RNA–Protein interactions for RNA: ENST00000483448.1

SYPL1-206, Transcript of synaptophysin like 1, humanhuman

TSL 4

Gene SYPL1, Length 478 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYPL1-206ENST00000483448 NISCHQ9Y2I1 1504 aa52.93■■■■■ 6.06
SYPL1-206ENST00000483448 CCDC180Q9P1Z9 1646 aa47.21■■■■■ 5.15
SYPL1-206ENST00000483448 ABCC9O60706 1549 aa46.98■■■■■ 5.11
SYPL1-206ENST00000483448 RB1CC1Q8TDY2 1594 aa44.83■■■■■ 4.77
SYPL1-206ENST00000483448 DCAF8L2P0C7V8 631 aa44.81■■■■■ 4.76
SYPL1-206ENST00000483448 NACADO15069 1562 aa44.61■■■■■ 4.73
SYPL1-206ENST00000483448 MYO15BQ96JP2 1530 aa44.07■■■■■ 4.65
SYPL1-206ENST00000483448 ZCCHC6Q5VYS8 1495 aaKnown RBP43.91■■■■■ 4.62
SYPL1-206ENST00000483448 PABPN1Q86U42 306 aaKnown RBP eCLIP43.9■■■■■ 4.62
SYPL1-206ENST00000483448 UNC13AQ9UPW8 1703 aa43.7■■■■■ 4.59
SYPL1-206ENST00000483448 DNAJC5BQ9UF47 199 aa43.69■■■■■ 4.58
SYPL1-206ENST00000483448 DCAF1Q9Y4B6 1507 aa43.68■■■■■ 4.58
SYPL1-206ENST00000483448 BICRAQ9NZM4 1560 aa43.44■■■■■ 4.54
SYPL1-206ENST00000483448 SCRIBQ14160 1630 aa43.17■■■■■ 4.5
SYPL1-206ENST00000483448 SHROOM4Q9ULL8 1493 aa42.88■■■■■ 4.46
SYPL1-206ENST00000483448 EIF4G1Q04637 1599 aaKnown RBP42.38■■■■■ 4.37
SYPL1-206ENST00000483448 CC2D2AQ9P2K1 1620 aa42.37■■■■■ 4.37
SYPL1-206ENST00000483448 CECR2Q9BXF3 1484 aa42.25■■■■■ 4.35
SYPL1-206ENST00000483448 NCAPD3P42695 1498 aa41.2■■■■■ 4.19
SYPL1-206ENST00000483448 SMARCA4P51532 1647 aa41.17■■■■■ 4.18
SYPL1-206ENST00000483448 ATAD2BQ9ULI0 1458 aa41.15■■■■■ 4.18
SYPL1-206ENST00000483448 BAZ1AQ9NRL2 1556 aaPredicted RBP41.06■■■■■ 4.16
SYPL1-206ENST00000483448 SMARCA2P51531 1590 aa41.04■■■■■ 4.16
SYPL1-206ENST00000483448 HMGXB3Q12766 1538 aa40.88■■■■■ 4.13
SYPL1-206ENST00000483448 MROH2BQ7Z745 1585 aa40.81■■■■■ 4.12
SYPL1-206ENST00000483448 BAZ1BQ9UIG0 1483 aaKnown RBP40.8■■■■■ 4.12
SYPL1-206ENST00000483448 PEG3Q9GZU2 1588 aa40.7■■■■■ 4.11
SYPL1-206ENST00000483448 ERCC6Q03468 1493 aa40.57■■■■■ 4.08
SYPL1-206ENST00000483448 NESP48681 1621 aa40.45■■■■■ 4.07
SYPL1-206ENST00000483448 WIZO95785 1651 aa40.34■■■■■ 4.05
SYPL1-206ENST00000483448 CUX2O14529 1486 aa40.24■■■■■ 4.03
SYPL1-206ENST00000483448 LAMC3Q9Y6N6 1575 aa40.18■■■■■ 4.02
SYPL1-206ENST00000483448 RSF1Q96T23 1441 aaPredicted RBP40.15■■■■■ 4.02
SYPL1-206ENST00000483448 PDS5BQ9NTI5 1447 aa40.03■■■■■ 4
SYPL1-206ENST00000483448 CADPSQ9ULU8 1353 aa40.02■■■■■ 4
SYPL1-206ENST00000483448 KIF21AQ7Z4S6 1674 aa39.86■■■■□ 3.97
SYPL1-206ENST00000483448 TOP2AP11388 1531 aaKnown RBP39.84■■■■□ 3.97
SYPL1-206ENST00000483448 THOC2Q8NI27 1593 aaKnown RBP39.83■■■■□ 3.97
SYPL1-206ENST00000483448 DNAJC5Q9H3Z4 198 aa39.82■■■■□ 3.97
SYPL1-206ENST00000483448 CFTRP13569 1480 aa39.6■■■■□ 3.93
SYPL1-206ENST00000483448 MRC2Q9UBG0 1479 aa39.6■■■■□ 3.93
SYPL1-206ENST00000483448 FANCD2Q9BXW9 1451 aa39.56■■■■□ 3.92
SYPL1-206ENST00000483448 CEP164Q9UPV0 1460 aa39.56■■■■□ 3.92
SYPL1-206ENST00000483448 CCDC88BA6NC98 1476 aa39.44■■■■□ 3.9
SYPL1-206ENST00000483448 WDR62O43379 1518 aa39.42■■■■□ 3.9
SYPL1-206ENST00000483448 URB2Q14146 1524 aaKnown RBP39.16■■■■□ 3.86
SYPL1-206ENST00000483448 PRDM2Q13029 1718 aa39.13■■■■□ 3.85
SYPL1-206ENST00000483448 SUPT5HO00267 1087 aaKnown RBP38.91■■■■□ 3.82
SYPL1-206ENST00000483448 TOPBP1Q92547 1522 aa38.83■■■■□ 3.81
SYPL1-206ENST00000483448 ABCC8Q09428 1581 aa38.8■■■■□ 3.8
SYPL1-206ENST00000483448 IFT140Q96RY7 1462 aa38.74■■■■□ 3.79
SYPL1-206ENST00000483448 DNMBPQ6XZF7 1577 aa38.7■■■■□ 3.79
SYPL1-206ENST00000483448 ZNF608Q9ULD9 1512 aaPredicted RBP38.63■■■■□ 3.78
SYPL1-206ENST00000483448 OSCARQ8IYS5 282 aa38.63■■■■□ 3.77
SYPL1-206ENST00000483448 POLA1P09884 1462 aaPredicted RBP38.45■■■■□ 3.75
SYPL1-206ENST00000483448 AQRO60306 1485 aaKnown RBP eCLIP38.39■■■■□ 3.741e-6■■■□□ 14.8
SYPL1-206ENST00000483448 SOGA1O94964 1423 aa38.38■■■■□ 3.74
SYPL1-206ENST00000483448 TARBP1Q13395 1621 aaKnown RBP38.38■■■■□ 3.74
SYPL1-206ENST00000483448 TRIM41Q8WV44 630 aa38.38■■■■□ 3.73
SYPL1-206ENST00000483448 EIF4G3O43432 1585 aaKnown RBP38.38■■■■□ 3.73
SYPL1-206ENST00000483448 RAD54L2Q9Y4B4 1467 aa38.36■■■■□ 3.73
SYPL1-206ENST00000483448 CUX1P39880 1505 aa38.3■■■■□ 3.72
SYPL1-206ENST00000483448 FGD5Q6ZNL6 1462 aa38.29■■■■□ 3.72
SYPL1-206ENST00000483448 TDRD9Q8NDG6 1382 aaKnown RBP38.26■■■■□ 3.72
SYPL1-206ENST00000483448 FBLN2P98095 1184 aa38.21■■■■□ 3.71
SYPL1-206ENST00000483448 CHD1O14646 1710 aa38.01■■■■□ 3.68
SYPL1-206ENST00000483448 WDR97A6NE52 1622 aa38.01■■■■□ 3.67
SYPL1-206ENST00000483448 SNAPC4Q5SXM2 1469 aa37.97■■■■□ 3.67
SYPL1-206ENST00000483448 CHMP7Q8WUX9 453 aaPredicted RBP37.95■■■■□ 3.67
SYPL1-206ENST00000483448 GRIN2BQ13224 1484 aa37.95■■■■□ 3.67
SYPL1-206ENST00000483448 RIMBP3CA6NJZ7 1639 aa37.92■■■■□ 3.66
SYPL1-206ENST00000483448 RIMBP3BA6NNM3 1639 aa37.92■■■■□ 3.66
SYPL1-206ENST00000483448 RIMBP3Q9UFD9 1639 aa37.92■■■■□ 3.66
SYPL1-206ENST00000483448 WRNQ14191 1432 aaPredicted RBP eCLIP37.89■■■■□ 3.66
SYPL1-206ENST00000483448 GAPVD1Q14C86 1478 aa37.88■■■■□ 3.65
SYPL1-206ENST00000483448 MAGI1Q96QZ7 1491 aaPredicted RBP37.86■■■■□ 3.65
SYPL1-206ENST00000483448 ARHGEF11O15085 1522 aa37.86■■■■□ 3.65
SYPL1-206ENST00000483448 ABCA10Q8WWZ4 1543 aa37.86■■■■□ 3.65
SYPL1-206ENST00000483448 TOP2BQ02880 1626 aa37.79■■■■□ 3.64
SYPL1-206ENST00000483448 SYNJ1O43426 1573 aa37.76■■■■□ 3.64
SYPL1-206ENST00000483448 SYNJ2O15056 1496 aa37.75■■■■□ 3.63
SYPL1-206ENST00000483448 BIVM-ERCC5R4GMW8 1640 aa37.75■■■■□ 3.63
SYPL1-206ENST00000483448 PBRM1Q86U86 1689 aa37.73■■■■□ 3.63
SYPL1-206ENST00000483448 CYB5RLQ6IPT4 315 aa37.73■■■■□ 3.63
SYPL1-206ENST00000483448 ABCA5Q8WWZ7 1642 aa37.7■■■■□ 3.63
SYPL1-206ENST00000483448 CLASP1Q7Z460 1538 aa37.57■■■■□ 3.61
SYPL1-206ENST00000483448 ARAP1Q96P48 1450 aa37.52■■■■□ 3.6
SYPL1-206ENST00000483448 GRIN2AQ12879 1464 aa37.43■■■■□ 3.58
SYPL1-206ENST00000483448 FHAD1B1AJZ9 1412 aa37.42■■■■□ 3.58
SYPL1-206ENST00000483448 ADAMTS12P58397 1594 aa37.41■■■■□ 3.58
SYPL1-206ENST00000483448 ERICH3Q5RHP9 1530 aa37.39■■■■□ 3.58
SYPL1-206ENST00000483448 NUP160Q12769 1436 aa37.26■■■■□ 3.55
SYPL1-206ENST00000483448 CEP170Q5SW79 1584 aa37.24■■■■□ 3.55
SYPL1-206ENST00000483448 TRHP20396 242 aaPredicted RBP37.23■■■■□ 3.55
SYPL1-206ENST00000483448 KIF27Q86VH2 1401 aa37.17■■■■□ 3.54
SYPL1-206ENST00000483448 IGF1RP08069 1367 aa37.09■■■■□ 3.53
SYPL1-206ENST00000483448 ERCC6L2Q5T890 1561 aa37.07■■■■□ 3.52
SYPL1-206ENST00000483448 JPH4Q96JJ6 628 aa37.04■■■■□ 3.52
SYPL1-206ENST00000483448 SHROOM2Q13796 1616 aa36.98■■■■□ 3.51
SYPL1-206ENST00000483448 PRG4Q92954 1404 aaPredicted RBP36.96■■■■□ 3.51
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms