RNA–Protein interactions for RNA: ENST00000484378.1

HLA-C-207, Transcript of major histocompatibility complex, class I, C, humanhuman

Gene HLA-C, Length 862 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-C-207ENST00000484378 NISCHQ9Y2I1 1504 aa70.52■■■■■ 8.88
HLA-C-207ENST00000484378 CCDC180Q9P1Z9 1646 aa63.15■■■■■ 7.7
HLA-C-207ENST00000484378 ABCC9O60706 1549 aa62.7■■■■■ 7.63
HLA-C-207ENST00000484378 RB1CC1Q8TDY2 1594 aa59.9■■■■■ 7.18
HLA-C-207ENST00000484378 NACADO15069 1562 aa59.57■■■■■ 7.13
HLA-C-207ENST00000484378 DCAF8L2P0C7V8 631 aa59.33■■■■■ 7.09
HLA-C-207ENST00000484378 MYO15BQ96JP2 1530 aa58.87■■■■■ 7.01
HLA-C-207ENST00000484378 ZCCHC6Q5VYS8 1495 aaKnown RBP58.56■■■■■ 6.97
HLA-C-207ENST00000484378 UNC13AQ9UPW8 1703 aa58.52■■■■■ 6.96
HLA-C-207ENST00000484378 PABPN1Q86U42 306 aaKnown RBP eCLIP58.4■■■■■ 6.94
HLA-C-207ENST00000484378 DNAJC5BQ9UF47 199 aa58.33■■■■■ 6.93
HLA-C-207ENST00000484378 DCAF1Q9Y4B6 1507 aa58.28■■■■■ 6.92
HLA-C-207ENST00000484378 BICRAQ9NZM4 1560 aa58.09■■■■■ 6.89
HLA-C-207ENST00000484378 SCRIBQ14160 1630 aa57.58■■■■■ 6.81
HLA-C-207ENST00000484378 SHROOM4Q9ULL8 1493 aa57.41■■■■■ 6.78
HLA-C-207ENST00000484378 CC2D2AQ9P2K1 1620 aa56.66■■■■■ 6.66
HLA-C-207ENST00000484378 EIF4G1Q04637 1599 aaKnown RBP56.66■■■■■ 6.66
HLA-C-207ENST00000484378 CECR2Q9BXF3 1484 aa56.44■■■■■ 6.63
HLA-C-207ENST00000484378 SMARCA4P51532 1647 aa54.95■■■■■ 6.39
HLA-C-207ENST00000484378 NCAPD3P42695 1498 aa54.95■■■■■ 6.39
HLA-C-207ENST00000484378 ATAD2BQ9ULI0 1458 aa54.86■■■■■ 6.37
HLA-C-207ENST00000484378 SMARCA2P51531 1590 aa54.78■■■■■ 6.36
HLA-C-207ENST00000484378 BAZ1AQ9NRL2 1556 aaPredicted RBP54.75■■■■■ 6.35
HLA-C-207ENST00000484378 HMGXB3Q12766 1538 aa54.64■■■■■ 6.34
HLA-C-207ENST00000484378 BAZ1BQ9UIG0 1483 aaKnown RBP54.4■■■■■ 6.3
HLA-C-207ENST00000484378 PEG3Q9GZU2 1588 aa54.39■■■■■ 6.3
HLA-C-207ENST00000484378 MROH2BQ7Z745 1585 aa54.34■■■■■ 6.29
HLA-C-207ENST00000484378 ERCC6Q03468 1493 aa54.16■■■■■ 6.26
HLA-C-207ENST00000484378 NESP48681 1621 aa53.97■■■■■ 6.23
HLA-C-207ENST00000484378 CUX2O14529 1486 aa53.88■■■■■ 6.22
HLA-C-207ENST00000484378 WIZO95785 1651 aa53.73■■■■■ 6.19
HLA-C-207ENST00000484378 LAMC3Q9Y6N6 1575 aa53.7■■■■■ 6.19
HLA-C-207ENST00000484378 THOC2Q8NI27 1593 aaKnown RBP53.37■■■■■ 6.13
HLA-C-207ENST00000484378 RSF1Q96T23 1441 aaPredicted RBP53.36■■■■■ 6.13
HLA-C-207ENST00000484378 PDS5BQ9NTI5 1447 aa53.36■■■■■ 6.13
HLA-C-207ENST00000484378 KIF21AQ7Z4S6 1674 aa53.33■■■■■ 6.13
HLA-C-207ENST00000484378 CADPSQ9ULU8 1353 aa53.31■■■■■ 6.12
HLA-C-207ENST00000484378 DNAJC5Q9H3Z4 198 aa53.27■■■■■ 6.12
HLA-C-207ENST00000484378 TOP2AP11388 1531 aaKnown RBP53.11■■■■■ 6.09
HLA-C-207ENST00000484378 MRC2Q9UBG0 1479 aa52.89■■■■■ 6.06
HLA-C-207ENST00000484378 CFTRP13569 1480 aa52.81■■■■■ 6.04
HLA-C-207ENST00000484378 CEP164Q9UPV0 1460 aa52.79■■■■■ 6.04
HLA-C-207ENST00000484378 WDR62O43379 1518 aa52.74■■■■■ 6.03
HLA-C-207ENST00000484378 FANCD2Q9BXW9 1451 aa52.74■■■■■ 6.03
HLA-C-207ENST00000484378 CCDC88BA6NC98 1476 aa52.45■■■■■ 5.99
HLA-C-207ENST00000484378 PRDM2Q13029 1718 aa52.37■■■■■ 5.97
HLA-C-207ENST00000484378 URB2Q14146 1524 aaKnown RBP52.26■■■■■ 5.96
HLA-C-207ENST00000484378 TOPBP1Q92547 1522 aa51.79■■■■■ 5.88
HLA-C-207ENST00000484378 ABCC8Q09428 1581 aa51.7■■■■■ 5.87
HLA-C-207ENST00000484378 IFT140Q96RY7 1462 aa51.69■■■■■ 5.87
HLA-C-207ENST00000484378 DNMBPQ6XZF7 1577 aa51.66■■■■■ 5.86
HLA-C-207ENST00000484378 ZNF608Q9ULD9 1512 aaPredicted RBP51.54■■■■■ 5.84
HLA-C-207ENST00000484378 OSCARQ8IYS5 282 aa51.43■■■■■ 5.82
HLA-C-207ENST00000484378 EIF4G3O43432 1585 aaKnown RBP51.34■■■■■ 5.81
HLA-C-207ENST00000484378 SUPT5HO00267 1087 aaKnown RBP51.33■■■■■ 5.81
HLA-C-207ENST00000484378 TARBP1Q13395 1621 aaKnown RBP51.29■■■■■ 5.8
HLA-C-207ENST00000484378 POLA1P09884 1462 aaPredicted RBP51.29■■■■■ 5.8
HLA-C-207ENST00000484378 TRIM41Q8WV44 630 aa51.19■■■■■ 5.79
HLA-C-207ENST00000484378 AQRO60306 1485 aaKnown RBP eCLIP51.12■■■■■ 5.776e-7■■■■■ 27.8
HLA-C-207ENST00000484378 RAD54L2Q9Y4B4 1467 aa51.07■■■■■ 5.77
HLA-C-207ENST00000484378 CUX1P39880 1505 aa51.05■■■■■ 5.76
HLA-C-207ENST00000484378 SOGA1O94964 1423 aa51.04■■■■■ 5.76
HLA-C-207ENST00000484378 FGD5Q6ZNL6 1462 aa51.03■■■■■ 5.76
HLA-C-207ENST00000484378 TDRD9Q8NDG6 1382 aaKnown RBP50.88■■■■■ 5.74
HLA-C-207ENST00000484378 CHD1O14646 1710 aa50.87■■■■■ 5.73
HLA-C-207ENST00000484378 WDR97A6NE52 1622 aa50.84■■■■■ 5.73
HLA-C-207ENST00000484378 RIMBP3CA6NJZ7 1639 aa50.77■■■■■ 5.72
HLA-C-207ENST00000484378 RIMBP3BA6NNM3 1639 aa50.77■■■■■ 5.72
HLA-C-207ENST00000484378 RIMBP3Q9UFD9 1639 aa50.77■■■■■ 5.72
HLA-C-207ENST00000484378 FBLN2P98095 1184 aa50.72■■■■■ 5.71
HLA-C-207ENST00000484378 ARHGEF11O15085 1522 aa50.67■■■■■ 5.7
HLA-C-207ENST00000484378 SNAPC4Q5SXM2 1469 aa50.66■■■■■ 5.7
HLA-C-207ENST00000484378 GRIN2BQ13224 1484 aa50.58■■■■■ 5.69
HLA-C-207ENST00000484378 MAGI1Q96QZ7 1491 aaPredicted RBP50.54■■■■■ 5.68
HLA-C-207ENST00000484378 ABCA10Q8WWZ4 1543 aa50.47■■■■■ 5.67
HLA-C-207ENST00000484378 GAPVD1Q14C86 1478 aa50.46■■■■■ 5.67
HLA-C-207ENST00000484378 PBRM1Q86U86 1689 aa50.44■■■■■ 5.67
HLA-C-207ENST00000484378 CHMP7Q8WUX9 453 aaPredicted RBP50.41■■■■■ 5.66
HLA-C-207ENST00000484378 ABCA5Q8WWZ7 1642 aa50.38■■■■■ 5.66
HLA-C-207ENST00000484378 WRNQ14191 1432 aaPredicted RBP eCLIP50.36■■■■■ 5.65
HLA-C-207ENST00000484378 BIVM-ERCC5R4GMW8 1640 aa50.36■■■■■ 5.65
HLA-C-207ENST00000484378 SYNJ2O15056 1496 aa50.36■■■■■ 5.65
HLA-C-207ENST00000484378 TOP2BQ02880 1626 aa50.36■■■■■ 5.65
HLA-C-207ENST00000484378 SYNJ1O43426 1573 aa50.31■■■■■ 5.64
HLA-C-207ENST00000484378 CLASP1Q7Z460 1538 aa50.27■■■■■ 5.64
HLA-C-207ENST00000484378 CYB5RLQ6IPT4 315 aa50.21■■■■■ 5.63
HLA-C-207ENST00000484378 ARAP1Q96P48 1450 aa50.19■■■■■ 5.62
HLA-C-207ENST00000484378 ADAMTS12P58397 1594 aa49.99■■■■■ 5.59
HLA-C-207ENST00000484378 GRIN2AQ12879 1464 aa49.93■■■■■ 5.58
HLA-C-207ENST00000484378 ERICH3Q5RHP9 1530 aa49.86■■■■■ 5.57
HLA-C-207ENST00000484378 FHAD1B1AJZ9 1412 aa49.83■■■■■ 5.57
HLA-C-207ENST00000484378 CEP170Q5SW79 1584 aa49.73■■■■■ 5.55
HLA-C-207ENST00000484378 NUP160Q12769 1436 aa49.72■■■■■ 5.55
HLA-C-207ENST00000484378 TRHP20396 242 aaPredicted RBP49.55■■■■■ 5.52
HLA-C-207ENST00000484378 ERCC6L2Q5T890 1561 aa49.5■■■■■ 5.52
HLA-C-207ENST00000484378 SHROOM2Q13796 1616 aa49.47■■■■■ 5.51
HLA-C-207ENST00000484378 KIF27Q86VH2 1401 aa49.39■■■■■ 5.5
HLA-C-207ENST00000484378 RUSC2Q8N2Y8 1516 aa49.28■■■■■ 5.48
HLA-C-207ENST00000484378 IGF1RP08069 1367 aa49.26■■■■■ 5.48
HLA-C-207ENST00000484378 CUL7Q14999 1698 aa49.25■■■■■ 5.47
Retrieved 100 of 20,778 RNA–protein pairs in 112.9 ms