RNA–Protein interactions for RNA: ENST00000482420.1

TMEM139-208, Transcript of transmembrane protein 139, humanhuman

TSL 1 (best)

Gene TMEM139, Length 510 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM139-208ENST00000482420 NISCHQ9Y2I1 1504 aa47.76■■■■■ 5.24
TMEM139-208ENST00000482420 ABCC9O60706 1549 aa42.99■■■■■ 4.47
TMEM139-208ENST00000482420 CCDC180Q9P1Z9 1646 aa42.85■■■■■ 4.45
TMEM139-208ENST00000482420 RB1CC1Q8TDY2 1594 aa40.83■■■■■ 4.13
TMEM139-208ENST00000482420 NACADO15069 1562 aa40.52■■■■■ 4.08
TMEM139-208ENST00000482420 DCAF8L2P0C7V8 631 aa40.45■■■■■ 4.07
TMEM139-208ENST00000482420 DNAJC5BQ9UF47 199 aa40.33■■■■■ 4.05
TMEM139-208ENST00000482420 PABPN1Q86U42 306 aaKnown RBP eCLIP40.03■■■■■ 4
TMEM139-208ENST00000482420 UNC13AQ9UPW8 1703 aa39.94■■■■□ 3.98
TMEM139-208ENST00000482420 MYO15BQ96JP2 1530 aa39.89■■■■□ 3.98
TMEM139-208ENST00000482420 BICRAQ9NZM4 1560 aa39.65■■■■□ 3.94
TMEM139-208ENST00000482420 ZCCHC6Q5VYS8 1495 aaKnown RBP39.58■■■■□ 3.93
TMEM139-208ENST00000482420 DCAF1Q9Y4B6 1507 aa39.38■■■■□ 3.89
TMEM139-208ENST00000482420 SCRIBQ14160 1630 aa39.16■■■■□ 3.86
TMEM139-208ENST00000482420 SHROOM4Q9ULL8 1493 aa39.03■■■■□ 3.84
TMEM139-208ENST00000482420 CC2D2AQ9P2K1 1620 aa38.8■■■■□ 3.8
TMEM139-208ENST00000482420 CECR2Q9BXF3 1484 aa38.7■■■■□ 3.79
TMEM139-208ENST00000482420 EIF4G1Q04637 1599 aaKnown RBP38.7■■■■□ 3.79
TMEM139-208ENST00000482420 NCAPD3P42695 1498 aa37.39■■■■□ 3.58
TMEM139-208ENST00000482420 ATAD2BQ9ULI0 1458 aa37.32■■■■□ 3.56
TMEM139-208ENST00000482420 SMARCA4P51532 1647 aa37.28■■■■□ 3.56
TMEM139-208ENST00000482420 SMARCA2P51531 1590 aa37.2■■■■□ 3.55
TMEM139-208ENST00000482420 HMGXB3Q12766 1538 aa37.14■■■■□ 3.54
TMEM139-208ENST00000482420 ERCC6Q03468 1493 aa37.13■■■■□ 3.53
TMEM139-208ENST00000482420 BAZ1AQ9NRL2 1556 aaPredicted RBP37.08■■■■□ 3.53
TMEM139-208ENST00000482420 DNAJC5Q9H3Z4 198 aa37.01■■■■□ 3.52
TMEM139-208ENST00000482420 CUX2O14529 1486 aa36.99■■■■□ 3.51
TMEM139-208ENST00000482420 BAZ1BQ9UIG0 1483 aaKnown RBP36.99■■■■□ 3.51
TMEM139-208ENST00000482420 NESP48681 1621 aa36.92■■■■□ 3.5
TMEM139-208ENST00000482420 PEG3Q9GZU2 1588 aa36.87■■■■□ 3.49
TMEM139-208ENST00000482420 MROH2BQ7Z745 1585 aa36.83■■■■□ 3.49
TMEM139-208ENST00000482420 LAMC3Q9Y6N6 1575 aa36.58■■■■□ 3.45
TMEM139-208ENST00000482420 THOC2Q8NI27 1593 aaKnown RBP36.52■■■■□ 3.44
TMEM139-208ENST00000482420 KIF21AQ7Z4S6 1674 aa36.43■■■■□ 3.42
TMEM139-208ENST00000482420 WIZO95785 1651 aa36.42■■■■□ 3.42
TMEM139-208ENST00000482420 PDS5BQ9NTI5 1447 aa36.38■■■■□ 3.41
TMEM139-208ENST00000482420 CADPSQ9ULU8 1353 aa36.28■■■■□ 3.4
TMEM139-208ENST00000482420 MRC2Q9UBG0 1479 aa36.09■■■■□ 3.37
TMEM139-208ENST00000482420 RSF1Q96T23 1441 aaPredicted RBP36.03■■■■□ 3.36
TMEM139-208ENST00000482420 WDR62O43379 1518 aa36■■■■□ 3.35
TMEM139-208ENST00000482420 CEP164Q9UPV0 1460 aa35.95■■■■□ 3.35
TMEM139-208ENST00000482420 TOP2AP11388 1531 aaKnown RBP35.92■■■■□ 3.34
TMEM139-208ENST00000482420 FANCD2Q9BXW9 1451 aa35.91■■■■□ 3.34
TMEM139-208ENST00000482420 CFTRP13569 1480 aa35.86■■■■□ 3.33
TMEM139-208ENST00000482420 URB2Q14146 1524 aaKnown RBP35.62■■■■□ 3.29
TMEM139-208ENST00000482420 CCDC88BA6NC98 1476 aa35.52■■■■□ 3.28
TMEM139-208ENST00000482420 PRDM2Q13029 1718 aa35.51■■■■□ 3.27
TMEM139-208ENST00000482420 TRIM41Q8WV44 630 aa35.49■■■■□ 3.27
TMEM139-208ENST00000482420 OSCARQ8IYS5 282 aa35.31■■■■□ 3.24
TMEM139-208ENST00000482420 TOPBP1Q92547 1522 aa35.22■■■■□ 3.23
TMEM139-208ENST00000482420 ZNF608Q9ULD9 1512 aaPredicted RBP35.22■■■■□ 3.23
TMEM139-208ENST00000482420 IFT140Q96RY7 1462 aa35.21■■■■□ 3.23
TMEM139-208ENST00000482420 ABCC8Q09428 1581 aa35.08■■■■□ 3.21
TMEM139-208ENST00000482420 DNMBPQ6XZF7 1577 aa35.08■■■■□ 3.21
TMEM139-208ENST00000482420 EIF4G3O43432 1585 aaKnown RBP35.01■■■■□ 3.2
TMEM139-208ENST00000482420 RIMBP3CA6NJZ7 1639 aa34.89■■■■□ 3.18
TMEM139-208ENST00000482420 RIMBP3BA6NNM3 1639 aa34.89■■■■□ 3.18
TMEM139-208ENST00000482420 TARBP1Q13395 1621 aaKnown RBP34.89■■■■□ 3.18
TMEM139-208ENST00000482420 RIMBP3Q9UFD9 1639 aa34.89■■■■□ 3.18
TMEM139-208ENST00000482420 AQRO60306 1485 aaKnown RBP eCLIP34.88■■■■□ 3.17
TMEM139-208ENST00000482420 POLA1P09884 1462 aaPredicted RBP34.86■■■■□ 3.17
TMEM139-208ENST00000482420 ARHGEF11O15085 1522 aa34.77■■■■□ 3.16
TMEM139-208ENST00000482420 RAD54L2Q9Y4B4 1467 aa34.77■■■■□ 3.16
TMEM139-208ENST00000482420 CHD1O14646 1710 aa34.75■■■■□ 3.15
TMEM139-208ENST00000482420 FBLN2P98095 1184 aa34.7■■■■□ 3.15
TMEM139-208ENST00000482420 SOGA1O94964 1423 aa34.7■■■■□ 3.15
TMEM139-208ENST00000482420 TDRD9Q8NDG6 1382 aaKnown RBP34.66■■■■□ 3.14
TMEM139-208ENST00000482420 FGD5Q6ZNL6 1462 aa34.65■■■■□ 3.14
TMEM139-208ENST00000482420 CUX1P39880 1505 aa34.61■■■■□ 3.13
TMEM139-208ENST00000482420 CYB5RLQ6IPT4 315 aa34.54■■■■□ 3.12
TMEM139-208ENST00000482420 SNAPC4Q5SXM2 1469 aa34.53■■■■□ 3.12
TMEM139-208ENST00000482420 SUPT5HO00267 1087 aaKnown RBP34.51■■■■□ 3.12
TMEM139-208ENST00000482420 WDR97A6NE52 1622 aa34.48■■■■□ 3.11
TMEM139-208ENST00000482420 ARAP1Q96P48 1450 aa34.43■■■■□ 3.1
TMEM139-208ENST00000482420 CHMP7Q8WUX9 453 aaPredicted RBP34.39■■■■□ 3.1
TMEM139-208ENST00000482420 GRIN2BQ13224 1484 aa34.39■■■■□ 3.1
TMEM139-208ENST00000482420 MAGI1Q96QZ7 1491 aaPredicted RBP34.39■■■■□ 3.1
TMEM139-208ENST00000482420 CLASP1Q7Z460 1538 aa34.32■■■■□ 3.08
TMEM139-208ENST00000482420 SYNJ1O43426 1573 aa34.31■■■■□ 3.08
TMEM139-208ENST00000482420 PBRM1Q86U86 1689 aa34.28■■■■□ 3.08
TMEM139-208ENST00000482420 SYNJ2O15056 1496 aa34.28■■■■□ 3.08
TMEM139-208ENST00000482420 GAPVD1Q14C86 1478 aa34.28■■■■□ 3.08
TMEM139-208ENST00000482420 ABCA10Q8WWZ4 1543 aa34.22■■■■□ 3.07
TMEM139-208ENST00000482420 TRHP20396 242 aaPredicted RBP34.2■■■■□ 3.07
TMEM139-208ENST00000482420 ABCA5Q8WWZ7 1642 aa34.19■■■■□ 3.06
TMEM139-208ENST00000482420 WRNQ14191 1432 aaPredicted RBP eCLIP34.09■■■■□ 3.05
TMEM139-208ENST00000482420 TOP2BQ02880 1626 aa34.02■■■■□ 3.04
TMEM139-208ENST00000482420 BIVM-ERCC5R4GMW8 1640 aa34.02■■■■□ 3.04
TMEM139-208ENST00000482420 GRIN2AQ12879 1464 aa33.96■■■■□ 3.03
TMEM139-208ENST00000482420 ADAMTS12P58397 1594 aa33.95■■■■□ 3.03
TMEM139-208ENST00000482420 CEP170Q5SW79 1584 aa33.86■■■■□ 3.01
TMEM139-208ENST00000482420 ERCC6L2Q5T890 1561 aa33.85■■■■□ 3.01
TMEM139-208ENST00000482420 FHAD1B1AJZ9 1412 aa33.82■■■■□ 3
TMEM139-208ENST00000482420 NUP160Q12769 1436 aa33.82■■■■□ 3
TMEM139-208ENST00000482420 ERICH3Q5RHP9 1530 aa33.79■■■■□ 3
TMEM139-208ENST00000482420 SHROOM2Q13796 1616 aa33.68■■■□□ 2.98
TMEM139-208ENST00000482420 PRG4Q92954 1404 aaPredicted RBP33.54■■■□□ 2.96
TMEM139-208ENST00000482420 JPH4Q96JJ6 628 aa33.49■■■□□ 2.95
TMEM139-208ENST00000482420 RUSC2Q8N2Y8 1516 aa33.48■■■□□ 2.95
TMEM139-208ENST00000482420 KIF27Q86VH2 1401 aa33.36■■■□□ 2.93
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms