RNA–Protein interactions for RNA: ENST00000482192.5

HMGN1-213, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 3

Gene HMGN1, Length 793 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-213ENST00000482192 NISCHQ9Y2I1 1504 aa29.18■■■□□ 2.26
HMGN1-213ENST00000482192 CCDC180Q9P1Z9 1646 aa26.03■■□□□ 1.76
HMGN1-213ENST00000482192 ABCC9O60706 1549 aa25.62■■□□□ 1.69
HMGN1-213ENST00000482192 RB1CC1Q8TDY2 1594 aa24.59■■□□□ 1.53
HMGN1-213ENST00000482192 NACADO15069 1562 aa24.52■■□□□ 1.52
HMGN1-213ENST00000482192 DCAF8L2P0C7V8 631 aa24.42■■□□□ 1.5
HMGN1-213ENST00000482192 MYO15BQ96JP2 1530 aa24.33■■□□□ 1.49
HMGN1-213ENST00000482192 ZCCHC6Q5VYS8 1495 aaKnown RBP24.28■■□□□ 1.48
HMGN1-213ENST00000482192 DCAF1Q9Y4B6 1507 aa24.15■■□□□ 1.46
HMGN1-213ENST00000482192 UNC13AQ9UPW8 1703 aa23.96■■□□□ 1.43
HMGN1-213ENST00000482192 PABPN1Q86U42 306 aaKnown RBP eCLIP23.89■■□□□ 1.41
HMGN1-213ENST00000482192 BICRAQ9NZM4 1560 aa23.82■■□□□ 1.4
HMGN1-213ENST00000482192 SCRIBQ14160 1630 aa23.72■■□□□ 1.39
HMGN1-213ENST00000482192 DNAJC5BQ9UF47 199 aa23.63■■□□□ 1.37
HMGN1-213ENST00000482192 SHROOM4Q9ULL8 1493 aa23.62■■□□□ 1.37
HMGN1-213ENST00000482192 EIF4G1Q04637 1599 aaKnown RBP23.23■■□□□ 1.31
HMGN1-213ENST00000482192 CC2D2AQ9P2K1 1620 aa23.17■■□□□ 1.3
HMGN1-213ENST00000482192 CECR2Q9BXF3 1484 aa23.05■■□□□ 1.28
HMGN1-213ENST00000482192 SMARCA4P51532 1647 aa22.68■■□□□ 1.22
HMGN1-213ENST00000482192 BAZ1AQ9NRL2 1556 aaPredicted RBP22.65■■□□□ 1.22
HMGN1-213ENST00000482192 NCAPD3P42695 1498 aa22.62■■□□□ 1.21
HMGN1-213ENST00000482192 ATAD2BQ9ULI0 1458 aa22.6■■□□□ 1.21
HMGN1-213ENST00000482192 SMARCA2P51531 1590 aa22.58■■□□□ 1.2
HMGN1-213ENST00000482192 HMGXB3Q12766 1538 aa22.5■■□□□ 1.19
HMGN1-213ENST00000482192 PEG3Q9GZU2 1588 aa22.47■■□□□ 1.19
HMGN1-213ENST00000482192 MROH2BQ7Z745 1585 aa22.46■■□□□ 1.19
HMGN1-213ENST00000482192 BAZ1BQ9UIG0 1483 aaKnown RBP22.41■■□□□ 1.18
HMGN1-213ENST00000482192 WIZO95785 1651 aa22.2■■□□□ 1.15
HMGN1-213ENST00000482192 RSF1Q96T23 1441 aaPredicted RBP22.15■■□□□ 1.14
HMGN1-213ENST00000482192 ERCC6Q03468 1493 aa22.12■■□□□ 1.13
HMGN1-213ENST00000482192 NESP48681 1621 aa22.1■■□□□ 1.13
HMGN1-213ENST00000482192 LAMC3Q9Y6N6 1575 aa22.06■■□□□ 1.12
HMGN1-213ENST00000482192 TOP2AP11388 1531 aaKnown RBP22■■□□□ 1.11
HMGN1-213ENST00000482192 CADPSQ9ULU8 1353 aa21.95■■□□□ 1.1
HMGN1-213ENST00000482192 CUX2O14529 1486 aa21.95■■□□□ 1.1
HMGN1-213ENST00000482192 PDS5BQ9NTI5 1447 aa21.91■■□□□ 1.1
HMGN1-213ENST00000482192 KIF21AQ7Z4S6 1674 aa21.83■■□□□ 1.09
HMGN1-213ENST00000482192 THOC2Q8NI27 1593 aaKnown RBP21.82■■□□□ 1.08
HMGN1-213ENST00000482192 CFTRP13569 1480 aa21.78■■□□□ 1.08
HMGN1-213ENST00000482192 CCDC88BA6NC98 1476 aa21.71■■□□□ 1.07
HMGN1-213ENST00000482192 MRC2Q9UBG0 1479 aa21.71■■□□□ 1.07
HMGN1-213ENST00000482192 FANCD2Q9BXW9 1451 aa21.7■■□□□ 1.06
HMGN1-213ENST00000482192 CEP164Q9UPV0 1460 aa21.7■■□□□ 1.06
HMGN1-213ENST00000482192 WDR62O43379 1518 aa21.64■■□□□ 1.05
HMGN1-213ENST00000482192 PRDM2Q13029 1718 aa21.58■■□□□ 1.04
HMGN1-213ENST00000482192 URB2Q14146 1524 aaKnown RBP21.48■■□□□ 1.03
HMGN1-213ENST00000482192 DNAJC5Q9H3Z4 198 aa21.46■■□□□ 1.03
HMGN1-213ENST00000482192 SUPT5HO00267 1087 aaKnown RBP21.44■■□□□ 1.02
HMGN1-213ENST00000482192 ABCC8Q09428 1581 aa21.34■■□□□ 1.01
HMGN1-213ENST00000482192 TOPBP1Q92547 1522 aa21.33■■□□□ 1
HMGN1-213ENST00000482192 DNMBPQ6XZF7 1577 aa21.29■■□□□ 1
HMGN1-213ENST00000482192 IFT140Q96RY7 1462 aa21.25■□□□□ 0.99
HMGN1-213ENST00000482192 ZNF608Q9ULD9 1512 aaPredicted RBP21.14■□□□□ 0.98
HMGN1-213ENST00000482192 POLA1P09884 1462 aaPredicted RBP21.13■□□□□ 0.97
HMGN1-213ENST00000482192 TARBP1Q13395 1621 aaKnown RBP21.1■□□□□ 0.97
HMGN1-213ENST00000482192 CUX1P39880 1505 aa21.09■□□□□ 0.97
HMGN1-213ENST00000482192 EIF4G3O43432 1585 aaKnown RBP21.08■□□□□ 0.97
HMGN1-213ENST00000482192 FGD5Q6ZNL6 1462 aa21.07■□□□□ 0.96
HMGN1-213ENST00000482192 SOGA1O94964 1423 aa21.04■□□□□ 0.96
HMGN1-213ENST00000482192 RAD54L2Q9Y4B4 1467 aa21.03■□□□□ 0.96
HMGN1-213ENST00000482192 AQRO60306 1485 aaKnown RBP eCLIP21■□□□□ 0.953e-11■■■□□ 19.2
HMGN1-213ENST00000482192 OSCARQ8IYS5 282 aa20.99■□□□□ 0.95
HMGN1-213ENST00000482192 WDR97A6NE52 1622 aa20.96■□□□□ 0.95
HMGN1-213ENST00000482192 TDRD9Q8NDG6 1382 aaKnown RBP20.94■□□□□ 0.94
HMGN1-213ENST00000482192 WRNQ14191 1432 aaPredicted RBP eCLIP20.91■□□□□ 0.94
HMGN1-213ENST00000482192 TOP2BQ02880 1626 aa20.87■□□□□ 0.93
HMGN1-213ENST00000482192 BIVM-ERCC5R4GMW8 1640 aa20.87■□□□□ 0.93
HMGN1-213ENST00000482192 SYNJ1O43426 1573 aa20.85■□□□□ 0.93
HMGN1-213ENST00000482192 ABCA10Q8WWZ4 1543 aa20.85■□□□□ 0.93
HMGN1-213ENST00000482192 GRIN2BQ13224 1484 aa20.83■□□□□ 0.93
HMGN1-213ENST00000482192 SNAPC4Q5SXM2 1469 aa20.81■□□□□ 0.92
HMGN1-213ENST00000482192 CHD1O14646 1710 aa20.81■□□□□ 0.92
HMGN1-213ENST00000482192 MAGI1Q96QZ7 1491 aaPredicted RBP20.81■□□□□ 0.92
HMGN1-213ENST00000482192 GAPVD1Q14C86 1478 aa20.8■□□□□ 0.92
HMGN1-213ENST00000482192 FBLN2P98095 1184 aa20.79■□□□□ 0.92
HMGN1-213ENST00000482192 ABCA5Q8WWZ7 1642 aa20.78■□□□□ 0.92
HMGN1-213ENST00000482192 PBRM1Q86U86 1689 aa20.75■□□□□ 0.91
HMGN1-213ENST00000482192 SYNJ2O15056 1496 aa20.72■□□□□ 0.91
HMGN1-213ENST00000482192 CHMP7Q8WUX9 453 aaPredicted RBP20.71■□□□□ 0.91
HMGN1-213ENST00000482192 AEBP2Q6ZN18 517 aaPredicted RBP20.7■□□□□ 0.9
HMGN1-213ENST00000482192 TRIM41Q8WV44 630 aa20.67■□□□□ 0.9
HMGN1-213ENST00000482192 RIMBP3CA6NJZ7 1639 aa20.67■□□□□ 0.9
HMGN1-213ENST00000482192 RIMBP3BA6NNM3 1639 aa20.67■□□□□ 0.9
HMGN1-213ENST00000482192 RIMBP3Q9UFD9 1639 aa20.67■□□□□ 0.9
HMGN1-213ENST00000482192 ARHGEF11O15085 1522 aa20.66■□□□□ 0.9
HMGN1-213ENST00000482192 CLASP1Q7Z460 1538 aa20.62■□□□□ 0.89
HMGN1-213ENST00000482192 ERICH3Q5RHP9 1530 aa20.61■□□□□ 0.89
HMGN1-213ENST00000482192 ADAMTS12P58397 1594 aa20.6■□□□□ 0.89
HMGN1-213ENST00000482192 GRIN2AQ12879 1464 aa20.56■□□□□ 0.88
HMGN1-213ENST00000482192 FHAD1B1AJZ9 1412 aa20.56■□□□□ 0.88
HMGN1-213ENST00000482192 KIF27Q86VH2 1401 aa20.5■□□□□ 0.87
HMGN1-213ENST00000482192 NUP160Q12769 1436 aa20.48■□□□□ 0.87
HMGN1-213ENST00000482192 ARAP1Q96P48 1450 aa20.47■□□□□ 0.87
HMGN1-213ENST00000482192 CEP170Q5SW79 1584 aa20.46■□□□□ 0.87
HMGN1-213ENST00000482192 CYB5RLQ6IPT4 315 aa20.45■□□□□ 0.86
HMGN1-213ENST00000482192 IGF1RP08069 1367 aa20.4■□□□□ 0.86
HMGN1-213ENST00000482192 CUL7Q14999 1698 aa20.38■□□□□ 0.85
HMGN1-213ENST00000482192 SHROOM2Q13796 1616 aa20.35■□□□□ 0.85
HMGN1-213ENST00000482192 RUSC2Q8N2Y8 1516 aa20.31■□□□□ 0.84
HMGN1-213ENST00000482192 ERCC6L2Q5T890 1561 aa20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 93.3 ms