■■□□□ 1.97
ITGA4-210ENST00000484404 CECR2Q9BXF3 1484 aa27.17■■□□□ 1.94
ITGA4-210ENST00000484404 SMARCA4P51532 1647 aa26.62■■□□□ 1.85
ITGA4-210ENST00000484404 ATAD2BQ9ULI0 1458 aa26.45■■□□□ 1.82
ITGA4-210ENST00000484404 BAZ1AQ9NRL2 1556 aaPredicted RBP26.45■■□□□ 1.82
ITGA4-210ENST00000484404 NCAPD3P42695 1498 aa26.42■■□□□ 1.82
ITGA4-210ENST00000484404 SMARCA2P51531 1590 aa26.42■■□□□ 1.82
ITGA4-210ENST00000484404 HMGXB3Q12766 1538 aa26.35■■□□□ 1.81
ITGA4-210ENST00000484404 MROH2BQ7Z745 1585 aa26.33■■□□□ 1.81
ITGA4-210ENST00000484404 BAZ1BQ9UIG0 1483 aaKnown RBP26.27■■□□□ 1.8
ITGA4-210ENST00000484404 PEG3Q9GZU2 1588 aa26.24■■□□□ 1.79
ITGA4-210ENST00000484404 WIZO95785 1651 aa26.13■■□□□ 1.77
ITGA4-210ENST00000484404 NESP48681 1621 aa26.11■■□□□ 1.77
ITGA4-210ENST00000484404 ERCC6Q03468 1493 aa26.09■■□□□ 1.77
ITGA4-210ENST00000484404 KIF21AQ7Z4S6 1674 aa25.9■■□□□ 1.74
ITGA4-210ENST00000484404 LAMC3Q9Y6N6 1575 aa25.9■■□□□ 1.74
ITGA4-210ENST00000484404 CUX2O14529 1486 aa25.85■■□□□ 1.73
ITGA4-210ENST00000484404 THOC2Q8NI27 1593 aaKnown RBP25.81■■□□□ 1.72
ITGA4-210ENST00000484404 RSF1Q96T23 1441 aaPredicted RBP25.8■■□□□ 1.72
ITGA4-210ENST00000484404 TOP2AP11388 1531 aaKnown RBP25.71■■□□□ 1.71
ITGA4-210ENST00000484404 PDS5BQ9NTI5 1447 aa25.65■■□□□ 1.7
ITGA4-210ENST00000484404 CADPSQ9ULU8 1353 aa25.65■■□□□ 1.7
ITGA4-210ENST00000484404 PRDM2Q13029 1718 aa25.49■■□□□ 1.67
ITGA4-210ENST00000484404 MRC2Q9UBG0 1479 aa25.49■■□□□ 1.67
ITGA4-210ENST00000484404 CEP164Q9UPV0 1460 aa25.47■■□□□ 1.67
ITGA4-210ENST00000484404 CFTRP13569 1480 aa25.45■■□□□ 1.66
ITGA4-210ENST00000484404 FANCD2Q9BXW9 1451 aa25.45■■□□□ 1.66
ITGA4-210ENST00000484404 WDR62O43379 1518 aa25.43■■□□□ 1.66
ITGA4-210ENST00000484404 DNAJC5Q9H3Z4 198 aa25.43■■□□□ 1.66
ITGA4-210ENST00000484404 CCDC88BA6NC98 1476 aa25.38■■□□□ 1.65
ITGA4-210ENST00000484404 URB2Q14146 1524 aaKnown RBP25.26■■□□□ 1.63
ITGA4-210ENST00000484404 TOPBP1Q92547 1522 aa25.02■■□□□ 1.6
ITGA4-210ENST00000484404 DNMBPQ6XZF7 1577 aa24.98■■□□□ 1.59
ITGA4-210ENST00000484404 SUPT5HO00267 1087 aaKnown RBP24.96■■□□□ 1.59
ITGA4-210ENST00000484404 ZNF608Q9ULD9 1512 aaPredicted RBP24.91■■□□□ 1.58
ITGA4-210ENST00000484404 IFT140Q96RY7 1462 aa24.89■■□□□ 1.57
ITGA4-210ENST00000484404 EIF4G3O43432 1585 aaKnown RBP24.86■■□□□ 1.57
ITGA4-210ENST00000484404 ABCC8Q09428 1581 aa24.86■■□□□ 1.57
ITGA4-210ENST00000484404 TARBP1Q13395 1621 aaKnown RBP24.82■■□□□ 1.56
ITGA4-210ENST00000484404 POLA1P09884 1462 aaPredicted RBP24.77■■□□□ 1.56
ITGA4-210ENST00000484404 CUX1P39880 1505 aa24.73■■□□□ 1.55
ITGA4-210ENST00000484404 RAD54L2Q9Y4B4 1467 aa24.71■■□□□ 1.55
ITGA4-210ENST00000484404 CHD1O14646 1710 aa24.71■■□□□ 1.55
ITGA4-210ENST00000484404 FGD5Q6ZNL6 1462 aa24.7■■□□□ 1.54
ITGA4-210ENST00000484404 AQRO60306 1485 aaKnown RBP eCLIP24.69■■□□□ 1.54
ITGA4-210ENST00000484404 OSCARQ8IYS5 282 aa24.66■■□□□ 1.54
ITGA4-210ENST00000484404 SOGA1O94964 1423 aa24.61■■□□□ 1.53
ITGA4-210ENST00000484404 WDR97A6NE52 1622 aa24.61■■□□□ 1.53
ITGA4-210ENST00000484404 TRIM41Q8WV44 630 aa24.61■■□□□ 1.53
ITGA4-210ENST00000484404 TDRD9Q8NDG6 1382 aaKnown RBP24.56■■□□□ 1.52
ITGA4-210ENST00000484404 PBRM1Q86U86 1689 aa24.53■■□□□ 1.52
ITGA4-210ENST00000484404 RIMBP3CA6NJZ7 1639 aa24.53■■□□□ 1.52
ITGA4-210ENST00000484404 RIMBP3BA6NNM3 1639 aa24.53■■□□□ 1.52
ITGA4-210ENST00000484404 RIMBP3Q9UFD9 1639 aa24.53■■□□□ 1.52
ITGA4-210ENST00000484404 SNAPC4Q5SXM2 1469 aa24.48■■□□□ 1.51
ITGA4-210ENST00000484404 FBLN2P98095 1184 aa24.47■■□□□ 1.51
ITGA4-210ENST00000484404 BIVM-ERCC5R4GMW8 1640 aa24.46■■□□□ 1.51
ITGA4-210ENST00000484404 SYNJ1O43426 1573 aa24.46■■□□□ 1.51
ITGA4-210ENST00000484404 TOP2BQ02880 1626 aa24.41■■□□□ 1.5
ITGA4-210ENST00000484404 ARHGEF11O15085 1522 aa24.4■■□□□ 1.5
ITGA4-210ENST00000484404 ABCA5Q8WWZ7 1642 aa24.4■■□□□ 1.5
ITGA4-210ENST00000484404 GRIN2BQ13224 1484 aa24.38■■□□□ 1.49
ITGA4-210ENST00000484404 WRNQ14191 1432 aaPredicted RBP eCLIP24.36■■□□□ 1.49
ITGA4-210ENST00000484404 ABCA10Q8WWZ4 1543 aa24.35■■□□□ 1.49
ITGA4-210ENST00000484404 GAPVD1Q14C86 1478 aa24.35■■□□□ 1.49
ITGA4-210ENST00000484404 MAGI1Q96QZ7 1491 aaPredicted RBP24.34■■□□□ 1.49
ITGA4-210ENST00000484404 SYNJ2O15056 1496 aa24.27■■□□□ 1.48
ITGA4-210ENST00000484404 CLASP1Q7Z460 1538 aa24.26■■□□□ 1.47
ITGA4-210ENST00000484404 CHMP7Q8WUX9 453 aaPredicted RBP24.26■■□□□ 1.47
ITGA4-210ENST00000484404 ADAMTS12P58397 1594 aa24.21■■□□□ 1.47
ITGA4-210ENST00000484404 ARAP1Q96P48 1450 aa24.19■■□□□ 1.46
ITGA4-210ENST00000484404 CYB5RLQ6IPT4 315 aa24.14■■□□□ 1.45
ITGA4-210ENST00000484404 GRIN2AQ12879 1464 aa24.1■■□□□ 1.45
ITGA4-210ENST00000484404 CEP170Q5SW79 1584 aa24.08■■□□□ 1.45
ITGA4-210ENST00000484404 ERICH3Q5RHP9 1530 aa24.06■■□□□ 1.44
ITGA4-210ENST00000484404 FHAD1B1AJZ9 1412 aa24.01■■□□□ 1.43
ITGA4-210ENST00000484404 ERCC6L2Q5T890 1561 aa23.99■■□□□ 1.43
ITGA4-210ENST00000484404 NUP160Q12769 1436 aa23.95■■□□□ 1.42
ITGA4-210ENST00000484404 SHROOM2Q13796 1616 aa23.92■■□□□ 1.42
ITGA4-210ENST00000484404 CUL7Q14999 1698 aa23.87■■□□□ 1.41
ITGA4-210ENST00000484404 RUSC2Q8N2Y8 1516 aa23.87■■□□□ 1.41
ITGA4-210ENST00000484404 KIF27Q86VH2 1401 aa23.84■■□□□ 1.41
ITGA4-210ENST00000484404 TRHP20396 242 aaPredicted RBP23.82■■□□□ 1.4
ITGA4-210ENST00000484404 IGF1RP08069 1367 aa23.76■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms