RNA–Protein interactions for RNA: ENST00000483617.5

PTPN18-212, Transcript of protein tyrosine phosphatase, non-receptor type 18, humanhuman

TSL 3

Gene PTPN18, Length 595 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN18-212ENST00000483617 NISCHQ9Y2I1 1504 aa27.36■■□□□ 1.97
PTPN18-212ENST00000483617 CCDC180Q9P1Z9 1646 aa24.5■■□□□ 1.51
PTPN18-212ENST00000483617 ABCC9O60706 1549 aa24.27■■□□□ 1.48
PTPN18-212ENST00000483617 RB1CC1Q8TDY2 1594 aa23.22■■□□□ 1.31
PTPN18-212ENST00000483617 NACADO15069 1562 aa23.1■■□□□ 1.29
PTPN18-212ENST00000483617 DCAF8L2P0C7V8 631 aa22.92■■□□□ 1.26
PTPN18-212ENST00000483617 MYO15BQ96JP2 1530 aa22.86■■□□□ 1.25
PTPN18-212ENST00000483617 ZCCHC6Q5VYS8 1495 aaKnown RBP22.74■■□□□ 1.23
PTPN18-212ENST00000483617 UNC13AQ9UPW8 1703 aa22.68■■□□□ 1.22
PTPN18-212ENST00000483617 DCAF1Q9Y4B6 1507 aa22.64■■□□□ 1.21
PTPN18-212ENST00000483617 PABPN1Q86U42 306 aaKnown RBP eCLIP22.59■■□□□ 1.21
PTPN18-212ENST00000483617 DNAJC5BQ9UF47 199 aa22.54■■□□□ 1.2
PTPN18-212ENST00000483617 BICRAQ9NZM4 1560 aa22.52■■□□□ 1.2
PTPN18-212ENST00000483617 SCRIBQ14160 1630 aa22.32■■□□□ 1.16
PTPN18-212ENST00000483617 SHROOM4Q9ULL8 1493 aa22.28■■□□□ 1.16
PTPN18-212ENST00000483617 EIF4G1Q04637 1599 aaKnown RBP21.96■■□□□ 1.11
PTPN18-212ENST00000483617 CC2D2AQ9P2K1 1620 aa21.95■■□□□ 1.1
PTPN18-212ENST00000483617 CECR2Q9BXF3 1484 aa21.85■■□□□ 1.09
PTPN18-212ENST00000483617 SMARCA4P51532 1647 aa21.32■■□□□ 1
PTPN18-212ENST00000483617 NCAPD3P42695 1498 aa21.31■■□□□ 1
PTPN18-212ENST00000483617 ATAD2BQ9ULI0 1458 aa21.27■■□□□ 1
PTPN18-212ENST00000483617 SMARCA2P51531 1590 aa21.24■□□□□ 0.99
PTPN18-212ENST00000483617 BAZ1AQ9NRL2 1556 aaPredicted RBP21.24■□□□□ 0.99
PTPN18-212ENST00000483617 HMGXB3Q12766 1538 aa21.2■□□□□ 0.98
PTPN18-212ENST00000483617 PEG3Q9GZU2 1588 aa21.12■□□□□ 0.97
PTPN18-212ENST00000483617 BAZ1BQ9UIG0 1483 aaKnown RBP21.09■□□□□ 0.97
PTPN18-212ENST00000483617 MROH2BQ7Z745 1585 aa21.07■□□□□ 0.96
PTPN18-212ENST00000483617 ERCC6Q03468 1493 aa20.95■□□□□ 0.94
PTPN18-212ENST00000483617 NESP48681 1621 aa20.9■□□□□ 0.94
PTPN18-212ENST00000483617 CUX2O14529 1486 aa20.87■□□□□ 0.93
PTPN18-212ENST00000483617 WIZO95785 1651 aa20.84■□□□□ 0.93
PTPN18-212ENST00000483617 LAMC3Q9Y6N6 1575 aa20.82■□□□□ 0.92
PTPN18-212ENST00000483617 RSF1Q96T23 1441 aaPredicted RBP20.7■□□□□ 0.9
PTPN18-212ENST00000483617 THOC2Q8NI27 1593 aaKnown RBP20.7■□□□□ 0.9
PTPN18-212ENST00000483617 PDS5BQ9NTI5 1447 aa20.68■□□□□ 0.9
PTPN18-212ENST00000483617 CADPSQ9ULU8 1353 aa20.66■□□□□ 0.9
PTPN18-212ENST00000483617 KIF21AQ7Z4S6 1674 aa20.66■□□□□ 0.9
PTPN18-212ENST00000483617 TOP2AP11388 1531 aaKnown RBP20.62■□□□□ 0.89
PTPN18-212ENST00000483617 DNAJC5Q9H3Z4 198 aa20.57■□□□□ 0.88
PTPN18-212ENST00000483617 MRC2Q9UBG0 1479 aa20.5■□□□□ 0.87
PTPN18-212ENST00000483617 CFTRP13569 1480 aa20.48■□□□□ 0.87
PTPN18-212ENST00000483617 CEP164Q9UPV0 1460 aa20.46■□□□□ 0.87
PTPN18-212ENST00000483617 WDR62O43379 1518 aa20.46■□□□□ 0.87
PTPN18-212ENST00000483617 FANCD2Q9BXW9 1451 aa20.44■□□□□ 0.86
PTPN18-212ENST00000483617 CCDC88BA6NC98 1476 aa20.35■□□□□ 0.85
PTPN18-212ENST00000483617 PRDM2Q13029 1718 aa20.33■□□□□ 0.84
PTPN18-212ENST00000483617 URB2Q14146 1524 aaKnown RBP20.26■□□□□ 0.83
PTPN18-212ENST00000483617 SUPT5HO00267 1087 aaKnown RBP20.08■□□□□ 0.81
PTPN18-212ENST00000483617 TOPBP1Q92547 1522 aa20.07■□□□□ 0.8
PTPN18-212ENST00000483617 ABCC8Q09428 1581 aa20.04■□□□□ 0.8
PTPN18-212ENST00000483617 IFT140Q96RY7 1462 aa20.04■□□□□ 0.8
PTPN18-212ENST00000483617 DNMBPQ6XZF7 1577 aa20.04■□□□□ 0.8
PTPN18-212ENST00000483617 ZNF608Q9ULD9 1512 aaPredicted RBP19.97■□□□□ 0.79
PTPN18-212ENST00000483617 EIF4G3O43432 1585 aaKnown RBP19.91■□□□□ 0.78
PTPN18-212ENST00000483617 POLA1P09884 1462 aaPredicted RBP19.89■□□□□ 0.77
PTPN18-212ENST00000483617 TARBP1Q13395 1621 aaKnown RBP19.89■□□□□ 0.77
PTPN18-212ENST00000483617 OSCARQ8IYS5 282 aa19.88■□□□□ 0.77
PTPN18-212ENST00000483617 CUX1P39880 1505 aa19.81■□□□□ 0.76
PTPN18-212ENST00000483617 AQRO60306 1485 aaKnown RBP eCLIP19.79■□□□□ 0.76
PTPN18-212ENST00000483617 FGD5Q6ZNL6 1462 aa19.79■□□□□ 0.76
PTPN18-212ENST00000483617 RAD54L2Q9Y4B4 1467 aa19.79■□□□□ 0.76
PTPN18-212ENST00000483617 SOGA1O94964 1423 aa19.77■□□□□ 0.76
PTPN18-212ENST00000483617 TRIM41Q8WV44 630 aa19.75■□□□□ 0.75
PTPN18-212ENST00000483617 WDR97A6NE52 1622 aa19.74■□□□□ 0.75
PTPN18-212ENST00000483617 CHD1O14646 1710 aa19.71■□□□□ 0.75
PTPN18-212ENST00000483617 TDRD9Q8NDG6 1382 aaKnown RBP19.7■□□□□ 0.74
PTPN18-212ENST00000483617 RIMBP3CA6NJZ7 1639 aa19.65■□□□□ 0.74
PTPN18-212ENST00000483617 RIMBP3BA6NNM3 1639 aa19.65■□□□□ 0.74
PTPN18-212ENST00000483617 RIMBP3Q9UFD9 1639 aa19.65■□□□□ 0.74
PTPN18-212ENST00000483617 SNAPC4Q5SXM2 1469 aa19.64■□□□□ 0.73
PTPN18-212ENST00000483617 ARHGEF11O15085 1522 aa19.62■□□□□ 0.73
PTPN18-212ENST00000483617 GRIN2BQ13224 1484 aa19.6■□□□□ 0.73
PTPN18-212ENST00000483617 FBLN2P98095 1184 aa19.6■□□□□ 0.73
PTPN18-212ENST00000483617 MAGI1Q96QZ7 1491 aaPredicted RBP19.6■□□□□ 0.73
PTPN18-212ENST00000483617 ABCA10Q8WWZ4 1543 aa19.58■□□□□ 0.73
PTPN18-212ENST00000483617 PBRM1Q86U86 1689 aa19.56■□□□□ 0.72
PTPN18-212ENST00000483617 GAPVD1Q14C86 1478 aa19.55■□□□□ 0.72
PTPN18-212ENST00000483617 ABCA5Q8WWZ7 1642 aa19.55■□□□□ 0.72
PTPN18-212ENST00000483617 BIVM-ERCC5R4GMW8 1640 aa19.55■□□□□ 0.72
PTPN18-212ENST00000483617 TOP2BQ02880 1626 aa19.54■□□□□ 0.72
PTPN18-212ENST00000483617 WRNQ14191 1432 aaPredicted RBP eCLIP19.54■□□□□ 0.72
PTPN18-212ENST00000483617 SYNJ1O43426 1573 aa19.53■□□□□ 0.72
PTPN18-212ENST00000483617 SYNJ2O15056 1496 aa19.52■□□□□ 0.72
PTPN18-212ENST00000483617 CHMP7Q8WUX9 453 aaPredicted RBP19.5■□□□□ 0.71
PTPN18-212ENST00000483617 CLASP1Q7Z460 1538 aa19.5■□□□□ 0.71
PTPN18-212ENST00000483617 ARAP1Q96P48 1450 aa19.44■□□□□ 0.7
PTPN18-212ENST00000483617 ADAMTS12P58397 1594 aa19.4■□□□□ 0.7
PTPN18-212ENST00000483617 CYB5RLQ6IPT4 315 aa19.4■□□□□ 0.7
PTPN18-212ENST00000483617 GRIN2AQ12879 1464 aa19.36■□□□□ 0.69
PTPN18-212ENST00000483617 ERICH3Q5RHP9 1530 aa19.35■□□□□ 0.69
PTPN18-212ENST00000483617 FHAD1B1AJZ9 1412 aa19.32■□□□□ 0.68
PTPN18-212ENST00000483617 CEP170Q5SW79 1584 aa19.29■□□□□ 0.68
PTPN18-212ENST00000483617 NUP160Q12769 1436 aa19.29■□□□□ 0.68
PTPN18-212ENST00000483617 SHROOM2Q13796 1616 aa19.19■□□□□ 0.66
PTPN18-212ENST00000483617 ERCC6L2Q5T890 1561 aa19.19■□□□□ 0.66
PTPN18-212ENST00000483617 KIF27Q86VH2 1401 aa19.16■□□□□ 0.66
PTPN18-212ENST00000483617 CUL7Q14999 1698 aa19.12■□□□□ 0.65
PTPN18-212ENST00000483617 RUSC2Q8N2Y8 1516 aa19.12■□□□□ 0.65
PTPN18-212ENST00000483617 TRHP20396 242 aaPredicted RBP19.12■□□□□ 0.65
PTPN18-212ENST00000483617 IGF1RP08069 1367 aa19.09■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms