RNA–Protein interactions for RNA: ENST00000483062.5

SYN3-212, Transcript of synapsin III, humanhuman

TSL 3

Gene SYN3, Length 827 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYN3-212ENST00000483062 NISCHQ9Y2I1 1504 aa20.27■□□□□ 0.84
SYN3-212ENST00000483062 AEBP2Q6ZN18 517 aaPredicted RBP19.62■□□□□ 0.73
SYN3-212ENST00000483062 CHIC1Q5VXU3 224 aa18.8■□□□□ 0.6
SYN3-212ENST00000483062 ABCC9O60706 1549 aa18.74■□□□□ 0.59
SYN3-212ENST00000483062 CCDC180Q9P1Z9 1646 aa18.27■□□□□ 0.52
SYN3-212ENST00000483062 DNAJC5BQ9UF47 199 aa18.14■□□□□ 0.49
SYN3-212ENST00000483062 RB1CC1Q8TDY2 1594 aa17.63■□□□□ 0.41
SYN3-212ENST00000483062 NACADO15069 1562 aa17.45■□□□□ 0.38
SYN3-212ENST00000483062 PABPN1Q86U42 306 aaKnown RBP eCLIP17.44■□□□□ 0.38
SYN3-212ENST00000483062 BICRAQ9NZM4 1560 aa17.22■□□□□ 0.35
SYN3-212ENST00000483062 DCAF8L2P0C7V8 631 aa17.2■□□□□ 0.34
SYN3-212ENST00000483062 UNC13AQ9UPW8 1703 aa17.15■□□□□ 0.34
SYN3-212ENST00000483062 MYO15BQ96JP2 1530 aa17.15■□□□□ 0.34
SYN3-212ENST00000483062 CECR2Q9BXF3 1484 aa16.96■□□□□ 0.31
SYN3-212ENST00000483062 DNAJC5Q9H3Z4 198 aa16.95■□□□□ 0.3
SYN3-212ENST00000483062 SHROOM4Q9ULL8 1493 aa16.93■□□□□ 0.3
SYN3-212ENST00000483062 CC2D2AQ9P2K1 1620 aa16.9■□□□□ 0.3
SYN3-212ENST00000483062 EIF4G1Q04637 1599 aaKnown RBP16.78■□□□□ 0.28
SYN3-212ENST00000483062 DCAF1Q9Y4B6 1507 aa16.75■□□□□ 0.27
SYN3-212ENST00000483062 SENP3Q9H4L4 574 aaPredicted RBP16.74■□□□□ 0.27
SYN3-212ENST00000483062 ZCCHC6Q5VYS8 1495 aaKnown RBP16.71■□□□□ 0.27
SYN3-212ENST00000483062 SCRIBQ14160 1630 aa16.6■□□□□ 0.25
SYN3-212ENST00000483062 PHF23Q9BUL5 403 aaPredicted RBP16.53■□□□□ 0.24
SYN3-212ENST00000483062 CUX2O14529 1486 aa16.37■□□□□ 0.21
SYN3-212ENST00000483062 NCAPD3P42695 1498 aa16.2■□□□□ 0.18
SYN3-212ENST00000483062 ERCC6Q03468 1493 aa16.17■□□□□ 0.18
SYN3-212ENST00000483062 ATAD2BQ9ULI0 1458 aa16.05■□□□□ 0.16
SYN3-212ENST00000483062 NESP48681 1621 aa16.01■□□□□ 0.15
SYN3-212ENST00000483062 HMGXB3Q12766 1538 aa15.96■□□□□ 0.15
SYN3-212ENST00000483062 SMARCA2P51531 1590 aa15.92■□□□□ 0.14
SYN3-212ENST00000483062 THOC2Q8NI27 1593 aaKnown RBP15.9■□□□□ 0.14
SYN3-212ENST00000483062 TRIM41Q8WV44 630 aa15.88■□□□□ 0.13
SYN3-212ENST00000483062 SMARCA4P51532 1647 aa15.84■□□□□ 0.13
SYN3-212ENST00000483062 LAMC3Q9Y6N6 1575 aa15.79■□□□□ 0.12
SYN3-212ENST00000483062 BAZ1BQ9UIG0 1483 aaKnown RBP15.79■□□□□ 0.12
SYN3-212ENST00000483062 PEG3Q9GZU2 1588 aa15.77■□□□□ 0.11
SYN3-212ENST00000483062 PDS5BQ9NTI5 1447 aa15.76■□□□□ 0.11
SYN3-212ENST00000483062 BAZ1AQ9NRL2 1556 aaPredicted RBP15.71■□□□□ 0.11
SYN3-212ENST00000483062 KIF21AQ7Z4S6 1674 aa15.67■□□□□ 0.1
SYN3-212ENST00000483062 CADPSQ9ULU8 1353 aa15.66■□□□□ 0.1
SYN3-212ENST00000483062 FOXD1Q16676 465 aa15.64■□□□□ 0.09
SYN3-212ENST00000483062 MRC2Q9UBG0 1479 aa15.63■□□□□ 0.09
SYN3-212ENST00000483062 WDR62O43379 1518 aa15.61■□□□□ 0.09
SYN3-212ENST00000483062 MROH2BQ7Z745 1585 aa15.61■□□□□ 0.09
SYN3-212ENST00000483062 OSCARQ8IYS5 282 aa15.58■□□□□ 0.08
SYN3-212ENST00000483062 CEP164Q9UPV0 1460 aa15.46■□□□□ 0.06
SYN3-212ENST00000483062 FANCD2Q9BXW9 1451 aa15.43■□□□□ 0.06
SYN3-212ENST00000483062 CFTRP13569 1480 aa15.4■□□□□ 0.06
SYN3-212ENST00000483062 URB2Q14146 1524 aaKnown RBP15.36■□□□□ 0.05
SYN3-212ENST00000483062 RIMBP3CA6NJZ7 1639 aa15.33■□□□□ 0.04
SYN3-212ENST00000483062 RIMBP3BA6NNM3 1639 aa15.33■□□□□ 0.04
SYN3-212ENST00000483062 RIMBP3Q9UFD9 1639 aa15.33■□□□□ 0.04
SYN3-212ENST00000483062 WIZO95785 1651 aa15.32■□□□□ 0.04
SYN3-212ENST00000483062 ARHGEF11O15085 1522 aa15.28■□□□□ 0.04
SYN3-212ENST00000483062 ZNF608Q9ULD9 1512 aaPredicted RBP15.23■□□□□ 0.03
SYN3-212ENST00000483062 CYB5RLQ6IPT4 315 aa15.22■□□□□ 0.03
SYN3-212ENST00000483062 IFT140Q96RY7 1462 aa15.2■□□□□ 0.02
SYN3-212ENST00000483062 RSF1Q96T23 1441 aaPredicted RBP15.17■□□□□ 0.02
SYN3-212ENST00000483062 PLPPR3Q6T4P5 718 aa15.15■□□□□ 0.02
SYN3-212ENST00000483062 ARAP1Q96P48 1450 aa15.14■□□□□ 0.01
SYN3-212ENST00000483062 TOP2AP11388 1531 aaKnown RBP15.13■□□□□ 0.01
SYN3-212ENST00000483062 TRHP20396 242 aaPredicted RBP15.12■□□□□ 0.01
SYN3-212ENST00000483062 TOPBP1Q92547 1522 aa15.09■□□□□ 0.01
SYN3-212ENST00000483062 AQRO60306 1485 aaKnown RBP eCLIP15.04■□□□□ -0
SYN3-212ENST00000483062 EIF4G3O43432 1585 aaKnown RBP15.03■□□□□ -0
SYN3-212ENST00000483062 ABCC8Q09428 1581 aa15.02■□□□□ -0
SYN3-212ENST00000483062 CCDC88BA6NC98 1476 aa15.02■□□□□ -0
SYN3-212ENST00000483062 TARBP1Q13395 1621 aaKnown RBP14.99□□□□□ -0.01
SYN3-212ENST00000483062 PRDM2Q13029 1718 aa14.97□□□□□ -0.01
SYN3-212ENST00000483062 DNMBPQ6XZF7 1577 aa14.96□□□□□ -0.01
SYN3-212ENST00000483062 FBLN2P98095 1184 aa14.95□□□□□ -0.02
SYN3-212ENST00000483062 CHD1O14646 1710 aa14.95□□□□□ -0.02
SYN3-212ENST00000483062 POLA1P09884 1462 aaPredicted RBP14.93□□□□□ -0.02
SYN3-212ENST00000483062 CLASP1Q7Z460 1538 aa14.91□□□□□ -0.02
SYN3-212ENST00000483062 TDRD9Q8NDG6 1382 aaKnown RBP14.89□□□□□ -0.03
SYN3-212ENST00000483062 RAD54L2Q9Y4B4 1467 aa14.88□□□□□ -0.03
SYN3-212ENST00000483062 SOGA1O94964 1423 aa14.85□□□□□ -0.03
SYN3-212ENST00000483062 SNAPC4Q5SXM2 1469 aa14.83□□□□□ -0.03
SYN3-212ENST00000483062 CHMP7Q8WUX9 453 aaPredicted RBP14.82□□□□□ -0.04
SYN3-212ENST00000483062 MAGI1Q96QZ7 1491 aaPredicted RBP14.8□□□□□ -0.04
SYN3-212ENST00000483062 WDR97A6NE52 1622 aa14.78□□□□□ -0.04
SYN3-212ENST00000483062 SYNJ1O43426 1573 aa14.78□□□□□ -0.04
SYN3-212ENST00000483062 SYNJ2O15056 1496 aa14.76□□□□□ -0.05
SYN3-212ENST00000483062 GAPVD1Q14C86 1478 aa14.76□□□□□ -0.05
SYN3-212ENST00000483062 GRIN2BQ13224 1484 aa14.76□□□□□ -0.05
SYN3-212ENST00000483062 FGD5Q6ZNL6 1462 aa14.74□□□□□ -0.05
SYN3-212ENST00000483062 CUX1P39880 1505 aa14.68□□□□□ -0.06
SYN3-212ENST00000483062 MSH5O43196 834 aa14.67□□□□□ -0.06
SYN3-212ENST00000483062 PPP6R1Q9UPN7 881 aa14.66□□□□□ -0.06
SYN3-212ENST00000483062 ADRA2BP18089 450 aa14.64□□□□□ -0.07
SYN3-212ENST00000483062 ERCC6L2Q5T890 1561 aa14.63□□□□□ -0.07
SYN3-212ENST00000483062 POTEDQ86YR6 584 aa14.6□□□□□ -0.07
SYN3-212ENST00000483062 NUP160Q12769 1436 aa14.58□□□□□ -0.07
SYN3-212ENST00000483062 ABCA10Q8WWZ4 1543 aa14.58□□□□□ -0.08
SYN3-212ENST00000483062 PIAS4Q8N2W9 510 aaPredicted RBP14.57□□□□□ -0.08
SYN3-212ENST00000483062 GRIN2AQ12879 1464 aa14.57□□□□□ -0.08
SYN3-212ENST00000483062 CEP170Q5SW79 1584 aa14.55□□□□□ -0.08
SYN3-212ENST00000483062 ABCA5Q8WWZ7 1642 aa14.55□□□□□ -0.08
SYN3-212ENST00000483062 PBRM1Q86U86 1689 aa14.53□□□□□ -0.08
SYN3-212ENST00000483062 KDM4FA0A1W2PPD8 638 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms