RNA–Protein interactions for RNA: ENST00000483030.1

CSDE1-206, Transcript of cold shock domain containing E1, humanhuman

TSL 2

Gene CSDE1, Length 873 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-206ENST00000483030 NISCHQ9Y2I1 1504 aa18.59■□□□□ 0.57
CSDE1-206ENST00000483030 ABCC9O60706 1549 aa16.95■□□□□ 0.3
CSDE1-206ENST00000483030 CCDC180Q9P1Z9 1646 aa16.63■□□□□ 0.25
CSDE1-206ENST00000483030 AEBP2Q6ZN18 517 aaPredicted RBP16.48■□□□□ 0.23
CSDE1-206ENST00000483030 DNAJC5BQ9UF47 199 aa16.11■□□□□ 0.17
CSDE1-206ENST00000483030 RB1CC1Q8TDY2 1594 aa15.98■□□□□ 0.15
CSDE1-206ENST00000483030 DCAF8L2P0C7V8 631 aa15.93■□□□□ 0.14
CSDE1-206ENST00000483030 NACADO15069 1562 aa15.84■□□□□ 0.13
CSDE1-206ENST00000483030 PABPN1Q86U42 306 aaKnown RBP eCLIP15.83■□□□□ 0.12
CSDE1-206ENST00000483030 MYO15BQ96JP2 1530 aa15.56■□□□□ 0.08
CSDE1-206ENST00000483030 BICRAQ9NZM4 1560 aa15.53■□□□□ 0.08
CSDE1-206ENST00000483030 UNC13AQ9UPW8 1703 aa15.51■□□□□ 0.07
CSDE1-206ENST00000483030 CHIC1Q5VXU3 224 aa15.41■□□□□ 0.06
CSDE1-206ENST00000483030 ZCCHC6Q5VYS8 1495 aaKnown RBP15.35■□□□□ 0.05
CSDE1-206ENST00000483030 DCAF1Q9Y4B6 1507 aa15.31■□□□□ 0.04
CSDE1-206ENST00000483030 CECR2Q9BXF3 1484 aa15.27■□□□□ 0.04
CSDE1-206ENST00000483030 SHROOM4Q9ULL8 1493 aa15.27■□□□□ 0.03
CSDE1-206ENST00000483030 CC2D2AQ9P2K1 1620 aa15.24■□□□□ 0.03
CSDE1-206ENST00000483030 SCRIBQ14160 1630 aa15.23■□□□□ 0.03
CSDE1-206ENST00000483030 EIF4G1Q04637 1599 aaKnown RBP15.16■□□□□ 0.02
CSDE1-206ENST00000483030 DNAJC5Q9H3Z4 198 aa14.89□□□□□ -0.03
CSDE1-206ENST00000483030 NCAPD3P42695 1498 aa14.68□□□□□ -0.06
CSDE1-206ENST00000483030 ERCC6Q03468 1493 aa14.63□□□□□ -0.07
CSDE1-206ENST00000483030 CUX2O14529 1486 aa14.62□□□□□ -0.07
CSDE1-206ENST00000483030 ATAD2BQ9ULI0 1458 aa14.62□□□□□ -0.07
CSDE1-206ENST00000483030 SMARCA2P51531 1590 aa14.51□□□□□ -0.09
CSDE1-206ENST00000483030 NESP48681 1621 aa14.5□□□□□ -0.09
CSDE1-206ENST00000483030 SMARCA4P51532 1647 aa14.49□□□□□ -0.09
CSDE1-206ENST00000483030 HMGXB3Q12766 1538 aa14.49□□□□□ -0.09
CSDE1-206ENST00000483030 BAZ1BQ9UIG0 1483 aaKnown RBP14.44□□□□□ -0.1
CSDE1-206ENST00000483030 BAZ1AQ9NRL2 1556 aaPredicted RBP14.42□□□□□ -0.1
CSDE1-206ENST00000483030 MROH2BQ7Z745 1585 aa14.34□□□□□ -0.11
CSDE1-206ENST00000483030 PEG3Q9GZU2 1588 aa14.34□□□□□ -0.11
CSDE1-206ENST00000483030 LAMC3Q9Y6N6 1575 aa14.31□□□□□ -0.12
CSDE1-206ENST00000483030 PDS5BQ9NTI5 1447 aa14.31□□□□□ -0.12
CSDE1-206ENST00000483030 THOC2Q8NI27 1593 aaKnown RBP14.3□□□□□ -0.12
CSDE1-206ENST00000483030 CADPSQ9ULU8 1353 aa14.25□□□□□ -0.13
CSDE1-206ENST00000483030 TRIM41Q8WV44 630 aa14.2□□□□□ -0.14
CSDE1-206ENST00000483030 SENP3Q9H4L4 574 aaPredicted RBP14.2□□□□□ -0.14
CSDE1-206ENST00000483030 KIF21AQ7Z4S6 1674 aa14.2□□□□□ -0.14
CSDE1-206ENST00000483030 MRC2Q9UBG0 1479 aa14.16□□□□□ -0.14
CSDE1-206ENST00000483030 WIZO95785 1651 aa14.11□□□□□ -0.15
CSDE1-206ENST00000483030 WDR62O43379 1518 aa14.1□□□□□ -0.15
CSDE1-206ENST00000483030 CEP164Q9UPV0 1460 aa14.07□□□□□ -0.16
CSDE1-206ENST00000483030 FANCD2Q9BXW9 1451 aa14.06□□□□□ -0.16
CSDE1-206ENST00000483030 OSCARQ8IYS5 282 aa14.03□□□□□ -0.16
CSDE1-206ENST00000483030 CFTRP13569 1480 aa14.02□□□□□ -0.16
CSDE1-206ENST00000483030 RSF1Q96T23 1441 aaPredicted RBP14.01□□□□□ -0.17
CSDE1-206ENST00000483030 URB2Q14146 1524 aaKnown RBP13.95□□□□□ -0.18
CSDE1-206ENST00000483030 TOP2AP11388 1531 aaKnown RBP13.93□□□□□ -0.18
CSDE1-206ENST00000483030 PHF23Q9BUL5 403 aaPredicted RBP13.87□□□□□ -0.19
CSDE1-206ENST00000483030 CCDC88BA6NC98 1476 aa13.84□□□□□ -0.19
CSDE1-206ENST00000483030 ZNF608Q9ULD9 1512 aaPredicted RBP13.82□□□□□ -0.2
CSDE1-206ENST00000483030 IFT140Q96RY7 1462 aa13.8□□□□□ -0.2
CSDE1-206ENST00000483030 TOPBP1Q92547 1522 aa13.77□□□□□ -0.21
CSDE1-206ENST00000483030 CYB5RLQ6IPT4 315 aa13.74□□□□□ -0.21
CSDE1-206ENST00000483030 RIMBP3CA6NJZ7 1639 aa13.73□□□□□ -0.21
CSDE1-206ENST00000483030 RIMBP3BA6NNM3 1639 aa13.73□□□□□ -0.21
CSDE1-206ENST00000483030 RIMBP3Q9UFD9 1639 aa13.73□□□□□ -0.21
CSDE1-206ENST00000483030 ABCC8Q09428 1581 aa13.72□□□□□ -0.21
CSDE1-206ENST00000483030 ARHGEF11O15085 1522 aa13.71□□□□□ -0.21
CSDE1-206ENST00000483030 FBLN2P98095 1184 aa13.71□□□□□ -0.21
CSDE1-206ENST00000483030 AQRO60306 1485 aaKnown RBP eCLIP13.7□□□□□ -0.222e-7■■■■□ 20.6
CSDE1-206ENST00000483030 PRDM2Q13029 1718 aa13.69□□□□□ -0.22
CSDE1-206ENST00000483030 POTEDQ86YR6 584 aa13.67□□□□□ -0.22
CSDE1-206ENST00000483030 DNMBPQ6XZF7 1577 aa13.66□□□□□ -0.22
CSDE1-206ENST00000483030 EIF4G3O43432 1585 aaKnown RBP13.65□□□□□ -0.22
CSDE1-206ENST00000483030 TRHP20396 242 aaPredicted RBP13.63□□□□□ -0.23
CSDE1-206ENST00000483030 TDRD9Q8NDG6 1382 aaKnown RBP13.62□□□□□ -0.23
CSDE1-206ENST00000483030 POLA1P09884 1462 aaPredicted RBP13.61□□□□□ -0.23
CSDE1-206ENST00000483030 TARBP1Q13395 1621 aaKnown RBP13.61□□□□□ -0.23
CSDE1-206ENST00000483030 SOGA1O94964 1423 aa13.61□□□□□ -0.23
CSDE1-206ENST00000483030 RAD54L2Q9Y4B4 1467 aa13.61□□□□□ -0.23
CSDE1-206ENST00000483030 ARAP1Q96P48 1450 aa13.58□□□□□ -0.24
CSDE1-206ENST00000483030 CHMP7Q8WUX9 453 aaPredicted RBP13.56□□□□□ -0.24
CSDE1-206ENST00000483030 CHD1O14646 1710 aa13.55□□□□□ -0.24
CSDE1-206ENST00000483030 SNAPC4Q5SXM2 1469 aa13.51□□□□□ -0.25
CSDE1-206ENST00000483030 FGD5Q6ZNL6 1462 aa13.51□□□□□ -0.25
CSDE1-206ENST00000483030 CUX1P39880 1505 aa13.47□□□□□ -0.25
CSDE1-206ENST00000483030 GRIN2BQ13224 1484 aa13.47□□□□□ -0.25
CSDE1-206ENST00000483030 MAGI1Q96QZ7 1491 aaPredicted RBP13.45□□□□□ -0.26
CSDE1-206ENST00000483030 CLASP1Q7Z460 1538 aa13.44□□□□□ -0.26
CSDE1-206ENST00000483030 SYNJ2O15056 1496 aa13.42□□□□□ -0.26
CSDE1-206ENST00000483030 SYNJ1O43426 1573 aa13.42□□□□□ -0.26
CSDE1-206ENST00000483030 WDR97A6NE52 1622 aa13.42□□□□□ -0.26
CSDE1-206ENST00000483030 GAPVD1Q14C86 1478 aa13.41□□□□□ -0.26
CSDE1-206ENST00000483030 SUPT5HO00267 1087 aaKnown RBP13.38□□□□□ -0.27
CSDE1-206ENST00000483030 ABCA10Q8WWZ4 1543 aa13.34□□□□□ -0.27
CSDE1-206ENST00000483030 WRNQ14191 1432 aaPredicted RBP eCLIP13.3□□□□□ -0.282e-7■□□□□ 9.9
CSDE1-206ENST00000483030 FOXD1Q16676 465 aa13.29□□□□□ -0.28
CSDE1-206ENST00000483030 PBRM1Q86U86 1689 aa13.28□□□□□ -0.28
CSDE1-206ENST00000483030 GRIN2AQ12879 1464 aa13.28□□□□□ -0.28
CSDE1-206ENST00000483030 ABCA5Q8WWZ7 1642 aa13.28□□□□□ -0.28
CSDE1-206ENST00000483030 ERCC6L2Q5T890 1561 aa13.26□□□□□ -0.29
CSDE1-206ENST00000483030 NUP160Q12769 1436 aa13.24□□□□□ -0.29
CSDE1-206ENST00000483030 FHAD1B1AJZ9 1412 aa13.22□□□□□ -0.29
CSDE1-206ENST00000483030 CEP170Q5SW79 1584 aa13.21□□□□□ -0.29
CSDE1-206ENST00000483030 JPH4Q96JJ6 628 aa13.2□□□□□ -0.3
CSDE1-206ENST00000483030 ADAMTS12P58397 1594 aa13.2□□□□□ -0.3
CSDE1-206ENST00000483030 TOP2BQ02880 1626 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms