RNA–Protein interactions for RNA: ENST00000482728.1

SMIM4-204, Transcript of small integral membrane protein 4, humanhuman

TSL 2

Gene SMIM4, Length 456 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM4-204ENST00000482728 NISCHQ9Y2I1 1504 aa44.42■■■■■ 4.7
SMIM4-204ENST00000482728 CCDC180Q9P1Z9 1646 aa39.44■■■■□ 3.9
SMIM4-204ENST00000482728 ABCC9O60706 1549 aa38.76■■■■□ 3.8
SMIM4-204ENST00000482728 DCAF8L2P0C7V8 631 aa37.39■■■■□ 3.58
SMIM4-204ENST00000482728 RB1CC1Q8TDY2 1594 aa37.22■■■■□ 3.55
SMIM4-204ENST00000482728 NACADO15069 1562 aa37.17■■■■□ 3.54
SMIM4-204ENST00000482728 ZCCHC6Q5VYS8 1495 aaKnown RBP36.94■■■■□ 3.5
SMIM4-204ENST00000482728 MYO15BQ96JP2 1530 aa36.89■■■■□ 3.5
SMIM4-204ENST00000482728 DCAF1Q9Y4B6 1507 aa36.71■■■■□ 3.47
SMIM4-204ENST00000482728 PABPN1Q86U42 306 aaKnown RBP eCLIP36.3■■■■□ 3.4
SMIM4-204ENST00000482728 UNC13AQ9UPW8 1703 aa36.28■■■■□ 3.4
SMIM4-204ENST00000482728 SCRIBQ14160 1630 aa36.04■■■■□ 3.36
SMIM4-204ENST00000482728 BICRAQ9NZM4 1560 aa36.03■■■■□ 3.36
SMIM4-204ENST00000482728 SHROOM4Q9ULL8 1493 aa35.67■■■■□ 3.3
SMIM4-204ENST00000482728 DNAJC5BQ9UF47 199 aa35.65■■■■□ 3.3
SMIM4-204ENST00000482728 EIF4G1Q04637 1599 aaKnown RBP35.12■■■■□ 3.21
SMIM4-204ENST00000482728 CC2D2AQ9P2K1 1620 aa35■■■■□ 3.19
SMIM4-204ENST00000482728 CECR2Q9BXF3 1484 aa34.84■■■■□ 3.17
SMIM4-204ENST00000482728 SMARCA4P51532 1647 aa34.44■■■■□ 3.1
SMIM4-204ENST00000482728 BAZ1AQ9NRL2 1556 aaPredicted RBP34.44■■■■□ 3.1
SMIM4-204ENST00000482728 NCAPD3P42695 1498 aa34.32■■■■□ 3.08
SMIM4-204ENST00000482728 ATAD2BQ9ULI0 1458 aa34.32■■■■□ 3.08
SMIM4-204ENST00000482728 SMARCA2P51531 1590 aa34.28■■■■□ 3.08
SMIM4-204ENST00000482728 MROH2BQ7Z745 1585 aa34.23■■■■□ 3.07
SMIM4-204ENST00000482728 PEG3Q9GZU2 1588 aa34.08■■■■□ 3.05
SMIM4-204ENST00000482728 HMGXB3Q12766 1538 aa34.08■■■■□ 3.05
SMIM4-204ENST00000482728 BAZ1BQ9UIG0 1483 aaKnown RBP34.06■■■■□ 3.04
SMIM4-204ENST00000482728 RSF1Q96T23 1441 aaPredicted RBP33.86■■■■□ 3.01
SMIM4-204ENST00000482728 WIZO95785 1651 aa33.84■■■■□ 3.01
SMIM4-204ENST00000482728 NESP48681 1621 aa33.5■■■□□ 2.95
SMIM4-204ENST00000482728 TOP2AP11388 1531 aaKnown RBP33.48■■■□□ 2.95
SMIM4-204ENST00000482728 ERCC6Q03468 1493 aa33.45■■■□□ 2.95
SMIM4-204ENST00000482728 LAMC3Q9Y6N6 1575 aa33.38■■■□□ 2.93
SMIM4-204ENST00000482728 CADPSQ9ULU8 1353 aa33.35■■■□□ 2.93
SMIM4-204ENST00000482728 PDS5BQ9NTI5 1447 aa33.25■■■□□ 2.91
SMIM4-204ENST00000482728 CCDC88BA6NC98 1476 aa33.14■■■□□ 2.9
SMIM4-204ENST00000482728 SUPT5HO00267 1087 aaKnown RBP33.13■■■□□ 2.89
SMIM4-204ENST00000482728 CFTRP13569 1480 aa33.1■■■□□ 2.89
SMIM4-204ENST00000482728 CUX2O14529 1486 aa33.04■■■□□ 2.88
SMIM4-204ENST00000482728 KIF21AQ7Z4S6 1674 aa33.04■■■□□ 2.88
SMIM4-204ENST00000482728 FANCD2Q9BXW9 1451 aa32.94■■■□□ 2.86
SMIM4-204ENST00000482728 THOC2Q8NI27 1593 aaKnown RBP32.91■■■□□ 2.86
SMIM4-204ENST00000482728 CEP164Q9UPV0 1460 aa32.9■■■□□ 2.86
SMIM4-204ENST00000482728 MRC2Q9UBG0 1479 aa32.86■■■□□ 2.85
SMIM4-204ENST00000482728 PRDM2Q13029 1718 aa32.74■■■□□ 2.83
SMIM4-204ENST00000482728 WDR62O43379 1518 aa32.69■■■□□ 2.82
SMIM4-204ENST00000482728 URB2Q14146 1524 aaKnown RBP32.58■■■□□ 2.81
SMIM4-204ENST00000482728 ABCC8Q09428 1581 aa32.44■■■□□ 2.78
SMIM4-204ENST00000482728 TOPBP1Q92547 1522 aa32.39■■■□□ 2.78
SMIM4-204ENST00000482728 DNMBPQ6XZF7 1577 aa32.32■■■□□ 2.77
SMIM4-204ENST00000482728 IFT140Q96RY7 1462 aa32.22■■■□□ 2.75
SMIM4-204ENST00000482728 DNAJC5Q9H3Z4 198 aa32.19■■■□□ 2.74
SMIM4-204ENST00000482728 CUX1P39880 1505 aa32.1■■■□□ 2.73
SMIM4-204ENST00000482728 POLA1P09884 1462 aaPredicted RBP32.1■■■□□ 2.73
SMIM4-204ENST00000482728 SOGA1O94964 1423 aa32.06■■■□□ 2.72
SMIM4-204ENST00000482728 ZNF608Q9ULD9 1512 aaPredicted RBP32.05■■■□□ 2.72
SMIM4-204ENST00000482728 FGD5Q6ZNL6 1462 aa32.03■■■□□ 2.72
SMIM4-204ENST00000482728 RAD54L2Q9Y4B4 1467 aa32■■■□□ 2.71
SMIM4-204ENST00000482728 TARBP1Q13395 1621 aaKnown RBP31.99■■■□□ 2.71
SMIM4-204ENST00000482728 WRNQ14191 1432 aaPredicted RBP eCLIP31.94■■■□□ 2.7
SMIM4-204ENST00000482728 AQRO60306 1485 aaKnown RBP eCLIP31.92■■■□□ 2.7
SMIM4-204ENST00000482728 TDRD9Q8NDG6 1382 aaKnown RBP31.89■■■□□ 2.7
SMIM4-204ENST00000482728 EIF4G3O43432 1585 aaKnown RBP31.87■■■□□ 2.69
SMIM4-204ENST00000482728 OSCARQ8IYS5 282 aa31.82■■■□□ 2.68
SMIM4-204ENST00000482728 TOP2BQ02880 1626 aa31.81■■■□□ 2.68
SMIM4-204ENST00000482728 SYNJ1O43426 1573 aa31.78■■■□□ 2.68
SMIM4-204ENST00000482728 BIVM-ERCC5R4GMW8 1640 aa31.77■■■□□ 2.68
SMIM4-204ENST00000482728 WDR97A6NE52 1622 aa31.73■■■□□ 2.67
SMIM4-204ENST00000482728 ABCA10Q8WWZ4 1543 aa31.71■■■□□ 2.67
SMIM4-204ENST00000482728 FBLN2P98095 1184 aa31.69■■■□□ 2.66
SMIM4-204ENST00000482728 GRIN2BQ13224 1484 aa31.65■■■□□ 2.66
SMIM4-204ENST00000482728 GAPVD1Q14C86 1478 aa31.65■■■□□ 2.66
SMIM4-204ENST00000482728 SNAPC4Q5SXM2 1469 aa31.58■■■□□ 2.65
SMIM4-204ENST00000482728 CHMP7Q8WUX9 453 aaPredicted RBP31.56■■■□□ 2.64
SMIM4-204ENST00000482728 MAGI1Q96QZ7 1491 aaPredicted RBP31.54■■■□□ 2.64
SMIM4-204ENST00000482728 ABCA5Q8WWZ7 1642 aa31.53■■■□□ 2.64
SMIM4-204ENST00000482728 CHD1O14646 1710 aa31.49■■■□□ 2.63
SMIM4-204ENST00000482728 PBRM1Q86U86 1689 aa31.48■■■□□ 2.63
SMIM4-204ENST00000482728 SYNJ2O15056 1496 aa31.43■■■□□ 2.62
SMIM4-204ENST00000482728 ERICH3Q5RHP9 1530 aa31.33■■■□□ 2.61
SMIM4-204ENST00000482728 KIF27Q86VH2 1401 aa31.32■■■□□ 2.6
SMIM4-204ENST00000482728 TRIM41Q8WV44 630 aa31.3■■■□□ 2.6
SMIM4-204ENST00000482728 FHAD1B1AJZ9 1412 aa31.28■■■□□ 2.6
SMIM4-204ENST00000482728 ADAMTS12P58397 1594 aa31.24■■■□□ 2.59
SMIM4-204ENST00000482728 GRIN2AQ12879 1464 aa31.21■■■□□ 2.59
SMIM4-204ENST00000482728 IGF1RP08069 1367 aa31.19■■■□□ 2.58
SMIM4-204ENST00000482728 ARHGEF11O15085 1522 aa31.15■■■□□ 2.58
SMIM4-204ENST00000482728 CLASP1Q7Z460 1538 aa31.14■■■□□ 2.57
SMIM4-204ENST00000482728 RIMBP3CA6NJZ7 1639 aa31.13■■■□□ 2.57
SMIM4-204ENST00000482728 RIMBP3BA6NNM3 1639 aa31.13■■■□□ 2.57
SMIM4-204ENST00000482728 RIMBP3Q9UFD9 1639 aa31.13■■■□□ 2.57
SMIM4-204ENST00000482728 NUP160Q12769 1436 aa31.06■■■□□ 2.56
SMIM4-204ENST00000482728 CYB5RLQ6IPT4 315 aa31.03■■■□□ 2.56
SMIM4-204ENST00000482728 CARMIL1Q5VZK9 1371 aa31.02■■■□□ 2.56
SMIM4-204ENST00000482728 CEP170Q5SW79 1584 aa31.01■■■□□ 2.56
SMIM4-204ENST00000482728 CUL7Q14999 1698 aa31.01■■■□□ 2.55
SMIM4-204ENST00000482728 RUSC2Q8N2Y8 1516 aa30.96■■■□□ 2.55
SMIM4-204ENST00000482728 ARAP1Q96P48 1450 aa30.89■■■□□ 2.53
SMIM4-204ENST00000482728 JPH4Q96JJ6 628 aa30.88■■■□□ 2.53
SMIM4-204ENST00000482728 CHIC1Q5VXU3 224 aa30.83■■■□□ 2.53
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms