RNA–Protein interactions for RNA: ENST00000483882.1

NR1H3-222, Transcript of nuclear receptor subfamily 1 group H member 3, humanhuman

TSL 2

Gene NR1H3, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H3-222ENST00000483882 NISCHQ9Y2I1 1504 aa36.53■■■■□ 3.44
NR1H3-222ENST00000483882 ABCC9O60706 1549 aa32.82■■■□□ 2.84
NR1H3-222ENST00000483882 CCDC180Q9P1Z9 1646 aa32.74■■■□□ 2.83
NR1H3-222ENST00000483882 RB1CC1Q8TDY2 1594 aa31.2■■■□□ 2.58
NR1H3-222ENST00000483882 NACADO15069 1562 aa30.97■■■□□ 2.55
NR1H3-222ENST00000483882 DCAF8L2P0C7V8 631 aa30.94■■■□□ 2.54
NR1H3-222ENST00000483882 DNAJC5BQ9UF47 199 aa30.73■■■□□ 2.51
NR1H3-222ENST00000483882 PABPN1Q86U42 306 aaKnown RBP eCLIP30.57■■■□□ 2.48
NR1H3-222ENST00000483882 MYO15BQ96JP2 1530 aa30.51■■■□□ 2.47
NR1H3-222ENST00000483882 UNC13AQ9UPW8 1703 aa30.44■■■□□ 2.46
NR1H3-222ENST00000483882 ZCCHC6Q5VYS8 1495 aaKnown RBP30.28■■■□□ 2.44
NR1H3-222ENST00000483882 BICRAQ9NZM4 1560 aa30.26■■■□□ 2.43
NR1H3-222ENST00000483882 DCAF1Q9Y4B6 1507 aa30.14■■■□□ 2.42
NR1H3-222ENST00000483882 SCRIBQ14160 1630 aa29.91■■■□□ 2.38
NR1H3-222ENST00000483882 SHROOM4Q9ULL8 1493 aa29.84■■■□□ 2.37
NR1H3-222ENST00000483882 CC2D2AQ9P2K1 1620 aa29.6■■■□□ 2.33
NR1H3-222ENST00000483882 EIF4G1Q04637 1599 aaKnown RBP29.54■■■□□ 2.32
NR1H3-222ENST00000483882 CECR2Q9BXF3 1484 aa29.54■■■□□ 2.32
NR1H3-222ENST00000483882 NCAPD3P42695 1498 aa28.59■■■□□ 2.17
NR1H3-222ENST00000483882 ATAD2BQ9ULI0 1458 aa28.53■■■□□ 2.16
NR1H3-222ENST00000483882 SMARCA4P51532 1647 aa28.5■■■□□ 2.15
NR1H3-222ENST00000483882 SMARCA2P51531 1590 aa28.44■■■□□ 2.14
NR1H3-222ENST00000483882 HMGXB3Q12766 1538 aa28.38■■■□□ 2.13
NR1H3-222ENST00000483882 BAZ1AQ9NRL2 1556 aaPredicted RBP28.36■■■□□ 2.13
NR1H3-222ENST00000483882 ERCC6Q03468 1493 aa28.34■■■□□ 2.13
NR1H3-222ENST00000483882 BAZ1BQ9UIG0 1483 aaKnown RBP28.27■■■□□ 2.12
NR1H3-222ENST00000483882 CUX2O14529 1486 aa28.23■■■□□ 2.11
NR1H3-222ENST00000483882 DNAJC5Q9H3Z4 198 aa28.21■■■□□ 2.11
NR1H3-222ENST00000483882 PEG3Q9GZU2 1588 aa28.18■■■□□ 2.1
NR1H3-222ENST00000483882 NESP48681 1621 aa28.18■■■□□ 2.1
NR1H3-222ENST00000483882 MROH2BQ7Z745 1585 aa28.16■■■□□ 2.1
NR1H3-222ENST00000483882 LAMC3Q9Y6N6 1575 aa27.95■■■□□ 2.07
NR1H3-222ENST00000483882 THOC2Q8NI27 1593 aaKnown RBP27.86■■■□□ 2.05
NR1H3-222ENST00000483882 WIZO95785 1651 aa27.82■■■□□ 2.04
NR1H3-222ENST00000483882 PDS5BQ9NTI5 1447 aa27.82■■■□□ 2.04
NR1H3-222ENST00000483882 KIF21AQ7Z4S6 1674 aa27.78■■■□□ 2.04
NR1H3-222ENST00000483882 CADPSQ9ULU8 1353 aa27.75■■■□□ 2.03
NR1H3-222ENST00000483882 RSF1Q96T23 1441 aaPredicted RBP27.58■■■□□ 2.01
NR1H3-222ENST00000483882 MRC2Q9UBG0 1479 aa27.58■■■□□ 2.01
NR1H3-222ENST00000483882 WDR62O43379 1518 aa27.48■■□□□ 1.99
NR1H3-222ENST00000483882 CEP164Q9UPV0 1460 aa27.48■■□□□ 1.99
NR1H3-222ENST00000483882 TOP2AP11388 1531 aaKnown RBP27.47■■□□□ 1.99
NR1H3-222ENST00000483882 FANCD2Q9BXW9 1451 aa27.44■■□□□ 1.98
NR1H3-222ENST00000483882 CFTRP13569 1480 aa27.42■■□□□ 1.98
NR1H3-222ENST00000483882 URB2Q14146 1524 aaKnown RBP27.21■■□□□ 1.95
NR1H3-222ENST00000483882 CCDC88BA6NC98 1476 aa27.17■■□□□ 1.94
NR1H3-222ENST00000483882 PRDM2Q13029 1718 aa27.1■■□□□ 1.93
NR1H3-222ENST00000483882 TRIM41Q8WV44 630 aa27.07■■□□□ 1.92
NR1H3-222ENST00000483882 OSCARQ8IYS5 282 aa26.98■■□□□ 1.91
NR1H3-222ENST00000483882 IFT140Q96RY7 1462 aa26.92■■□□□ 1.9
NR1H3-222ENST00000483882 TOPBP1Q92547 1522 aa26.91■■□□□ 1.9
NR1H3-222ENST00000483882 ZNF608Q9ULD9 1512 aaPredicted RBP26.88■■□□□ 1.89
NR1H3-222ENST00000483882 ABCC8Q09428 1581 aa26.85■■□□□ 1.89
NR1H3-222ENST00000483882 SUPT5HO00267 1087 aaKnown RBP26.83■■□□□ 1.89
NR1H3-222ENST00000483882 DNMBPQ6XZF7 1577 aa26.81■■□□□ 1.88
NR1H3-222ENST00000483882 EIF4G3O43432 1585 aaKnown RBP26.72■■□□□ 1.87
NR1H3-222ENST00000483882 AQRO60306 1485 aaKnown RBP eCLIP26.65■■□□□ 1.861e-7■■■□□ 16.7
NR1H3-222ENST00000483882 TARBP1Q13395 1621 aaKnown RBP26.65■■□□□ 1.86
NR1H3-222ENST00000483882 POLA1P09884 1462 aaPredicted RBP26.64■■□□□ 1.86
NR1H3-222ENST00000483882 RIMBP3CA6NJZ7 1639 aa26.6■■□□□ 1.85
NR1H3-222ENST00000483882 RIMBP3BA6NNM3 1639 aa26.6■■□□□ 1.85
NR1H3-222ENST00000483882 RIMBP3Q9UFD9 1639 aa26.6■■□□□ 1.85
NR1H3-222ENST00000483882 RAD54L2Q9Y4B4 1467 aa26.57■■□□□ 1.84
NR1H3-222ENST00000483882 SOGA1O94964 1423 aa26.54■■□□□ 1.84
NR1H3-222ENST00000483882 ARHGEF11O15085 1522 aa26.53■■□□□ 1.84
NR1H3-222ENST00000483882 FBLN2P98095 1184 aa26.52■■□□□ 1.84
NR1H3-222ENST00000483882 CHD1O14646 1710 aa26.51■■□□□ 1.83
NR1H3-222ENST00000483882 FGD5Q6ZNL6 1462 aa26.49■■□□□ 1.83
NR1H3-222ENST00000483882 TDRD9Q8NDG6 1382 aaKnown RBP26.49■■□□□ 1.83
NR1H3-222ENST00000483882 CUX1P39880 1505 aa26.45■■□□□ 1.83
NR1H3-222ENST00000483882 SNAPC4Q5SXM2 1469 aa26.38■■□□□ 1.81
NR1H3-222ENST00000483882 WDR97A6NE52 1622 aa26.37■■□□□ 1.81
NR1H3-222ENST00000483882 CYB5RLQ6IPT4 315 aa26.37■■□□□ 1.81
NR1H3-222ENST00000483882 CHMP7Q8WUX9 453 aaPredicted RBP26.3■■□□□ 1.8
NR1H3-222ENST00000483882 GRIN2BQ13224 1484 aa26.3■■□□□ 1.8
NR1H3-222ENST00000483882 MAGI1Q96QZ7 1491 aaPredicted RBP26.29■■□□□ 1.8
NR1H3-222ENST00000483882 ARAP1Q96P48 1450 aa26.27■■□□□ 1.8
NR1H3-222ENST00000483882 SYNJ1O43426 1573 aa26.21■■□□□ 1.79
NR1H3-222ENST00000483882 GAPVD1Q14C86 1478 aa26.21■■□□□ 1.79
NR1H3-222ENST00000483882 CLASP1Q7Z460 1538 aa26.2■■□□□ 1.79
NR1H3-222ENST00000483882 SYNJ2O15056 1496 aa26.2■■□□□ 1.78
NR1H3-222ENST00000483882 PBRM1Q86U86 1689 aa26.18■■□□□ 1.78
NR1H3-222ENST00000483882 ABCA10Q8WWZ4 1543 aa26.17■■□□□ 1.78
NR1H3-222ENST00000483882 ABCA5Q8WWZ7 1642 aa26.12■■□□□ 1.77
NR1H3-222ENST00000483882 TRHP20396 242 aaPredicted RBP26.11■■□□□ 1.77
NR1H3-222ENST00000483882 WRNQ14191 1432 aaPredicted RBP eCLIP26.08■■□□□ 1.77
NR1H3-222ENST00000483882 TOP2BQ02880 1626 aa26.02■■□□□ 1.76
NR1H3-222ENST00000483882 BIVM-ERCC5R4GMW8 1640 aa26.02■■□□□ 1.76
NR1H3-222ENST00000483882 GRIN2AQ12879 1464 aa25.96■■□□□ 1.75
NR1H3-222ENST00000483882 ADAMTS12P58397 1594 aa25.95■■□□□ 1.74
NR1H3-222ENST00000483882 FHAD1B1AJZ9 1412 aa25.88■■□□□ 1.73
NR1H3-222ENST00000483882 NUP160Q12769 1436 aa25.86■■□□□ 1.73
NR1H3-222ENST00000483882 CEP170Q5SW79 1584 aa25.86■■□□□ 1.73
NR1H3-222ENST00000483882 ERICH3Q5RHP9 1530 aa25.84■■□□□ 1.73
NR1H3-222ENST00000483882 ERCC6L2Q5T890 1561 aa25.82■■□□□ 1.72
NR1H3-222ENST00000483882 SHROOM2Q13796 1616 aa25.71■■□□□ 1.71
NR1H3-222ENST00000483882 PRG4Q92954 1404 aaPredicted RBP25.63■■□□□ 1.69
NR1H3-222ENST00000483882 JPH4Q96JJ6 628 aa25.62■■□□□ 1.69
NR1H3-222ENST00000483882 RUSC2Q8N2Y8 1516 aa25.57■■□□□ 1.68
NR1H3-222ENST00000483882 KIF27Q86VH2 1401 aa25.55■■□□□ 1.68
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms