RNA–Protein interactions for RNA: ENST00000483009.1

CCDC28B-205, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-205ENST00000483009 NISCHQ9Y2I1 1504 aa38.37■■■■□ 3.73
CCDC28B-205ENST00000483009 CCDC180Q9P1Z9 1646 aa34.12■■■■□ 3.05
CCDC28B-205ENST00000483009 ABCC9O60706 1549 aa33.63■■■□□ 2.97
CCDC28B-205ENST00000483009 RB1CC1Q8TDY2 1594 aa32.24■■■□□ 2.75
CCDC28B-205ENST00000483009 NACADO15069 1562 aa32.18■■■□□ 2.74
CCDC28B-205ENST00000483009 DCAF8L2P0C7V8 631 aa32.15■■■□□ 2.74
CCDC28B-205ENST00000483009 MYO15BQ96JP2 1530 aa31.95■■■□□ 2.71
CCDC28B-205ENST00000483009 ZCCHC6Q5VYS8 1495 aaKnown RBP31.94■■■□□ 2.7
CCDC28B-205ENST00000483009 DCAF1Q9Y4B6 1507 aa31.75■■■□□ 2.67
CCDC28B-205ENST00000483009 PABPN1Q86U42 306 aaKnown RBP eCLIP31.42■■■□□ 2.62
CCDC28B-205ENST00000483009 UNC13AQ9UPW8 1703 aa31.38■■■□□ 2.61
CCDC28B-205ENST00000483009 BICRAQ9NZM4 1560 aa31.26■■■□□ 2.6
CCDC28B-205ENST00000483009 SCRIBQ14160 1630 aa31.15■■■□□ 2.58
CCDC28B-205ENST00000483009 DNAJC5BQ9UF47 199 aa31.04■■■□□ 2.56
CCDC28B-205ENST00000483009 SHROOM4Q9ULL8 1493 aa30.98■■■□□ 2.55
CCDC28B-205ENST00000483009 EIF4G1Q04637 1599 aaKnown RBP30.47■■■□□ 2.47
CCDC28B-205ENST00000483009 CC2D2AQ9P2K1 1620 aa30.37■■■□□ 2.45
CCDC28B-205ENST00000483009 CECR2Q9BXF3 1484 aa30.25■■■□□ 2.43
CCDC28B-205ENST00000483009 SMARCA4P51532 1647 aa29.78■■■□□ 2.36
CCDC28B-205ENST00000483009 BAZ1AQ9NRL2 1556 aaPredicted RBP29.75■■■□□ 2.35
CCDC28B-205ENST00000483009 NCAPD3P42695 1498 aa29.73■■■□□ 2.35
CCDC28B-205ENST00000483009 ATAD2BQ9ULI0 1458 aa29.72■■■□□ 2.35
CCDC28B-205ENST00000483009 SMARCA2P51531 1590 aa29.64■■■□□ 2.34
CCDC28B-205ENST00000483009 MROH2BQ7Z745 1585 aa29.56■■■□□ 2.32
CCDC28B-205ENST00000483009 HMGXB3Q12766 1538 aa29.54■■■□□ 2.32
CCDC28B-205ENST00000483009 PEG3Q9GZU2 1588 aa29.51■■■□□ 2.31
CCDC28B-205ENST00000483009 BAZ1BQ9UIG0 1483 aaKnown RBP29.45■■■□□ 2.31
CCDC28B-205ENST00000483009 RSF1Q96T23 1441 aaPredicted RBP29.2■■■□□ 2.26
CCDC28B-205ENST00000483009 WIZO95785 1651 aa29.18■■■□□ 2.26
CCDC28B-205ENST00000483009 NESP48681 1621 aa29.04■■■□□ 2.24
CCDC28B-205ENST00000483009 ERCC6Q03468 1493 aa29.01■■■□□ 2.23
CCDC28B-205ENST00000483009 LAMC3Q9Y6N6 1575 aa28.92■■■□□ 2.22
CCDC28B-205ENST00000483009 TOP2AP11388 1531 aaKnown RBP28.92■■■□□ 2.22
CCDC28B-205ENST00000483009 CADPSQ9ULU8 1353 aa28.87■■■□□ 2.21
CCDC28B-205ENST00000483009 PDS5BQ9NTI5 1447 aa28.79■■■□□ 2.2
CCDC28B-205ENST00000483009 CUX2O14529 1486 aa28.77■■■□□ 2.2
CCDC28B-205ENST00000483009 CFTRP13569 1480 aa28.65■■■□□ 2.18
CCDC28B-205ENST00000483009 THOC2Q8NI27 1593 aaKnown RBP28.61■■■□□ 2.17
CCDC28B-205ENST00000483009 KIF21AQ7Z4S6 1674 aa28.6■■■□□ 2.17
CCDC28B-205ENST00000483009 CCDC88BA6NC98 1476 aa28.59■■■□□ 2.17
CCDC28B-205ENST00000483009 FANCD2Q9BXW9 1451 aa28.52■■■□□ 2.16
CCDC28B-205ENST00000483009 MRC2Q9UBG0 1479 aa28.49■■■□□ 2.15
CCDC28B-205ENST00000483009 CEP164Q9UPV0 1460 aa28.49■■■□□ 2.15
CCDC28B-205ENST00000483009 WDR62O43379 1518 aa28.38■■■□□ 2.13
CCDC28B-205ENST00000483009 SUPT5HO00267 1087 aaKnown RBP28.33■■■□□ 2.13
CCDC28B-205ENST00000483009 PRDM2Q13029 1718 aa28.25■■■□□ 2.11
CCDC28B-205ENST00000483009 URB2Q14146 1524 aaKnown RBP28.23■■■□□ 2.11
CCDC28B-205ENST00000483009 DNAJC5Q9H3Z4 198 aa28.11■■■□□ 2.09
CCDC28B-205ENST00000483009 TOPBP1Q92547 1522 aa28.03■■■□□ 2.08
CCDC28B-205ENST00000483009 ABCC8Q09428 1581 aa28.02■■■□□ 2.08
CCDC28B-205ENST00000483009 DNMBPQ6XZF7 1577 aa27.96■■■□□ 2.07
CCDC28B-205ENST00000483009 IFT140Q96RY7 1462 aa27.92■■■□□ 2.06
CCDC28B-205ENST00000483009 ZNF608Q9ULD9 1512 aaPredicted RBP27.79■■■□□ 2.04
CCDC28B-205ENST00000483009 POLA1P09884 1462 aaPredicted RBP27.79■■■□□ 2.04
CCDC28B-205ENST00000483009 CUX1P39880 1505 aa27.75■■■□□ 2.03
CCDC28B-205ENST00000483009 TARBP1Q13395 1621 aaKnown RBP27.69■■■□□ 2.02
CCDC28B-205ENST00000483009 FGD5Q6ZNL6 1462 aa27.69■■■□□ 2.02
CCDC28B-205ENST00000483009 SOGA1O94964 1423 aa27.67■■■□□ 2.02
CCDC28B-205ENST00000483009 RAD54L2Q9Y4B4 1467 aa27.67■■■□□ 2.02
CCDC28B-205ENST00000483009 EIF4G3O43432 1585 aaKnown RBP27.62■■■□□ 2.01
CCDC28B-205ENST00000483009 AQRO60306 1485 aaKnown RBP eCLIP27.62■■■□□ 2.013e-7■■■□□ 17
CCDC28B-205ENST00000483009 OSCARQ8IYS5 282 aa27.56■■■□□ 2
CCDC28B-205ENST00000483009 TDRD9Q8NDG6 1382 aaKnown RBP27.56■■■□□ 2
CCDC28B-205ENST00000483009 WRNQ14191 1432 aaPredicted RBP eCLIP27.54■■■□□ 2
CCDC28B-205ENST00000483009 WDR97A6NE52 1622 aa27.49■■□□□ 1.99
CCDC28B-205ENST00000483009 TOP2BQ02880 1626 aa27.44■■□□□ 1.98
CCDC28B-205ENST00000483009 ABCA10Q8WWZ4 1543 aa27.42■■□□□ 1.98
CCDC28B-205ENST00000483009 SYNJ1O43426 1573 aa27.42■■□□□ 1.98
CCDC28B-205ENST00000483009 BIVM-ERCC5R4GMW8 1640 aa27.41■■□□□ 1.98
CCDC28B-205ENST00000483009 GRIN2BQ13224 1484 aa27.38■■□□□ 1.97
CCDC28B-205ENST00000483009 SNAPC4Q5SXM2 1469 aa27.36■■□□□ 1.97
CCDC28B-205ENST00000483009 GAPVD1Q14C86 1478 aa27.35■■□□□ 1.97
CCDC28B-205ENST00000483009 FBLN2P98095 1184 aa27.33■■□□□ 1.97
CCDC28B-205ENST00000483009 MAGI1Q96QZ7 1491 aaPredicted RBP27.32■■□□□ 1.96
CCDC28B-205ENST00000483009 ABCA5Q8WWZ7 1642 aa27.28■■□□□ 1.96
CCDC28B-205ENST00000483009 CHD1O14646 1710 aa27.25■■□□□ 1.95
CCDC28B-205ENST00000483009 CHMP7Q8WUX9 453 aaPredicted RBP27.24■■□□□ 1.95
CCDC28B-205ENST00000483009 SYNJ2O15056 1496 aa27.21■■□□□ 1.95
CCDC28B-205ENST00000483009 PBRM1Q86U86 1689 aa27.19■■□□□ 1.94
CCDC28B-205ENST00000483009 TRIM41Q8WV44 630 aa27.11■■□□□ 1.93
CCDC28B-205ENST00000483009 ARHGEF11O15085 1522 aa27.09■■□□□ 1.93
CCDC28B-205ENST00000483009 ERICH3Q5RHP9 1530 aa27.07■■□□□ 1.92
CCDC28B-205ENST00000483009 RIMBP3CA6NJZ7 1639 aa27.06■■□□□ 1.92
CCDC28B-205ENST00000483009 RIMBP3BA6NNM3 1639 aa27.06■■□□□ 1.92
CCDC28B-205ENST00000483009 RIMBP3Q9UFD9 1639 aa27.06■■□□□ 1.92
CCDC28B-205ENST00000483009 ADAMTS12P58397 1594 aa27.05■■□□□ 1.92
CCDC28B-205ENST00000483009 FHAD1B1AJZ9 1412 aa27.05■■□□□ 1.92
CCDC28B-205ENST00000483009 CLASP1Q7Z460 1538 aa27.04■■□□□ 1.92
CCDC28B-205ENST00000483009 GRIN2AQ12879 1464 aa27.01■■□□□ 1.91
CCDC28B-205ENST00000483009 KIF27Q86VH2 1401 aa26.98■■□□□ 1.91
CCDC28B-205ENST00000483009 NUP160Q12769 1436 aa26.93■■□□□ 1.9
CCDC28B-205ENST00000483009 IGF1RP08069 1367 aa26.89■■□□□ 1.9
CCDC28B-205ENST00000483009 ARAP1Q96P48 1450 aa26.87■■□□□ 1.89
CCDC28B-205ENST00000483009 CYB5RLQ6IPT4 315 aa26.87■■□□□ 1.89
CCDC28B-205ENST00000483009 CEP170Q5SW79 1584 aa26.85■■□□□ 1.89
CCDC28B-205ENST00000483009 CUL7Q14999 1698 aa26.75■■□□□ 1.87
CCDC28B-205ENST00000483009 CARMIL1Q5VZK9 1371 aa26.73■■□□□ 1.87
CCDC28B-205ENST00000483009 SHROOM2Q13796 1616 aa26.67■■□□□ 1.86
CCDC28B-205ENST00000483009 JPH4Q96JJ6 628 aa26.65■■□□□ 1.86
CCDC28B-205ENST00000483009 RUSC2Q8N2Y8 1516 aa26.65■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 92.9 ms