RNA–Protein interactions for RNA: ENST00000484328.1

NCL-209, Transcript of nucleolin, humanhuman

TSL 2

Gene NCL, Length 369 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCL-209ENST00000484328 NISCHQ9Y2I1 1504 aa15.49■□□□□ 0.07
NCL-209ENST00000484328 CCDC180Q9P1Z9 1646 aa13.78□□□□□ -0.2
NCL-209ENST00000484328 ABCC9O60706 1549 aa13.11□□□□□ -0.31
NCL-209ENST00000484328 ZCCHC6Q5VYS8 1495 aaKnown RBP12.99□□□□□ -0.33
NCL-209ENST00000484328 DCAF1Q9Y4B6 1507 aa12.89□□□□□ -0.35
NCL-209ENST00000484328 MYO15BQ96JP2 1530 aa12.88□□□□□ -0.35
NCL-209ENST00000484328 AEBP2Q6ZN18 517 aaPredicted RBP12.87□□□□□ -0.35
NCL-209ENST00000484328 NACADO15069 1562 aa12.83□□□□□ -0.36
NCL-209ENST00000484328 RB1CC1Q8TDY2 1594 aa12.78□□□□□ -0.36
NCL-209ENST00000484328 DCAF8L2P0C7V8 631 aa12.6□□□□□ -0.39
NCL-209ENST00000484328 UNC13AQ9UPW8 1703 aa12.57□□□□□ -0.4
NCL-209ENST00000484328 SCRIBQ14160 1630 aa12.49□□□□□ -0.41
NCL-209ENST00000484328 BICRAQ9NZM4 1560 aa12.43□□□□□ -0.42
NCL-209ENST00000484328 SHROOM4Q9ULL8 1493 aa12.35□□□□□ -0.43
NCL-209ENST00000484328 PABPN1Q86U42 306 aaKnown RBP eCLIP12.2□□□□□ -0.46
NCL-209ENST00000484328 EIF4G1Q04637 1599 aaKnown RBP12.05□□□□□ -0.48
NCL-209ENST00000484328 SMARCA4P51532 1647 aa12.01□□□□□ -0.49
NCL-209ENST00000484328 CECR2Q9BXF3 1484 aa12.01□□□□□ -0.49
NCL-209ENST00000484328 BAZ1AQ9NRL2 1556 aaPredicted RBP12.01□□□□□ -0.49
NCL-209ENST00000484328 CHIC1Q5VXU3 224 aa11.95□□□□□ -0.5
NCL-209ENST00000484328 CC2D2AQ9P2K1 1620 aa11.93□□□□□ -0.5
NCL-209ENST00000484328 MROH2BQ7Z745 1585 aa11.93□□□□□ -0.5
NCL-209ENST00000484328 PEG3Q9GZU2 1588 aa11.93□□□□□ -0.5
NCL-209ENST00000484328 SMARCA2P51531 1590 aa11.87□□□□□ -0.51
NCL-209ENST00000484328 RSF1Q96T23 1441 aaPredicted RBP11.85□□□□□ -0.51
NCL-209ENST00000484328 ATAD2BQ9ULI0 1458 aa11.83□□□□□ -0.52
NCL-209ENST00000484328 HMGXB3Q12766 1538 aa11.83□□□□□ -0.52
NCL-209ENST00000484328 WIZO95785 1651 aa11.83□□□□□ -0.52
NCL-209ENST00000484328 NCAPD3P42695 1498 aa11.81□□□□□ -0.52
NCL-209ENST00000484328 DNAJC5BQ9UF47 199 aa11.79□□□□□ -0.52
NCL-209ENST00000484328 BAZ1BQ9UIG0 1483 aaKnown RBP11.74□□□□□ -0.53
NCL-209ENST00000484328 TOP2AP11388 1531 aaKnown RBP11.74□□□□□ -0.53
NCL-209ENST00000484328 SUPT5HO00267 1087 aaKnown RBP11.55□□□□□ -0.56
NCL-209ENST00000484328 CCDC88BA6NC98 1476 aa11.53□□□□□ -0.56
NCL-209ENST00000484328 PRDM2Q13029 1718 aa11.5□□□□□ -0.57
NCL-209ENST00000484328 LAMC3Q9Y6N6 1575 aa11.5□□□□□ -0.57
NCL-209ENST00000484328 CFTRP13569 1480 aa11.45□□□□□ -0.58
NCL-209ENST00000484328 NESP48681 1621 aa11.43□□□□□ -0.58
NCL-209ENST00000484328 CADPSQ9ULU8 1353 aa11.42□□□□□ -0.58
NCL-209ENST00000484328 KIF21AQ7Z4S6 1674 aa11.38□□□□□ -0.59
NCL-209ENST00000484328 PDS5BQ9NTI5 1447 aa11.33□□□□□ -0.6
NCL-209ENST00000484328 FANCD2Q9BXW9 1451 aa11.32□□□□□ -0.6
NCL-209ENST00000484328 THOC2Q8NI27 1593 aaKnown RBP11.31□□□□□ -0.6
NCL-209ENST00000484328 CEP164Q9UPV0 1460 aa11.3□□□□□ -0.6
NCL-209ENST00000484328 ERCC6Q03468 1493 aa11.27□□□□□ -0.6
NCL-209ENST00000484328 WDR62O43379 1518 aa11.25□□□□□ -0.61
NCL-209ENST00000484328 MRC2Q9UBG0 1479 aa11.25□□□□□ -0.61
NCL-209ENST00000484328 URB2Q14146 1524 aaKnown RBP11.22□□□□□ -0.61
NCL-209ENST00000484328 DNMBPQ6XZF7 1577 aa11.22□□□□□ -0.61
NCL-209ENST00000484328 POTEDQ86YR6 584 aa11.22□□□□□ -0.61
NCL-209ENST00000484328 BIVM-ERCC5R4GMW8 1640 aa11.21□□□□□ -0.61
NCL-209ENST00000484328 ABCC8Q09428 1581 aa11.2□□□□□ -0.62
NCL-209ENST00000484328 CUX1P39880 1505 aa11.19□□□□□ -0.62
NCL-209ENST00000484328 TOPBP1Q92547 1522 aa11.19□□□□□ -0.62
NCL-209ENST00000484328 TOP2BQ02880 1626 aa11.18□□□□□ -0.62
NCL-209ENST00000484328 SYNJ1O43426 1573 aa11.18□□□□□ -0.62
NCL-209ENST00000484328 WRNQ14191 1432 aaPredicted RBP eCLIP11.16□□□□□ -0.62
NCL-209ENST00000484328 CUX2O14529 1486 aa11.14□□□□□ -0.63
NCL-209ENST00000484328 WDR97A6NE52 1622 aa11.12□□□□□ -0.63
NCL-209ENST00000484328 POLA1P09884 1462 aaPredicted RBP11.11□□□□□ -0.63
NCL-209ENST00000484328 TARBP1Q13395 1621 aaKnown RBP11.1□□□□□ -0.63
NCL-209ENST00000484328 FGD5Q6ZNL6 1462 aa11.1□□□□□ -0.63
NCL-209ENST00000484328 IFT140Q96RY7 1462 aa11.06□□□□□ -0.64
NCL-209ENST00000484328 SENP3Q9H4L4 574 aaPredicted RBP11.05□□□□□ -0.64
NCL-209ENST00000484328 ABCA10Q8WWZ4 1543 aa11.03□□□□□ -0.64
NCL-209ENST00000484328 ABCA5Q8WWZ7 1642 aa11.02□□□□□ -0.64
NCL-209ENST00000484328 EIF4G3O43432 1585 aaKnown RBP11.01□□□□□ -0.65
NCL-209ENST00000484328 RAD54L2Q9Y4B4 1467 aa11□□□□□ -0.65
NCL-209ENST00000484328 SOGA1O94964 1423 aa11□□□□□ -0.65
NCL-209ENST00000484328 ZNF608Q9ULD9 1512 aaPredicted RBP10.97□□□□□ -0.65
NCL-209ENST00000484328 PBRM1Q86U86 1689 aa10.97□□□□□ -0.65
NCL-209ENST00000484328 TRIM41Q8WV44 630 aa10.92□□□□□ -0.66
NCL-209ENST00000484328 ERICH3Q5RHP9 1530 aa10.91□□□□□ -0.66
NCL-209ENST00000484328 GAPVD1Q14C86 1478 aa10.9□□□□□ -0.66
NCL-209ENST00000484328 KIF27Q86VH2 1401 aa10.9□□□□□ -0.66
NCL-209ENST00000484328 AQRO60306 1485 aaKnown RBP eCLIP10.89□□□□□ -0.676e-17■■■■□ 21.4
NCL-209ENST00000484328 GRIN2BQ13224 1484 aa10.89□□□□□ -0.67
NCL-209ENST00000484328 TDRD9Q8NDG6 1382 aaKnown RBP10.89□□□□□ -0.67
NCL-209ENST00000484328 CUL7Q14999 1698 aa10.89□□□□□ -0.67
NCL-209ENST00000484328 ADAMTS12P58397 1594 aa10.88□□□□□ -0.67
NCL-209ENST00000484328 MAGI1Q96QZ7 1491 aaPredicted RBP10.87□□□□□ -0.67
NCL-209ENST00000484328 RUSC2Q8N2Y8 1516 aa10.86□□□□□ -0.67
NCL-209ENST00000484328 EEA1Q15075 1411 aa10.85□□□□□ -0.67
NCL-209ENST00000484328 SNAPC4Q5SXM2 1469 aa10.85□□□□□ -0.67
NCL-209ENST00000484328 CHD1O14646 1710 aa10.83□□□□□ -0.68
NCL-209ENST00000484328 PHF23Q9BUL5 403 aaPredicted RBP10.81□□□□□ -0.68
NCL-209ENST00000484328 SYNJ2O15056 1496 aa10.81□□□□□ -0.68
NCL-209ENST00000484328 IGF1RP08069 1367 aa10.8□□□□□ -0.68
NCL-209ENST00000484328 FHAD1B1AJZ9 1412 aa10.79□□□□□ -0.68
NCL-209ENST00000484328 KIF21BO75037 1637 aa10.79□□□□□ -0.68
NCL-209ENST00000484328 PRXQ9BXM0 1461 aa10.79□□□□□ -0.68
NCL-209ENST00000484328 GRIN2AQ12879 1464 aa10.77□□□□□ -0.69
NCL-209ENST00000484328 CEP170Q5SW79 1584 aa10.74□□□□□ -0.69
NCL-209ENST00000484328 RAPGEF2Q9Y4G8 1499 aa10.74□□□□□ -0.69
NCL-209ENST00000484328 CARMIL1Q5VZK9 1371 aa10.73□□□□□ -0.69
NCL-209ENST00000484328 CTTNBP2Q8WZ74 1663 aa10.73□□□□□ -0.69
NCL-209ENST00000484328 NUP160Q12769 1436 aa10.72□□□□□ -0.69
NCL-209ENST00000484328 CLASP1Q7Z460 1538 aa10.72□□□□□ -0.69
NCL-209ENST00000484328 CSRNP3Q8WYN3 585 aa10.71□□□□□ -0.69
NCL-209ENST00000484328 SHROOM2Q13796 1616 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms