RNA–Protein interactions for RNA: ENST00000483631.1

HPS4-213, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 737 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-213ENST00000483631 NISCHQ9Y2I1 1504 aa49.37■■■■■ 5.49
HPS4-213ENST00000483631 CCDC180Q9P1Z9 1646 aa44.25■■■■■ 4.67
HPS4-213ENST00000483631 ABCC9O60706 1549 aa43.73■■■■■ 4.59
HPS4-213ENST00000483631 RB1CC1Q8TDY2 1594 aa41.92■■■■■ 4.3
HPS4-213ENST00000483631 NACADO15069 1562 aa41.75■■■■■ 4.27
HPS4-213ENST00000483631 MYO15BQ96JP2 1530 aa41.37■■■■■ 4.21
HPS4-213ENST00000483631 DCAF8L2P0C7V8 631 aa41.32■■■■■ 4.21
HPS4-213ENST00000483631 ZCCHC6Q5VYS8 1495 aaKnown RBP41■■■■■ 4.15
HPS4-213ENST00000483631 UNC13AQ9UPW8 1703 aa40.93■■■■■ 4.14
HPS4-213ENST00000483631 DCAF1Q9Y4B6 1507 aa40.93■■■■■ 4.14
HPS4-213ENST00000483631 PABPN1Q86U42 306 aaKnown RBP eCLIP40.7■■■■■ 4.11
HPS4-213ENST00000483631 DNAJC5BQ9UF47 199 aa40.68■■■■■ 4.1
HPS4-213ENST00000483631 BICRAQ9NZM4 1560 aa40.63■■■■■ 4.09
HPS4-213ENST00000483631 SHROOM4Q9ULL8 1493 aa40.3■■■■■ 4.04
HPS4-213ENST00000483631 SCRIBQ14160 1630 aa40.17■■■■■ 4.02
HPS4-213ENST00000483631 EIF4G1Q04637 1599 aaKnown RBP39.62■■■■□ 3.93
HPS4-213ENST00000483631 CC2D2AQ9P2K1 1620 aa39.59■■■■□ 3.93
HPS4-213ENST00000483631 CECR2Q9BXF3 1484 aa39.42■■■■□ 3.9
HPS4-213ENST00000483631 NCAPD3P42695 1498 aa38.51■■■■□ 3.76
HPS4-213ENST00000483631 SMARCA4P51532 1647 aa38.44■■■■□ 3.74
HPS4-213ENST00000483631 ATAD2BQ9ULI0 1458 aa38.39■■■■□ 3.74
HPS4-213ENST00000483631 SMARCA2P51531 1590 aa38.36■■■■□ 3.73
HPS4-213ENST00000483631 BAZ1AQ9NRL2 1556 aaPredicted RBP38.34■■■■□ 3.73
HPS4-213ENST00000483631 HMGXB3Q12766 1538 aa38.28■■■■□ 3.72
HPS4-213ENST00000483631 PEG3Q9GZU2 1588 aa38.15■■■■□ 3.7
HPS4-213ENST00000483631 BAZ1BQ9UIG0 1483 aaKnown RBP38.03■■■■□ 3.68
HPS4-213ENST00000483631 MROH2BQ7Z745 1585 aa37.97■■■■□ 3.67
HPS4-213ENST00000483631 ERCC6Q03468 1493 aa37.78■■■■□ 3.64
HPS4-213ENST00000483631 CUX2O14529 1486 aa37.71■■■■□ 3.63
HPS4-213ENST00000483631 NESP48681 1621 aa37.65■■■■□ 3.62
HPS4-213ENST00000483631 LAMC3Q9Y6N6 1575 aa37.6■■■■□ 3.61
HPS4-213ENST00000483631 WIZO95785 1651 aa37.53■■■■□ 3.6
HPS4-213ENST00000483631 DNAJC5Q9H3Z4 198 aa37.49■■■■□ 3.59
HPS4-213ENST00000483631 PDS5BQ9NTI5 1447 aa37.35■■■■□ 3.57
HPS4-213ENST00000483631 RSF1Q96T23 1441 aaPredicted RBP37.34■■■■□ 3.57
HPS4-213ENST00000483631 CADPSQ9ULU8 1353 aa37.31■■■■□ 3.56
HPS4-213ENST00000483631 THOC2Q8NI27 1593 aaKnown RBP37.31■■■■□ 3.56
HPS4-213ENST00000483631 KIF21AQ7Z4S6 1674 aa37.25■■■■□ 3.55
HPS4-213ENST00000483631 TOP2AP11388 1531 aaKnown RBP37.15■■■■□ 3.54
HPS4-213ENST00000483631 CFTRP13569 1480 aa36.98■■■■□ 3.51
HPS4-213ENST00000483631 MRC2Q9UBG0 1479 aa36.98■■■■□ 3.51
HPS4-213ENST00000483631 WDR62O43379 1518 aa36.9■■■■□ 3.5
HPS4-213ENST00000483631 CEP164Q9UPV0 1460 aa36.89■■■■□ 3.5
HPS4-213ENST00000483631 FANCD2Q9BXW9 1451 aa36.87■■■■□ 3.49
HPS4-213ENST00000483631 PRDM2Q13029 1718 aa36.71■■■■□ 3.47
HPS4-213ENST00000483631 CCDC88BA6NC98 1476 aa36.68■■■■□ 3.46
HPS4-213ENST00000483631 URB2Q14146 1524 aaKnown RBP36.52■■■■□ 3.44
HPS4-213ENST00000483631 ABCC8Q09428 1581 aa36.26■■■■□ 3.39
HPS4-213ENST00000483631 TOPBP1Q92547 1522 aa36.21■■■■□ 3.39
HPS4-213ENST00000483631 IFT140Q96RY7 1462 aa36.18■■■■□ 3.38
HPS4-213ENST00000483631 DNMBPQ6XZF7 1577 aa36.14■■■■□ 3.38
HPS4-213ENST00000483631 ZNF608Q9ULD9 1512 aaPredicted RBP35.98■■■■□ 3.35
HPS4-213ENST00000483631 OSCARQ8IYS5 282 aa35.97■■■■□ 3.35
HPS4-213ENST00000483631 TARBP1Q13395 1621 aaKnown RBP35.89■■■■□ 3.34
HPS4-213ENST00000483631 POLA1P09884 1462 aaPredicted RBP35.86■■■■□ 3.33
HPS4-213ENST00000483631 EIF4G3O43432 1585 aaKnown RBP35.85■■■■□ 3.33
HPS4-213ENST00000483631 SUPT5HO00267 1087 aaKnown RBP35.77■■■■□ 3.32
HPS4-213ENST00000483631 AQRO60306 1485 aaKnown RBP eCLIP35.68■■■■□ 3.31e-6■■■■□ 21.6
HPS4-213ENST00000483631 SOGA1O94964 1423 aa35.68■■■■□ 3.3
HPS4-213ENST00000483631 WDR97A6NE52 1622 aa35.68■■■■□ 3.3
HPS4-213ENST00000483631 CUX1P39880 1505 aa35.67■■■■□ 3.3
HPS4-213ENST00000483631 FGD5Q6ZNL6 1462 aa35.66■■■■□ 3.3
HPS4-213ENST00000483631 RAD54L2Q9Y4B4 1467 aa35.65■■■■□ 3.3
HPS4-213ENST00000483631 TRIM41Q8WV44 630 aa35.59■■■■□ 3.29
HPS4-213ENST00000483631 CHD1O14646 1710 aa35.52■■■■□ 3.28
HPS4-213ENST00000483631 TDRD9Q8NDG6 1382 aaKnown RBP35.51■■■■□ 3.28
HPS4-213ENST00000483631 RIMBP3CA6NJZ7 1639 aa35.45■■■■□ 3.27
HPS4-213ENST00000483631 RIMBP3BA6NNM3 1639 aa35.45■■■■□ 3.27
HPS4-213ENST00000483631 RIMBP3Q9UFD9 1639 aa35.45■■■■□ 3.27
HPS4-213ENST00000483631 ARHGEF11O15085 1522 aa35.39■■■■□ 3.26
HPS4-213ENST00000483631 GRIN2BQ13224 1484 aa35.38■■■■□ 3.25
HPS4-213ENST00000483631 MAGI1Q96QZ7 1491 aaPredicted RBP35.38■■■■□ 3.25
HPS4-213ENST00000483631 SNAPC4Q5SXM2 1469 aa35.36■■■■□ 3.25
HPS4-213ENST00000483631 ABCA10Q8WWZ4 1543 aa35.34■■■■□ 3.25
HPS4-213ENST00000483631 FBLN2P98095 1184 aa35.33■■■■□ 3.25
HPS4-213ENST00000483631 GAPVD1Q14C86 1478 aa35.28■■■■□ 3.24
HPS4-213ENST00000483631 BIVM-ERCC5R4GMW8 1640 aa35.27■■■■□ 3.24
HPS4-213ENST00000483631 PBRM1Q86U86 1689 aa35.26■■■■□ 3.23
HPS4-213ENST00000483631 TOP2BQ02880 1626 aa35.25■■■■□ 3.23
HPS4-213ENST00000483631 ABCA5Q8WWZ7 1642 aa35.24■■■■□ 3.23
HPS4-213ENST00000483631 WRNQ14191 1432 aaPredicted RBP eCLIP35.24■■■■□ 3.23
HPS4-213ENST00000483631 SYNJ2O15056 1496 aa35.23■■■■□ 3.23
HPS4-213ENST00000483631 CHMP7Q8WUX9 453 aaPredicted RBP35.21■■■■□ 3.23
HPS4-213ENST00000483631 SYNJ1O43426 1573 aa35.19■■■■□ 3.22
HPS4-213ENST00000483631 CLASP1Q7Z460 1538 aa35.16■■■■□ 3.22
HPS4-213ENST00000483631 ARAP1Q96P48 1450 aa35.04■■■■□ 3.2
HPS4-213ENST00000483631 CYB5RLQ6IPT4 315 aa35.02■■■■□ 3.2
HPS4-213ENST00000483631 ADAMTS12P58397 1594 aa34.94■■■■□ 3.18
HPS4-213ENST00000483631 ERICH3Q5RHP9 1530 aa34.93■■■■□ 3.18
HPS4-213ENST00000483631 GRIN2AQ12879 1464 aa34.91■■■■□ 3.18
HPS4-213ENST00000483631 FHAD1B1AJZ9 1412 aa34.87■■■■□ 3.17
HPS4-213ENST00000483631 NUP160Q12769 1436 aa34.81■■■■□ 3.16
HPS4-213ENST00000483631 CEP170Q5SW79 1584 aa34.74■■■■□ 3.15
HPS4-213ENST00000483631 SHROOM2Q13796 1616 aa34.64■■■■□ 3.14
HPS4-213ENST00000483631 KIF27Q86VH2 1401 aa34.56■■■■□ 3.12
HPS4-213ENST00000483631 ERCC6L2Q5T890 1561 aa34.53■■■■□ 3.12
HPS4-213ENST00000483631 TRHP20396 242 aaPredicted RBP34.5■■■■□ 3.11
HPS4-213ENST00000483631 CUL7Q14999 1698 aa34.49■■■■□ 3.11
HPS4-213ENST00000483631 IGF1RP08069 1367 aa34.48■■■■□ 3.11
HPS4-213ENST00000483631 RUSC2Q8N2Y8 1516 aa34.44■■■■□ 3.1
Retrieved 100 of 20,778 RNA–protein pairs in 162.8 ms