RNA–Protein interactions for RNA: ENST00000483414.1

LIMK1-205, Transcript of LIM domain kinase 1, humanhuman

TSL 1 (best)

Gene LIMK1, Length 3,374 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-205ENST00000483414 NISCHQ9Y2I1 1504 aa23.11■■□□□ 1.29
LIMK1-205ENST00000483414 CCDC180Q9P1Z9 1646 aa20.5■□□□□ 0.87
LIMK1-205ENST00000483414 ZCCHC6Q5VYS8 1495 aaKnown RBP19.4■□□□□ 0.7
LIMK1-205ENST00000483414 ABCC9O60706 1549 aa19.37■□□□□ 0.69
LIMK1-205ENST00000483414 DCAF1Q9Y4B6 1507 aa19.24■□□□□ 0.67
LIMK1-205ENST00000483414 MYO15BQ96JP2 1530 aa19.18■□□□□ 0.66
LIMK1-205ENST00000483414 NACADO15069 1562 aa19.05■□□□□ 0.64
LIMK1-205ENST00000483414 RB1CC1Q8TDY2 1594 aa18.93■□□□□ 0.62
LIMK1-205ENST00000483414 UNC13AQ9UPW8 1703 aa18.8■□□□□ 0.6
LIMK1-205ENST00000483414 DCAF8L2P0C7V8 631 aa18.59■□□□□ 0.57
LIMK1-205ENST00000483414 SCRIBQ14160 1630 aa18.58■□□□□ 0.56
LIMK1-205ENST00000483414 BICRAQ9NZM4 1560 aa18.53■□□□□ 0.56
LIMK1-205ENST00000483414 SHROOM4Q9ULL8 1493 aa18.28■□□□□ 0.52
LIMK1-205ENST00000483414 PABPN1Q86U42 306 aaKnown RBP eCLIP18.05■□□□□ 0.48
LIMK1-205ENST00000483414 CECR2Q9BXF3 1484 aa17.93■□□□□ 0.46
LIMK1-205ENST00000483414 SMARCA4P51532 1647 aa17.89■□□□□ 0.46
LIMK1-205ENST00000483414 EIF4G1Q04637 1599 aaKnown RBP17.88■□□□□ 0.45
LIMK1-205ENST00000483414 BAZ1AQ9NRL2 1556 aaPredicted RBP17.84■□□□□ 0.45
LIMK1-205ENST00000483414 MROH2BQ7Z745 1585 aa17.82■□□□□ 0.44
LIMK1-205ENST00000483414 PEG3Q9GZU2 1588 aa17.81■□□□□ 0.44
LIMK1-205ENST00000483414 RSF1Q96T23 1441 aaPredicted RBP17.72■□□□□ 0.43
LIMK1-205ENST00000483414 CC2D2AQ9P2K1 1620 aa17.71■□□□□ 0.43
LIMK1-205ENST00000483414 WIZO95785 1651 aa17.69■□□□□ 0.42
LIMK1-205ENST00000483414 ATAD2BQ9ULI0 1458 aa17.61■□□□□ 0.41
LIMK1-205ENST00000483414 SMARCA2P51531 1590 aa17.59■□□□□ 0.41
LIMK1-205ENST00000483414 HMGXB3Q12766 1538 aa17.57■□□□□ 0.4
LIMK1-205ENST00000483414 NCAPD3P42695 1498 aa17.55■□□□□ 0.4
LIMK1-205ENST00000483414 TOP2AP11388 1531 aaKnown RBP17.5■□□□□ 0.39
LIMK1-205ENST00000483414 DNAJC5BQ9UF47 199 aa17.47■□□□□ 0.39
LIMK1-205ENST00000483414 BAZ1BQ9UIG0 1483 aaKnown RBP17.4■□□□□ 0.38
LIMK1-205ENST00000483414 CCDC88BA6NC98 1476 aa17.23■□□□□ 0.35
LIMK1-205ENST00000483414 SUPT5HO00267 1087 aaKnown RBP17.2■□□□□ 0.34
LIMK1-205ENST00000483414 PRDM2Q13029 1718 aa17.18■□□□□ 0.34
LIMK1-205ENST00000483414 CFTRP13569 1480 aa17.06■□□□□ 0.32
LIMK1-205ENST00000483414 LAMC3Q9Y6N6 1575 aa17.05■□□□□ 0.32
LIMK1-205ENST00000483414 NESP48681 1621 aa16.98■□□□□ 0.31
LIMK1-205ENST00000483414 CADPSQ9ULU8 1353 aa16.96■□□□□ 0.31
LIMK1-205ENST00000483414 KIF21AQ7Z4S6 1674 aa16.94■□□□□ 0.3
LIMK1-205ENST00000483414 THOC2Q8NI27 1593 aaKnown RBP16.81■□□□□ 0.28
LIMK1-205ENST00000483414 FANCD2Q9BXW9 1451 aa16.79■□□□□ 0.28
LIMK1-205ENST00000483414 BIVM-ERCC5R4GMW8 1640 aa16.76■□□□□ 0.27
LIMK1-205ENST00000483414 ABCC8Q09428 1581 aa16.74■□□□□ 0.27
LIMK1-205ENST00000483414 PDS5BQ9NTI5 1447 aa16.74■□□□□ 0.27
LIMK1-205ENST00000483414 SYNJ1O43426 1573 aa16.72■□□□□ 0.27
LIMK1-205ENST00000483414 CEP164Q9UPV0 1460 aa16.71■□□□□ 0.27
LIMK1-205ENST00000483414 WDR62O43379 1518 aa16.71■□□□□ 0.27
LIMK1-205ENST00000483414 CUX1P39880 1505 aa16.71■□□□□ 0.27
LIMK1-205ENST00000483414 URB2Q14146 1524 aaKnown RBP16.7■□□□□ 0.26
LIMK1-205ENST00000483414 TOP2BQ02880 1626 aa16.7■□□□□ 0.26
LIMK1-205ENST00000483414 DNMBPQ6XZF7 1577 aa16.68■□□□□ 0.26
LIMK1-205ENST00000483414 MRC2Q9UBG0 1479 aa16.64■□□□□ 0.26
LIMK1-205ENST00000483414 TOPBP1Q92547 1522 aa16.63■□□□□ 0.25
LIMK1-205ENST00000483414 WDR97A6NE52 1622 aa16.61■□□□□ 0.25
LIMK1-205ENST00000483414 WRNQ14191 1432 aaPredicted RBP eCLIP16.59■□□□□ 0.25
LIMK1-205ENST00000483414 ERCC6Q03468 1493 aa16.56■□□□□ 0.24
LIMK1-205ENST00000483414 TARBP1Q13395 1621 aaKnown RBP16.55■□□□□ 0.24
LIMK1-205ENST00000483414 CUX2O14529 1486 aa16.52■□□□□ 0.24
LIMK1-205ENST00000483414 POLA1P09884 1462 aaPredicted RBP16.51■□□□□ 0.23
LIMK1-205ENST00000483414 FGD5Q6ZNL6 1462 aa16.5■□□□□ 0.23
LIMK1-205ENST00000483414 CHIC1Q5VXU3 224 aa16.47■□□□□ 0.23
LIMK1-205ENST00000483414 ABCA5Q8WWZ7 1642 aa16.43■□□□□ 0.22
LIMK1-205ENST00000483414 ABCA10Q8WWZ4 1543 aa16.41■□□□□ 0.22
LIMK1-205ENST00000483414 RAD54L2Q9Y4B4 1467 aa16.38■□□□□ 0.21
LIMK1-205ENST00000483414 IFT140Q96RY7 1462 aa16.37■□□□□ 0.21
LIMK1-205ENST00000483414 EIF4G3O43432 1585 aaKnown RBP16.34■□□□□ 0.21
LIMK1-205ENST00000483414 PBRM1Q86U86 1689 aa16.34■□□□□ 0.21
LIMK1-205ENST00000483414 SOGA1O94964 1423 aa16.32■□□□□ 0.2
LIMK1-205ENST00000483414 ZNF608Q9ULD9 1512 aaPredicted RBP16.31■□□□□ 0.2
LIMK1-205ENST00000483414 RUSC2Q8N2Y8 1516 aa16.29■□□□□ 0.2
LIMK1-205ENST00000483414 TRIM41Q8WV44 630 aa16.25■□□□□ 0.19
LIMK1-205ENST00000483414 ERICH3Q5RHP9 1530 aa16.23■□□□□ 0.19
LIMK1-205ENST00000483414 GAPVD1Q14C86 1478 aa16.19■□□□□ 0.18
LIMK1-205ENST00000483414 CUL7Q14999 1698 aa16.19■□□□□ 0.18
LIMK1-205ENST00000483414 AQRO60306 1485 aaKnown RBP eCLIP16.18■□□□□ 0.182e-6■■■■■ 28.2
LIMK1-205ENST00000483414 ADAMTS12P58397 1594 aa16.18■□□□□ 0.18
LIMK1-205ENST00000483414 KIF27Q86VH2 1401 aa16.17■□□□□ 0.18
LIMK1-205ENST00000483414 EEA1Q15075 1411 aa16.16■□□□□ 0.18
LIMK1-205ENST00000483414 TDRD9Q8NDG6 1382 aaKnown RBP16.15■□□□□ 0.18
LIMK1-205ENST00000483414 KIF21BO75037 1637 aa16.14■□□□□ 0.17
LIMK1-205ENST00000483414 GRIN2BQ13224 1484 aa16.13■□□□□ 0.17
LIMK1-205ENST00000483414 IGF1RP08069 1367 aa16.13■□□□□ 0.17
LIMK1-205ENST00000483414 PRXQ9BXM0 1461 aa16.13■□□□□ 0.17
LIMK1-205ENST00000483414 MAGI1Q96QZ7 1491 aaPredicted RBP16.1■□□□□ 0.17
LIMK1-205ENST00000483414 CHD1O14646 1710 aa16.09■□□□□ 0.17
LIMK1-205ENST00000483414 SNAPC4Q5SXM2 1469 aa16.08■□□□□ 0.17
LIMK1-205ENST00000483414 SYNJ2O15056 1496 aa16.02■□□□□ 0.15
LIMK1-205ENST00000483414 FHAD1B1AJZ9 1412 aa16.02■□□□□ 0.15
LIMK1-205ENST00000483414 CTTNBP2Q8WZ74 1663 aa16.01■□□□□ 0.15
LIMK1-205ENST00000483414 RAPGEF2Q9Y4G8 1499 aa15.99■□□□□ 0.15
LIMK1-205ENST00000483414 CEP170Q5SW79 1584 aa15.99■□□□□ 0.15
LIMK1-205ENST00000483414 GRIN2AQ12879 1464 aa15.98■□□□□ 0.15
LIMK1-205ENST00000483414 CSRNP3Q8WYN3 585 aa15.96■□□□□ 0.15
LIMK1-205ENST00000483414 CARMIL1Q5VZK9 1371 aa15.96■□□□□ 0.14
LIMK1-205ENST00000483414 NUP160Q12769 1436 aa15.94■□□□□ 0.14
LIMK1-205ENST00000483414 CLASP1Q7Z460 1538 aa15.93■□□□□ 0.14
LIMK1-205ENST00000483414 SHROOM2Q13796 1616 aa15.91■□□□□ 0.14
LIMK1-205ENST00000483414 GOLGA3Q08378 1498 aa15.91■□□□□ 0.14
LIMK1-205ENST00000483414 FAM9AQ8IZU1 332 aaPredicted RBP15.84■□□□□ 0.13
LIMK1-205ENST00000483414 SAMD9Q5K651 1589 aa15.83■□□□□ 0.13
LIMK1-205ENST00000483414 IQGAP2Q13576 1575 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms