RNA–Protein interactions for RNA: ENST00000483506.1

HDAC6-225, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-225ENST00000483506 NISCHQ9Y2I1 1504 aa44.04■■■■■ 4.64
HDAC6-225ENST00000483506 CCDC180Q9P1Z9 1646 aa39.23■■■■□ 3.87
HDAC6-225ENST00000483506 ABCC9O60706 1549 aa38.28■■■■□ 3.72
HDAC6-225ENST00000483506 RB1CC1Q8TDY2 1594 aa36.89■■■■□ 3.5
HDAC6-225ENST00000483506 NACADO15069 1562 aa36.87■■■■□ 3.49
HDAC6-225ENST00000483506 MYO15BQ96JP2 1530 aa36.71■■■■□ 3.47
HDAC6-225ENST00000483506 ZCCHC6Q5VYS8 1495 aaKnown RBP36.7■■■■□ 3.47
HDAC6-225ENST00000483506 DCAF8L2P0C7V8 631 aa36.57■■■■□ 3.44
HDAC6-225ENST00000483506 DCAF1Q9Y4B6 1507 aa36.52■■■■□ 3.44
HDAC6-225ENST00000483506 UNC13AQ9UPW8 1703 aa36.07■■■■□ 3.36
HDAC6-225ENST00000483506 BICRAQ9NZM4 1560 aa35.81■■■■□ 3.32
HDAC6-225ENST00000483506 PABPN1Q86U42 306 aaKnown RBP eCLIP35.71■■■■□ 3.31
HDAC6-225ENST00000483506 SCRIBQ14160 1630 aa35.68■■■■□ 3.3
HDAC6-225ENST00000483506 SHROOM4Q9ULL8 1493 aa35.5■■■■□ 3.27
HDAC6-225ENST00000483506 DNAJC5BQ9UF47 199 aa35.17■■■■□ 3.22
HDAC6-225ENST00000483506 EIF4G1Q04637 1599 aaKnown RBP34.83■■■■□ 3.17
HDAC6-225ENST00000483506 CC2D2AQ9P2K1 1620 aa34.69■■■■□ 3.14
HDAC6-225ENST00000483506 CECR2Q9BXF3 1484 aa34.44■■■■□ 3.1
HDAC6-225ENST00000483506 SMARCA4P51532 1647 aa34.19■■■■□ 3.06
HDAC6-225ENST00000483506 BAZ1AQ9NRL2 1556 aaPredicted RBP34.14■■■■□ 3.06
HDAC6-225ENST00000483506 NCAPD3P42695 1498 aa34.01■■■■□ 3.04
HDAC6-225ENST00000483506 ATAD2BQ9ULI0 1458 aa34■■■■□ 3.03
HDAC6-225ENST00000483506 SMARCA2P51531 1590 aa33.98■■■■□ 3.03
HDAC6-225ENST00000483506 PEG3Q9GZU2 1588 aa33.92■■■■□ 3.02
HDAC6-225ENST00000483506 MROH2BQ7Z745 1585 aa33.91■■■■□ 3.02
HDAC6-225ENST00000483506 HMGXB3Q12766 1538 aa33.87■■■■□ 3.01
HDAC6-225ENST00000483506 BAZ1BQ9UIG0 1483 aaKnown RBP33.69■■■□□ 2.98
HDAC6-225ENST00000483506 WIZO95785 1651 aa33.53■■■□□ 2.96
HDAC6-225ENST00000483506 RSF1Q96T23 1441 aaPredicted RBP33.52■■■□□ 2.96
HDAC6-225ENST00000483506 TOP2AP11388 1531 aaKnown RBP33.22■■■□□ 2.91
HDAC6-225ENST00000483506 NESP48681 1621 aa33.13■■■□□ 2.89
HDAC6-225ENST00000483506 LAMC3Q9Y6N6 1575 aa33.12■■■□□ 2.89
HDAC6-225ENST00000483506 ERCC6Q03468 1493 aa32.99■■■□□ 2.87
HDAC6-225ENST00000483506 CADPSQ9ULU8 1353 aa32.98■■■□□ 2.87
HDAC6-225ENST00000483506 PDS5BQ9NTI5 1447 aa32.85■■■□□ 2.85
HDAC6-225ENST00000483506 CFTRP13569 1480 aa32.81■■■□□ 2.84
HDAC6-225ENST00000483506 CCDC88BA6NC98 1476 aa32.79■■■□□ 2.84
HDAC6-225ENST00000483506 KIF21AQ7Z4S6 1674 aa32.78■■■□□ 2.84
HDAC6-225ENST00000483506 CUX2O14529 1486 aa32.76■■■□□ 2.84
HDAC6-225ENST00000483506 THOC2Q8NI27 1593 aaKnown RBP32.73■■■□□ 2.83
HDAC6-225ENST00000483506 PRDM2Q13029 1718 aa32.6■■■□□ 2.81
HDAC6-225ENST00000483506 FANCD2Q9BXW9 1451 aa32.59■■■□□ 2.81
HDAC6-225ENST00000483506 CEP164Q9UPV0 1460 aa32.55■■■□□ 2.8
HDAC6-225ENST00000483506 MRC2Q9UBG0 1479 aa32.54■■■□□ 2.8
HDAC6-225ENST00000483506 WDR62O43379 1518 aa32.47■■■□□ 2.79
HDAC6-225ENST00000483506 SUPT5HO00267 1087 aaKnown RBP32.46■■■□□ 2.79
HDAC6-225ENST00000483506 URB2Q14146 1524 aaKnown RBP32.28■■■□□ 2.76
HDAC6-225ENST00000483506 ABCC8Q09428 1581 aa32.1■■■□□ 2.73
HDAC6-225ENST00000483506 TOPBP1Q92547 1522 aa32.08■■■□□ 2.73
HDAC6-225ENST00000483506 DNMBPQ6XZF7 1577 aa32.07■■■□□ 2.72
HDAC6-225ENST00000483506 IFT140Q96RY7 1462 aa31.9■■■□□ 2.7
HDAC6-225ENST00000483506 CUX1P39880 1505 aa31.83■■■□□ 2.69
HDAC6-225ENST00000483506 POLA1P09884 1462 aaPredicted RBP31.81■■■□□ 2.68
HDAC6-225ENST00000483506 TARBP1Q13395 1621 aaKnown RBP31.77■■■□□ 2.68
HDAC6-225ENST00000483506 DNAJC5Q9H3Z4 198 aa31.73■■■□□ 2.67
HDAC6-225ENST00000483506 ZNF608Q9ULD9 1512 aaPredicted RBP31.73■■■□□ 2.67
HDAC6-225ENST00000483506 FGD5Q6ZNL6 1462 aa31.71■■■□□ 2.67
HDAC6-225ENST00000483506 EIF4G3O43432 1585 aaKnown RBP31.64■■■□□ 2.65
HDAC6-225ENST00000483506 SOGA1O94964 1423 aa31.63■■■□□ 2.65
HDAC6-225ENST00000483506 RAD54L2Q9Y4B4 1467 aa31.62■■■□□ 2.65
HDAC6-225ENST00000483506 BIVM-ERCC5R4GMW8 1640 aa31.58■■■□□ 2.65
HDAC6-225ENST00000483506 WRNQ14191 1432 aaPredicted RBP eCLIP31.58■■■□□ 2.65
HDAC6-225ENST00000483506 WDR97A6NE52 1622 aa31.57■■■□□ 2.64
HDAC6-225ENST00000483506 TOP2BQ02880 1626 aa31.57■■■□□ 2.64
HDAC6-225ENST00000483506 SYNJ1O43426 1573 aa31.53■■■□□ 2.64
HDAC6-225ENST00000483506 AQRO60306 1485 aaKnown RBP eCLIP31.52■■■□□ 2.64
HDAC6-225ENST00000483506 ABCA10Q8WWZ4 1543 aa31.44■■■□□ 2.62
HDAC6-225ENST00000483506 TDRD9Q8NDG6 1382 aaKnown RBP31.43■■■□□ 2.62
HDAC6-225ENST00000483506 ABCA5Q8WWZ7 1642 aa31.34■■■□□ 2.61
HDAC6-225ENST00000483506 GRIN2BQ13224 1484 aa31.31■■■□□ 2.6
HDAC6-225ENST00000483506 OSCARQ8IYS5 282 aa31.3■■■□□ 2.6
HDAC6-225ENST00000483506 GAPVD1Q14C86 1478 aa31.29■■■□□ 2.6
HDAC6-225ENST00000483506 MAGI1Q96QZ7 1491 aaPredicted RBP31.26■■■□□ 2.59
HDAC6-225ENST00000483506 PBRM1Q86U86 1689 aa31.25■■■□□ 2.59
HDAC6-225ENST00000483506 SNAPC4Q5SXM2 1469 aa31.25■■■□□ 2.59
HDAC6-225ENST00000483506 CHD1O14646 1710 aa31.23■■■□□ 2.59
HDAC6-225ENST00000483506 SYNJ2O15056 1496 aa31.12■■■□□ 2.57
HDAC6-225ENST00000483506 ERICH3Q5RHP9 1530 aa31.07■■■□□ 2.56
HDAC6-225ENST00000483506 FBLN2P98095 1184 aa31.04■■■□□ 2.56
HDAC6-225ENST00000483506 ADAMTS12P58397 1594 aa31.03■■■□□ 2.56
HDAC6-225ENST00000483506 CHMP7Q8WUX9 453 aaPredicted RBP31.01■■■□□ 2.55
HDAC6-225ENST00000483506 FHAD1B1AJZ9 1412 aa30.94■■■□□ 2.54
HDAC6-225ENST00000483506 CLASP1Q7Z460 1538 aa30.93■■■□□ 2.54
HDAC6-225ENST00000483506 KIF27Q86VH2 1401 aa30.92■■■□□ 2.54
HDAC6-225ENST00000483506 GRIN2AQ12879 1464 aa30.91■■■□□ 2.54
HDAC6-225ENST00000483506 RIMBP3CA6NJZ7 1639 aa30.86■■■□□ 2.53
HDAC6-225ENST00000483506 RIMBP3BA6NNM3 1639 aa30.86■■■□□ 2.53
HDAC6-225ENST00000483506 RIMBP3Q9UFD9 1639 aa30.86■■■□□ 2.53
HDAC6-225ENST00000483506 ARHGEF11O15085 1522 aa30.85■■■□□ 2.53
HDAC6-225ENST00000483506 NUP160Q12769 1436 aa30.81■■■□□ 2.52
HDAC6-225ENST00000483506 IGF1RP08069 1367 aa30.8■■■□□ 2.52
HDAC6-225ENST00000483506 CUL7Q14999 1698 aa30.78■■■□□ 2.52
HDAC6-225ENST00000483506 CEP170Q5SW79 1584 aa30.76■■■□□ 2.52
HDAC6-225ENST00000483506 TRIM41Q8WV44 630 aa30.71■■■□□ 2.51
HDAC6-225ENST00000483506 SHROOM2Q13796 1616 aa30.61■■■□□ 2.49
HDAC6-225ENST00000483506 CARMIL1Q5VZK9 1371 aa30.6■■■□□ 2.49
HDAC6-225ENST00000483506 RUSC2Q8N2Y8 1516 aa30.6■■■□□ 2.49
HDAC6-225ENST00000483506 ARAP1Q96P48 1450 aa30.6■■■□□ 2.49
HDAC6-225ENST00000483506 KIAA0586Q9BVV6 1533 aa30.47■■■□□ 2.47
HDAC6-225ENST00000483506 CYB5RLQ6IPT4 315 aa30.46■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms