RNA–Protein interactions for RNA: ENST00000482965.1

SNX4-205, Transcript of sorting nexin 4, humanhuman

TSL 3

Gene SNX4, Length 578 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX4-205ENST00000482965 NISCHQ9Y2I1 1504 aa21.19■□□□□ 0.98
SNX4-205ENST00000482965 AEBP2Q6ZN18 517 aaPredicted RBP18.92■□□□□ 0.62
SNX4-205ENST00000482965 CCDC180Q9P1Z9 1646 aa18.85■□□□□ 0.61
SNX4-205ENST00000482965 ABCC9O60706 1549 aa18.4■□□□□ 0.54
SNX4-205ENST00000482965 CHIC1Q5VXU3 224 aa18.39■□□□□ 0.53
SNX4-205ENST00000482965 RB1CC1Q8TDY2 1594 aa17.73■□□□□ 0.43
SNX4-205ENST00000482965 DCAF8L2P0C7V8 631 aa17.72■□□□□ 0.43
SNX4-205ENST00000482965 NACADO15069 1562 aa17.7■□□□□ 0.42
SNX4-205ENST00000482965 ZCCHC6Q5VYS8 1495 aaKnown RBP17.66■□□□□ 0.42
SNX4-205ENST00000482965 MYO15BQ96JP2 1530 aa17.58■□□□□ 0.41
SNX4-205ENST00000482965 DCAF1Q9Y4B6 1507 aa17.53■□□□□ 0.4
SNX4-205ENST00000482965 UNC13AQ9UPW8 1703 aa17.35■□□□□ 0.37
SNX4-205ENST00000482965 SCRIBQ14160 1630 aa17.21■□□□□ 0.35
SNX4-205ENST00000482965 PABPN1Q86U42 306 aaKnown RBP eCLIP17.19■□□□□ 0.34
SNX4-205ENST00000482965 BICRAQ9NZM4 1560 aa17.16■□□□□ 0.34
SNX4-205ENST00000482965 SHROOM4Q9ULL8 1493 aa16.99■□□□□ 0.31
SNX4-205ENST00000482965 DNAJC5BQ9UF47 199 aa16.81■□□□□ 0.28
SNX4-205ENST00000482965 EIF4G1Q04637 1599 aaKnown RBP16.72■□□□□ 0.27
SNX4-205ENST00000482965 CC2D2AQ9P2K1 1620 aa16.65■□□□□ 0.26
SNX4-205ENST00000482965 CECR2Q9BXF3 1484 aa16.53■□□□□ 0.24
SNX4-205ENST00000482965 SMARCA4P51532 1647 aa16.46■□□□□ 0.23
SNX4-205ENST00000482965 BAZ1AQ9NRL2 1556 aaPredicted RBP16.43■□□□□ 0.22
SNX4-205ENST00000482965 ATAD2BQ9ULI0 1458 aa16.34■□□□□ 0.21
SNX4-205ENST00000482965 SMARCA2P51531 1590 aa16.34■□□□□ 0.21
SNX4-205ENST00000482965 MROH2BQ7Z745 1585 aa16.34■□□□□ 0.21
SNX4-205ENST00000482965 NCAPD3P42695 1498 aa16.31■□□□□ 0.2
SNX4-205ENST00000482965 PEG3Q9GZU2 1588 aa16.27■□□□□ 0.2
SNX4-205ENST00000482965 HMGXB3Q12766 1538 aa16.25■□□□□ 0.19
SNX4-205ENST00000482965 PHF23Q9BUL5 403 aaPredicted RBP16.25■□□□□ 0.19
SNX4-205ENST00000482965 BAZ1BQ9UIG0 1483 aaKnown RBP16.22■□□□□ 0.19
SNX4-205ENST00000482965 WIZO95785 1651 aa16.19■□□□□ 0.18
SNX4-205ENST00000482965 RSF1Q96T23 1441 aaPredicted RBP16.15■□□□□ 0.18
SNX4-205ENST00000482965 TOP2AP11388 1531 aaKnown RBP16.01■□□□□ 0.15
SNX4-205ENST00000482965 SENP3Q9H4L4 574 aaPredicted RBP15.94■□□□□ 0.14
SNX4-205ENST00000482965 NESP48681 1621 aa15.93■□□□□ 0.14
SNX4-205ENST00000482965 LAMC3Q9Y6N6 1575 aa15.91■□□□□ 0.14
SNX4-205ENST00000482965 ERCC6Q03468 1493 aa15.88■□□□□ 0.13
SNX4-205ENST00000482965 CADPSQ9ULU8 1353 aa15.85■□□□□ 0.13
SNX4-205ENST00000482965 CCDC88BA6NC98 1476 aa15.81■□□□□ 0.12
SNX4-205ENST00000482965 SUPT5HO00267 1087 aaKnown RBP15.81■□□□□ 0.12
SNX4-205ENST00000482965 PDS5BQ9NTI5 1447 aa15.79■□□□□ 0.12
SNX4-205ENST00000482965 KIF21AQ7Z4S6 1674 aa15.77■□□□□ 0.12
SNX4-205ENST00000482965 CFTRP13569 1480 aa15.76■□□□□ 0.11
SNX4-205ENST00000482965 PRDM2Q13029 1718 aa15.71■□□□□ 0.11
SNX4-205ENST00000482965 THOC2Q8NI27 1593 aaKnown RBP15.69■□□□□ 0.1
SNX4-205ENST00000482965 FANCD2Q9BXW9 1451 aa15.68■□□□□ 0.1
SNX4-205ENST00000482965 CUX2O14529 1486 aa15.67■□□□□ 0.1
SNX4-205ENST00000482965 CEP164Q9UPV0 1460 aa15.66■□□□□ 0.1
SNX4-205ENST00000482965 MRC2Q9UBG0 1479 aa15.63■□□□□ 0.09
SNX4-205ENST00000482965 WDR62O43379 1518 aa15.57■□□□□ 0.08
SNX4-205ENST00000482965 URB2Q14146 1524 aaKnown RBP15.51■□□□□ 0.07
SNX4-205ENST00000482965 ABCC8Q09428 1581 aa15.44■□□□□ 0.06
SNX4-205ENST00000482965 TOPBP1Q92547 1522 aa15.43■□□□□ 0.06
SNX4-205ENST00000482965 DNMBPQ6XZF7 1577 aa15.43■□□□□ 0.06
SNX4-205ENST00000482965 CUX1P39880 1505 aa15.33■□□□□ 0.05
SNX4-205ENST00000482965 IFT140Q96RY7 1462 aa15.33■□□□□ 0.04
SNX4-205ENST00000482965 POLA1P09884 1462 aaPredicted RBP15.3■□□□□ 0.04
SNX4-205ENST00000482965 FGD5Q6ZNL6 1462 aa15.27■□□□□ 0.04
SNX4-205ENST00000482965 TARBP1Q13395 1621 aaKnown RBP15.26■□□□□ 0.03
SNX4-205ENST00000482965 ZNF608Q9ULD9 1512 aaPredicted RBP15.25■□□□□ 0.03
SNX4-205ENST00000482965 WRNQ14191 1432 aaPredicted RBP eCLIP15.25■□□□□ 0.03
SNX4-205ENST00000482965 RAD54L2Q9Y4B4 1467 aa15.24■□□□□ 0.03
SNX4-205ENST00000482965 SOGA1O94964 1423 aa15.24■□□□□ 0.03
SNX4-205ENST00000482965 BIVM-ERCC5R4GMW8 1640 aa15.22■□□□□ 0.03
SNX4-205ENST00000482965 TOP2BQ02880 1626 aa15.21■□□□□ 0.03
SNX4-205ENST00000482965 SYNJ1O43426 1573 aa15.21■□□□□ 0.03
SNX4-205ENST00000482965 EIF4G3O43432 1585 aaKnown RBP15.21■□□□□ 0.03
SNX4-205ENST00000482965 AQRO60306 1485 aaKnown RBP eCLIP15.17■□□□□ 0.02
SNX4-205ENST00000482965 WDR97A6NE52 1622 aa15.17■□□□□ 0.02
SNX4-205ENST00000482965 TDRD9Q8NDG6 1382 aaKnown RBP15.14■□□□□ 0.01
SNX4-205ENST00000482965 ABCA10Q8WWZ4 1543 aa15.12■□□□□ 0.01
SNX4-205ENST00000482965 DNAJC5Q9H3Z4 198 aa15.12■□□□□ 0.01
SNX4-205ENST00000482965 ABCA5Q8WWZ7 1642 aa15.07■□□□□ 0
SNX4-205ENST00000482965 PBRM1Q86U86 1689 aa15.07■□□□□ 0
SNX4-205ENST00000482965 GRIN2BQ13224 1484 aa15.07■□□□□ 0
SNX4-205ENST00000482965 GAPVD1Q14C86 1478 aa15.07■□□□□ 0
SNX4-205ENST00000482965 CHD1O14646 1710 aa15.04■□□□□ -0
SNX4-205ENST00000482965 SNAPC4Q5SXM2 1469 aa15.04■□□□□ -0
SNX4-205ENST00000482965 MAGI1Q96QZ7 1491 aaPredicted RBP15.02■□□□□ -0
SNX4-205ENST00000482965 OSCARQ8IYS5 282 aa15.02■□□□□ -0
SNX4-205ENST00000482965 FBLN2P98095 1184 aa15□□□□□ -0.01
SNX4-205ENST00000482965 SYNJ2O15056 1496 aa14.95□□□□□ -0.02
SNX4-205ENST00000482965 CHMP7Q8WUX9 453 aaPredicted RBP14.95□□□□□ -0.02
SNX4-205ENST00000482965 ERICH3Q5RHP9 1530 aa14.95□□□□□ -0.02
SNX4-205ENST00000482965 KIF27Q86VH2 1401 aa14.93□□□□□ -0.02
SNX4-205ENST00000482965 ADAMTS12P58397 1594 aa14.93□□□□□ -0.02
SNX4-205ENST00000482965 TRIM41Q8WV44 630 aa14.92□□□□□ -0.02
SNX4-205ENST00000482965 PLPPR3Q6T4P5 718 aa14.9□□□□□ -0.02
SNX4-205ENST00000482965 FHAD1B1AJZ9 1412 aa14.9□□□□□ -0.02
SNX4-205ENST00000482965 FOXD1Q16676 465 aa14.87□□□□□ -0.03
SNX4-205ENST00000482965 GRIN2AQ12879 1464 aa14.87□□□□□ -0.03
SNX4-205ENST00000482965 CUL7Q14999 1698 aa14.84□□□□□ -0.03
SNX4-205ENST00000482965 IGF1RP08069 1367 aa14.84□□□□□ -0.03
SNX4-205ENST00000482965 CLASP1Q7Z460 1538 aa14.83□□□□□ -0.04
SNX4-205ENST00000482965 CEP170Q5SW79 1584 aa14.8□□□□□ -0.04
SNX4-205ENST00000482965 RIMBP3CA6NJZ7 1639 aa14.8□□□□□ -0.04
SNX4-205ENST00000482965 RIMBP3BA6NNM3 1639 aa14.8□□□□□ -0.04
SNX4-205ENST00000482965 RIMBP3Q9UFD9 1639 aa14.8□□□□□ -0.04
SNX4-205ENST00000482965 ARHGEF11O15085 1522 aa14.79□□□□□ -0.04
SNX4-205ENST00000482965 NUP160Q12769 1436 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms