RNA–Protein interactions for RNA: ENST00000483671.1

RFTN1-209, Transcript of raftlin, lipid raft linker 1, humanhuman

TSL 2

Gene RFTN1, Length 1,314 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFTN1-209ENST00000483671 NISCHQ9Y2I1 1504 aa37.47■■■■□ 3.59
RFTN1-209ENST00000483671 CCDC180Q9P1Z9 1646 aa32.84■■■□□ 2.85
RFTN1-209ENST00000483671 ZCCHC6Q5VYS8 1495 aaKnown RBP31.45■■■□□ 2.63
RFTN1-209ENST00000483671 DCAF1Q9Y4B6 1507 aa31.11■■■□□ 2.57
RFTN1-209ENST00000483671 ABCC9O60706 1549 aa31.07■■■□□ 2.56
RFTN1-209ENST00000483671 MYO15BQ96JP2 1530 aa30.87■■■□□ 2.53
RFTN1-209ENST00000483671 DCAF8L2P0C7V8 631 aa30.73■■■□□ 2.51
RFTN1-209ENST00000483671 NACADO15069 1562 aa30.64■■■□□ 2.5
RFTN1-209ENST00000483671 RB1CC1Q8TDY2 1594 aa30.39■■■□□ 2.46
RFTN1-209ENST00000483671 SHROOM4Q9ULL8 1493 aa30.13■■■□□ 2.41
RFTN1-209ENST00000483671 SCRIBQ14160 1630 aa30■■■□□ 2.39
RFTN1-209ENST00000483671 UNC13AQ9UPW8 1703 aa29.68■■■□□ 2.34
RFTN1-209ENST00000483671 BICRAQ9NZM4 1560 aa29.46■■■□□ 2.31
RFTN1-209ENST00000483671 PABPN1Q86U42 306 aaKnown RBP eCLIP29.2■■■□□ 2.26
RFTN1-209ENST00000483671 CECR2Q9BXF3 1484 aa29.04■■■□□ 2.24
RFTN1-209ENST00000483671 BAZ1AQ9NRL2 1556 aaPredicted RBP28.96■■■□□ 2.23
RFTN1-209ENST00000483671 RSF1Q96T23 1441 aaPredicted RBP28.95■■■□□ 2.22
RFTN1-209ENST00000483671 SUPT5HO00267 1087 aaKnown RBP28.88■■■□□ 2.21
RFTN1-209ENST00000483671 MROH2BQ7Z745 1585 aa28.88■■■□□ 2.21
RFTN1-209ENST00000483671 SMARCA4P51532 1647 aa28.83■■■□□ 2.21
RFTN1-209ENST00000483671 PEG3Q9GZU2 1588 aa28.6■■■□□ 2.17
RFTN1-209ENST00000483671 WIZO95785 1651 aa28.58■■■□□ 2.17
RFTN1-209ENST00000483671 EIF4G1Q04637 1599 aaKnown RBP28.58■■■□□ 2.17
RFTN1-209ENST00000483671 SMARCA2P51531 1590 aa28.44■■■□□ 2.14
RFTN1-209ENST00000483671 ATAD2BQ9ULI0 1458 aa28.43■■■□□ 2.14
RFTN1-209ENST00000483671 TOP2AP11388 1531 aaKnown RBP28.39■■■□□ 2.14
RFTN1-209ENST00000483671 NCAPD3P42695 1498 aa28.28■■■□□ 2.12
RFTN1-209ENST00000483671 HMGXB3Q12766 1538 aa28.23■■■□□ 2.11
RFTN1-209ENST00000483671 BAZ1BQ9UIG0 1483 aaKnown RBP28.22■■■□□ 2.11
RFTN1-209ENST00000483671 CC2D2AQ9P2K1 1620 aa28.18■■■□□ 2.1
RFTN1-209ENST00000483671 CCDC88BA6NC98 1476 aa28.04■■■□□ 2.08
RFTN1-209ENST00000483671 CHIC1Q5VXU3 224 aa27.65■■■□□ 2.02
RFTN1-209ENST00000483671 DNAJC5BQ9UF47 199 aa27.6■■■□□ 2.01
RFTN1-209ENST00000483671 CFTRP13569 1480 aa27.57■■■□□ 2
RFTN1-209ENST00000483671 CADPSQ9ULU8 1353 aa27.49■■□□□ 1.99
RFTN1-209ENST00000483671 PRDM2Q13029 1718 aa27.38■■□□□ 1.97
RFTN1-209ENST00000483671 LAMC3Q9Y6N6 1575 aa27.33■■□□□ 1.97
RFTN1-209ENST00000483671 ABCC8Q09428 1581 aa27.29■■□□□ 1.96
RFTN1-209ENST00000483671 TRIM41Q8WV44 630 aa27.27■■□□□ 1.96
RFTN1-209ENST00000483671 WRNQ14191 1432 aaPredicted RBP eCLIP27.24■■□□□ 1.95
RFTN1-209ENST00000483671 NESP48681 1621 aa27.21■■□□□ 1.95
RFTN1-209ENST00000483671 FANCD2Q9BXW9 1451 aa27.15■■□□□ 1.94
RFTN1-209ENST00000483671 PDS5BQ9NTI5 1447 aa27.11■■□□□ 1.93
RFTN1-209ENST00000483671 SYNJ1O43426 1573 aa27.11■■□□□ 1.93
RFTN1-209ENST00000483671 TOP2BQ02880 1626 aa27.08■■□□□ 1.93
RFTN1-209ENST00000483671 BIVM-ERCC5R4GMW8 1640 aa27.07■■□□□ 1.92
RFTN1-209ENST00000483671 CUX1P39880 1505 aa27.03■■□□□ 1.92
RFTN1-209ENST00000483671 CEP164Q9UPV0 1460 aa27.02■■□□□ 1.92
RFTN1-209ENST00000483671 DNMBPQ6XZF7 1577 aa26.91■■□□□ 1.9
RFTN1-209ENST00000483671 KIF21AQ7Z4S6 1674 aa26.9■■□□□ 1.9
RFTN1-209ENST00000483671 TOPBP1Q92547 1522 aa26.85■■□□□ 1.89
RFTN1-209ENST00000483671 URB2Q14146 1524 aaKnown RBP26.82■■□□□ 1.88
RFTN1-209ENST00000483671 EEA1Q15075 1411 aa26.82■■□□□ 1.88
RFTN1-209ENST00000483671 MRC2Q9UBG0 1479 aa26.78■■□□□ 1.88
RFTN1-209ENST00000483671 SOGA1O94964 1423 aa26.76■■□□□ 1.87
RFTN1-209ENST00000483671 FGD5Q6ZNL6 1462 aa26.76■■□□□ 1.87
RFTN1-209ENST00000483671 ERCC6Q03468 1493 aa26.69■■□□□ 1.86
RFTN1-209ENST00000483671 POLA1P09884 1462 aaPredicted RBP26.68■■□□□ 1.86
RFTN1-209ENST00000483671 WDR62O43379 1518 aa26.67■■□□□ 1.86
RFTN1-209ENST00000483671 RUSC2Q8N2Y8 1516 aa26.64■■□□□ 1.85
RFTN1-209ENST00000483671 FAM9AQ8IZU1 332 aaPredicted RBP26.62■■□□□ 1.85
RFTN1-209ENST00000483671 THOC2Q8NI27 1593 aaKnown RBP26.61■■□□□ 1.85
RFTN1-209ENST00000483671 KIF27Q86VH2 1401 aa26.6■■□□□ 1.85
RFTN1-209ENST00000483671 ABCA10Q8WWZ4 1543 aa26.59■■□□□ 1.85
RFTN1-209ENST00000483671 CSRNP3Q8WYN3 585 aa26.57■■□□□ 1.84
RFTN1-209ENST00000483671 CUX2O14529 1486 aa26.53■■□□□ 1.84
RFTN1-209ENST00000483671 RAD54L2Q9Y4B4 1467 aa26.53■■□□□ 1.84
RFTN1-209ENST00000483671 WDR97A6NE52 1622 aa26.5■■□□□ 1.83
RFTN1-209ENST00000483671 TARBP1Q13395 1621 aaKnown RBP26.48■■□□□ 1.83
RFTN1-209ENST00000483671 LOC105371045A0A1W2PR82 267 aa26.45■■□□□ 1.83
RFTN1-209ENST00000483671 KIF21BO75037 1637 aa26.44■■□□□ 1.82
RFTN1-209ENST00000483671 IFT140Q96RY7 1462 aa26.43■■□□□ 1.82
RFTN1-209ENST00000483671 PRXQ9BXM0 1461 aa26.39■■□□□ 1.82
RFTN1-209ENST00000483671 ABCA5Q8WWZ7 1642 aa26.38■■□□□ 1.81
RFTN1-209ENST00000483671 IGF1RP08069 1367 aa26.38■■□□□ 1.81
RFTN1-209ENST00000483671 GOLGA3Q08378 1498 aa26.35■■□□□ 1.81
RFTN1-209ENST00000483671 ERICH3Q5RHP9 1530 aa26.33■■□□□ 1.81
RFTN1-209ENST00000483671 GAPVD1Q14C86 1478 aa26.3■■□□□ 1.8
RFTN1-209ENST00000483671 TDRD9Q8NDG6 1382 aaKnown RBP26.29■■□□□ 1.8
RFTN1-209ENST00000483671 RAPGEF2Q9Y4G8 1499 aa26.24■■□□□ 1.79
RFTN1-209ENST00000483671 TNIKQ9UKE5 1360 aa26.24■■□□□ 1.79
RFTN1-209ENST00000483671 CUL7Q14999 1698 aa26.22■■□□□ 1.79
RFTN1-209ENST00000483671 CARMIL1Q5VZK9 1371 aa26.22■■□□□ 1.79
RFTN1-209ENST00000483671 ZNF608Q9ULD9 1512 aaPredicted RBP26.2■■□□□ 1.78
RFTN1-209ENST00000483671 AQRO60306 1485 aaKnown RBP eCLIP26.16■■□□□ 1.78
RFTN1-209ENST00000483671 GRIN2BQ13224 1484 aa26.16■■□□□ 1.78
RFTN1-209ENST00000483671 PBRM1Q86U86 1689 aa26.14■■□□□ 1.78
RFTN1-209ENST00000483671 EIF4G3O43432 1585 aaKnown RBP26.13■■□□□ 1.77
RFTN1-209ENST00000483671 EHMT2Q96KQ7 1210 aa26.13■■□□□ 1.77
RFTN1-209ENST00000483671 UBTFP17480 764 aaKnown RBP26.11■■□□□ 1.77
RFTN1-209ENST00000483671 FHAD1B1AJZ9 1412 aa26.05■■□□□ 1.76
RFTN1-209ENST00000483671 ADAMTS12P58397 1594 aa26.04■■□□□ 1.76
RFTN1-209ENST00000483671 CEP162Q5TB80 1403 aa26.03■■□□□ 1.76
RFTN1-209ENST00000483671 MAGI1Q96QZ7 1491 aaPredicted RBP25.99■■□□□ 1.75
RFTN1-209ENST00000483671 SNAPC4Q5SXM2 1469 aa25.96■■□□□ 1.75
RFTN1-209ENST00000483671 CLIP1P30622 1438 aa25.89■■□□□ 1.74
RFTN1-209ENST00000483671 SYNJ2O15056 1496 aa25.88■■□□□ 1.73
RFTN1-209ENST00000483671 CTTNBP2Q8WZ74 1663 aa25.84■■□□□ 1.73
RFTN1-209ENST00000483671 GRIN2AQ12879 1464 aa25.83■■□□□ 1.73
RFTN1-209ENST00000483671 CHMP7Q8WUX9 453 aaPredicted RBP25.72■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms