RNA–Protein interactions for RNA: ENST00000483376.1

COL2A1-206, Transcript of collagen type II alpha 1 chain, humanhuman

TSL 5

Gene COL2A1, Length 641 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1-206ENST00000483376 NISCHQ9Y2I1 1504 aa39.5■■■■□ 3.91
COL2A1-206ENST00000483376 CCDC180Q9P1Z9 1646 aa35.09■■■■□ 3.21
COL2A1-206ENST00000483376 ABCC9O60706 1549 aa34.08■■■■□ 3.05
COL2A1-206ENST00000483376 NACADO15069 1562 aa32.98■■■□□ 2.87
COL2A1-206ENST00000483376 RB1CC1Q8TDY2 1594 aa32.95■■■□□ 2.86
COL2A1-206ENST00000483376 ZCCHC6Q5VYS8 1495 aaKnown RBP32.94■■■□□ 2.86
COL2A1-206ENST00000483376 MYO15BQ96JP2 1530 aa32.93■■■□□ 2.86
COL2A1-206ENST00000483376 DCAF1Q9Y4B6 1507 aa32.8■■■□□ 2.84
COL2A1-206ENST00000483376 DCAF8L2P0C7V8 631 aa32.71■■■□□ 2.83
COL2A1-206ENST00000483376 UNC13AQ9UPW8 1703 aa32.1■■■□□ 2.73
COL2A1-206ENST00000483376 BICRAQ9NZM4 1560 aa31.93■■■□□ 2.7
COL2A1-206ENST00000483376 SCRIBQ14160 1630 aa31.88■■■□□ 2.69
COL2A1-206ENST00000483376 PABPN1Q86U42 306 aaKnown RBP eCLIP31.82■■■□□ 2.68
COL2A1-206ENST00000483376 SHROOM4Q9ULL8 1493 aa31.78■■■□□ 2.68
COL2A1-206ENST00000483376 DNAJC5BQ9UF47 199 aa31.18■■■□□ 2.58
COL2A1-206ENST00000483376 EIF4G1Q04637 1599 aaKnown RBP31.08■■■□□ 2.57
COL2A1-206ENST00000483376 CC2D2AQ9P2K1 1620 aa30.88■■■□□ 2.53
COL2A1-206ENST00000483376 CECR2Q9BXF3 1484 aa30.68■■■□□ 2.5
COL2A1-206ENST00000483376 BAZ1AQ9NRL2 1556 aaPredicted RBP30.62■■■□□ 2.49
COL2A1-206ENST00000483376 SMARCA4P51532 1647 aa30.59■■■□□ 2.49
COL2A1-206ENST00000483376 NCAPD3P42695 1498 aa30.44■■■□□ 2.46
COL2A1-206ENST00000483376 ATAD2BQ9ULI0 1458 aa30.43■■■□□ 2.46
COL2A1-206ENST00000483376 SMARCA2P51531 1590 aa30.41■■■□□ 2.46
COL2A1-206ENST00000483376 PEG3Q9GZU2 1588 aa30.4■■■□□ 2.46
COL2A1-206ENST00000483376 MROH2BQ7Z745 1585 aa30.38■■■□□ 2.45
COL2A1-206ENST00000483376 HMGXB3Q12766 1538 aa30.3■■■□□ 2.44
COL2A1-206ENST00000483376 BAZ1BQ9UIG0 1483 aaKnown RBP30.14■■■□□ 2.42
COL2A1-206ENST00000483376 RSF1Q96T23 1441 aaPredicted RBP30.11■■■□□ 2.41
COL2A1-206ENST00000483376 WIZO95785 1651 aa30.01■■■□□ 2.4
COL2A1-206ENST00000483376 TOP2AP11388 1531 aaKnown RBP29.8■■■□□ 2.36
COL2A1-206ENST00000483376 LAMC3Q9Y6N6 1575 aa29.59■■■□□ 2.33
COL2A1-206ENST00000483376 NESP48681 1621 aa29.53■■■□□ 2.32
COL2A1-206ENST00000483376 CADPSQ9ULU8 1353 aa29.52■■■□□ 2.32
COL2A1-206ENST00000483376 CCDC88BA6NC98 1476 aa29.41■■■□□ 2.3
COL2A1-206ENST00000483376 CFTRP13569 1480 aa29.4■■■□□ 2.3
COL2A1-206ENST00000483376 ERCC6Q03468 1493 aa29.39■■■□□ 2.3
COL2A1-206ENST00000483376 PDS5BQ9NTI5 1447 aa29.38■■■□□ 2.29
COL2A1-206ENST00000483376 SUPT5HO00267 1087 aaKnown RBP29.25■■■□□ 2.27
COL2A1-206ENST00000483376 KIF21AQ7Z4S6 1674 aa29.18■■■□□ 2.26
COL2A1-206ENST00000483376 CUX2O14529 1486 aa29.16■■■□□ 2.26
COL2A1-206ENST00000483376 FANCD2Q9BXW9 1451 aa29.15■■■□□ 2.26
COL2A1-206ENST00000483376 THOC2Q8NI27 1593 aaKnown RBP29.13■■■□□ 2.25
COL2A1-206ENST00000483376 PRDM2Q13029 1718 aa29.11■■■□□ 2.25
COL2A1-206ENST00000483376 CEP164Q9UPV0 1460 aa29.1■■■□□ 2.25
COL2A1-206ENST00000483376 MRC2Q9UBG0 1479 aa29.05■■■□□ 2.24
COL2A1-206ENST00000483376 WDR62O43379 1518 aa28.98■■■□□ 2.23
COL2A1-206ENST00000483376 URB2Q14146 1524 aaKnown RBP28.84■■■□□ 2.21
COL2A1-206ENST00000483376 ABCC8Q09428 1581 aa28.78■■■□□ 2.2
COL2A1-206ENST00000483376 TOPBP1Q92547 1522 aa28.69■■■□□ 2.18
COL2A1-206ENST00000483376 DNMBPQ6XZF7 1577 aa28.68■■■□□ 2.18
COL2A1-206ENST00000483376 IFT140Q96RY7 1462 aa28.53■■■□□ 2.16
COL2A1-206ENST00000483376 CUX1P39880 1505 aa28.5■■■□□ 2.15
COL2A1-206ENST00000483376 POLA1P09884 1462 aaPredicted RBP28.46■■■□□ 2.15
COL2A1-206ENST00000483376 TARBP1Q13395 1621 aaKnown RBP28.39■■■□□ 2.13
COL2A1-206ENST00000483376 WRNQ14191 1432 aaPredicted RBP eCLIP28.38■■■□□ 2.13
COL2A1-206ENST00000483376 FGD5Q6ZNL6 1462 aa28.38■■■□□ 2.13
COL2A1-206ENST00000483376 SOGA1O94964 1423 aa28.33■■■□□ 2.13
COL2A1-206ENST00000483376 TOP2BQ02880 1626 aa28.32■■■□□ 2.12
COL2A1-206ENST00000483376 BIVM-ERCC5R4GMW8 1640 aa28.31■■■□□ 2.12
COL2A1-206ENST00000483376 ZNF608Q9ULD9 1512 aaPredicted RBP28.3■■■□□ 2.12
COL2A1-206ENST00000483376 WDR97A6NE52 1622 aa28.28■■■□□ 2.12
COL2A1-206ENST00000483376 RAD54L2Q9Y4B4 1467 aa28.27■■■□□ 2.12
COL2A1-206ENST00000483376 SYNJ1O43426 1573 aa28.26■■■□□ 2.11
COL2A1-206ENST00000483376 EIF4G3O43432 1585 aaKnown RBP28.21■■■□□ 2.11
COL2A1-206ENST00000483376 ABCA10Q8WWZ4 1543 aa28.18■■■□□ 2.1
COL2A1-206ENST00000483376 AQRO60306 1485 aaKnown RBP eCLIP28.15■■■□□ 2.1
COL2A1-206ENST00000483376 TDRD9Q8NDG6 1382 aaKnown RBP28.11■■■□□ 2.09
COL2A1-206ENST00000483376 DNAJC5Q9H3Z4 198 aa28.07■■■□□ 2.08
COL2A1-206ENST00000483376 ABCA5Q8WWZ7 1642 aa28.03■■■□□ 2.08
COL2A1-206ENST00000483376 GRIN2BQ13224 1484 aa28.02■■■□□ 2.08
COL2A1-206ENST00000483376 GAPVD1Q14C86 1478 aa28.02■■■□□ 2.08
COL2A1-206ENST00000483376 MAGI1Q96QZ7 1491 aaPredicted RBP27.96■■■□□ 2.07
COL2A1-206ENST00000483376 SNAPC4Q5SXM2 1469 aa27.91■■■□□ 2.06
COL2A1-206ENST00000483376 PBRM1Q86U86 1689 aa27.89■■■□□ 2.06
COL2A1-206ENST00000483376 OSCARQ8IYS5 282 aa27.89■■■□□ 2.06
COL2A1-206ENST00000483376 ERICH3Q5RHP9 1530 aa27.86■■■□□ 2.05
COL2A1-206ENST00000483376 SYNJ2O15056 1496 aa27.83■■■□□ 2.05
COL2A1-206ENST00000483376 KIF27Q86VH2 1401 aa27.79■■■□□ 2.04
COL2A1-206ENST00000483376 CHD1O14646 1710 aa27.78■■■□□ 2.04
COL2A1-206ENST00000483376 ADAMTS12P58397 1594 aa27.74■■■□□ 2.03
COL2A1-206ENST00000483376 CHMP7Q8WUX9 453 aaPredicted RBP27.73■■■□□ 2.03
COL2A1-206ENST00000483376 FHAD1B1AJZ9 1412 aa27.73■■■□□ 2.03
COL2A1-206ENST00000483376 FBLN2P98095 1184 aa27.7■■■□□ 2.02
COL2A1-206ENST00000483376 TRIM41Q8WV44 630 aa27.7■■■□□ 2.02
COL2A1-206ENST00000483376 IGF1RP08069 1367 aa27.67■■■□□ 2.02
COL2A1-206ENST00000483376 GRIN2AQ12879 1464 aa27.65■■■□□ 2.02
COL2A1-206ENST00000483376 CLASP1Q7Z460 1538 aa27.6■■■□□ 2.01
COL2A1-206ENST00000483376 CUL7Q14999 1698 aa27.59■■■□□ 2.01
COL2A1-206ENST00000483376 NUP160Q12769 1436 aa27.57■■■□□ 2
COL2A1-206ENST00000483376 CEP170Q5SW79 1584 aa27.48■■□□□ 1.99
COL2A1-206ENST00000483376 CARMIL1Q5VZK9 1371 aa27.48■■□□□ 1.99
COL2A1-206ENST00000483376 RUSC2Q8N2Y8 1516 aa27.47■■□□□ 1.99
COL2A1-206ENST00000483376 CHIC1Q5VXU3 224 aa27.46■■□□□ 1.99
COL2A1-206ENST00000483376 ARHGEF11O15085 1522 aa27.45■■□□□ 1.98
COL2A1-206ENST00000483376 RIMBP3CA6NJZ7 1639 aa27.4■■□□□ 1.98
COL2A1-206ENST00000483376 RIMBP3BA6NNM3 1639 aa27.4■■□□□ 1.98
COL2A1-206ENST00000483376 RIMBP3Q9UFD9 1639 aa27.4■■□□□ 1.98
COL2A1-206ENST00000483376 EEA1Q15075 1411 aa27.4■■□□□ 1.98
COL2A1-206ENST00000483376 RAPGEF2Q9Y4G8 1499 aa27.35■■□□□ 1.97
COL2A1-206ENST00000483376 SHROOM2Q13796 1616 aa27.33■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms