RNA–Protein interactions for RNA: ENST00000482065.1

LIMS3-204, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 690 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-204ENST00000482065 NISCHQ9Y2I1 1504 aa36.88■■■■□ 3.49
LIMS3-204ENST00000482065 CCDC180Q9P1Z9 1646 aa32.93■■■□□ 2.86
LIMS3-204ENST00000482065 ABCC9O60706 1549 aa32.67■■■□□ 2.82
LIMS3-204ENST00000482065 RB1CC1Q8TDY2 1594 aa31.19■■■□□ 2.58
LIMS3-204ENST00000482065 NACADO15069 1562 aa31.05■■■□□ 2.56
LIMS3-204ENST00000482065 DCAF8L2P0C7V8 631 aa31.02■■■□□ 2.56
LIMS3-204ENST00000482065 MYO15BQ96JP2 1530 aa30.71■■■□□ 2.51
LIMS3-204ENST00000482065 ZCCHC6Q5VYS8 1495 aaKnown RBP30.64■■■□□ 2.5
LIMS3-204ENST00000482065 UNC13AQ9UPW8 1703 aa30.53■■■□□ 2.48
LIMS3-204ENST00000482065 PABPN1Q86U42 306 aaKnown RBP eCLIP30.48■■■□□ 2.47
LIMS3-204ENST00000482065 DCAF1Q9Y4B6 1507 aa30.45■■■□□ 2.47
LIMS3-204ENST00000482065 DNAJC5BQ9UF47 199 aa30.36■■■□□ 2.45
LIMS3-204ENST00000482065 BICRAQ9NZM4 1560 aa30.31■■■□□ 2.44
LIMS3-204ENST00000482065 SCRIBQ14160 1630 aa30.09■■■□□ 2.41
LIMS3-204ENST00000482065 SHROOM4Q9ULL8 1493 aa29.86■■■□□ 2.37
LIMS3-204ENST00000482065 EIF4G1Q04637 1599 aaKnown RBP29.52■■■□□ 2.32
LIMS3-204ENST00000482065 CC2D2AQ9P2K1 1620 aa29.52■■■□□ 2.32
LIMS3-204ENST00000482065 CECR2Q9BXF3 1484 aa29.37■■■□□ 2.29
LIMS3-204ENST00000482065 SMARCA4P51532 1647 aa28.71■■■□□ 2.19
LIMS3-204ENST00000482065 NCAPD3P42695 1498 aa28.66■■■□□ 2.18
LIMS3-204ENST00000482065 ATAD2BQ9ULI0 1458 aa28.66■■■□□ 2.18
LIMS3-204ENST00000482065 BAZ1AQ9NRL2 1556 aaPredicted RBP28.59■■■□□ 2.17
LIMS3-204ENST00000482065 SMARCA2P51531 1590 aa28.57■■■□□ 2.16
LIMS3-204ENST00000482065 HMGXB3Q12766 1538 aa28.49■■■□□ 2.15
LIMS3-204ENST00000482065 MROH2BQ7Z745 1585 aa28.45■■■□□ 2.14
LIMS3-204ENST00000482065 PEG3Q9GZU2 1588 aa28.4■■■□□ 2.14
LIMS3-204ENST00000482065 BAZ1BQ9UIG0 1483 aaKnown RBP28.39■■■□□ 2.13
LIMS3-204ENST00000482065 NESP48681 1621 aa28.17■■■□□ 2.1
LIMS3-204ENST00000482065 ERCC6Q03468 1493 aa28.16■■■□□ 2.1
LIMS3-204ENST00000482065 WIZO95785 1651 aa28.13■■■□□ 2.09
LIMS3-204ENST00000482065 CUX2O14529 1486 aa27.97■■■□□ 2.07
LIMS3-204ENST00000482065 LAMC3Q9Y6N6 1575 aa27.97■■■□□ 2.07
LIMS3-204ENST00000482065 RSF1Q96T23 1441 aaPredicted RBP27.96■■■□□ 2.07
LIMS3-204ENST00000482065 CADPSQ9ULU8 1353 aa27.82■■■□□ 2.04
LIMS3-204ENST00000482065 KIF21AQ7Z4S6 1674 aa27.81■■■□□ 2.04
LIMS3-204ENST00000482065 THOC2Q8NI27 1593 aaKnown RBP27.8■■■□□ 2.04
LIMS3-204ENST00000482065 PDS5BQ9NTI5 1447 aa27.79■■■□□ 2.04
LIMS3-204ENST00000482065 TOP2AP11388 1531 aaKnown RBP27.77■■■□□ 2.04
LIMS3-204ENST00000482065 DNAJC5Q9H3Z4 198 aa27.58■■■□□ 2.01
LIMS3-204ENST00000482065 CFTRP13569 1480 aa27.57■■■□□ 2
LIMS3-204ENST00000482065 MRC2Q9UBG0 1479 aa27.56■■■□□ 2
LIMS3-204ENST00000482065 FANCD2Q9BXW9 1451 aa27.52■■■□□ 2
LIMS3-204ENST00000482065 CEP164Q9UPV0 1460 aa27.51■■■□□ 2
LIMS3-204ENST00000482065 WDR62O43379 1518 aa27.48■■□□□ 1.99
LIMS3-204ENST00000482065 CCDC88BA6NC98 1476 aa27.46■■□□□ 1.99
LIMS3-204ENST00000482065 PRDM2Q13029 1718 aa27.33■■□□□ 1.97
LIMS3-204ENST00000482065 URB2Q14146 1524 aaKnown RBP27.29■■□□□ 1.96
LIMS3-204ENST00000482065 TOPBP1Q92547 1522 aa27.04■■□□□ 1.92
LIMS3-204ENST00000482065 SUPT5HO00267 1087 aaKnown RBP27■■□□□ 1.91
LIMS3-204ENST00000482065 DNMBPQ6XZF7 1577 aa26.97■■□□□ 1.91
LIMS3-204ENST00000482065 ABCC8Q09428 1581 aa26.95■■□□□ 1.9
LIMS3-204ENST00000482065 IFT140Q96RY7 1462 aa26.94■■□□□ 1.9
LIMS3-204ENST00000482065 ZNF608Q9ULD9 1512 aaPredicted RBP26.91■■□□□ 1.9
LIMS3-204ENST00000482065 POLA1P09884 1462 aaPredicted RBP26.79■■□□□ 1.88
LIMS3-204ENST00000482065 TARBP1Q13395 1621 aaKnown RBP26.77■■□□□ 1.88
LIMS3-204ENST00000482065 EIF4G3O43432 1585 aaKnown RBP26.76■■□□□ 1.87
LIMS3-204ENST00000482065 OSCARQ8IYS5 282 aa26.75■■□□□ 1.87
LIMS3-204ENST00000482065 CUX1P39880 1505 aa26.71■■□□□ 1.87
LIMS3-204ENST00000482065 RAD54L2Q9Y4B4 1467 aa26.7■■□□□ 1.87
LIMS3-204ENST00000482065 AQRO60306 1485 aaKnown RBP eCLIP26.69■■□□□ 1.86
LIMS3-204ENST00000482065 FGD5Q6ZNL6 1462 aa26.68■■□□□ 1.86
LIMS3-204ENST00000482065 SOGA1O94964 1423 aa26.66■■□□□ 1.86
LIMS3-204ENST00000482065 TDRD9Q8NDG6 1382 aaKnown RBP26.58■■□□□ 1.84
LIMS3-204ENST00000482065 TRIM41Q8WV44 630 aa26.57■■□□□ 1.84
LIMS3-204ENST00000482065 CHD1O14646 1710 aa26.51■■□□□ 1.83
LIMS3-204ENST00000482065 WDR97A6NE52 1622 aa26.48■■□□□ 1.83
LIMS3-204ENST00000482065 FBLN2P98095 1184 aa26.45■■□□□ 1.82
LIMS3-204ENST00000482065 SNAPC4Q5SXM2 1469 aa26.44■■□□□ 1.82
LIMS3-204ENST00000482065 RIMBP3CA6NJZ7 1639 aa26.4■■□□□ 1.82
LIMS3-204ENST00000482065 RIMBP3BA6NNM3 1639 aa26.4■■□□□ 1.82
LIMS3-204ENST00000482065 RIMBP3Q9UFD9 1639 aa26.4■■□□□ 1.82
LIMS3-204ENST00000482065 GRIN2BQ13224 1484 aa26.38■■□□□ 1.81
LIMS3-204ENST00000482065 ABCA10Q8WWZ4 1543 aa26.37■■□□□ 1.81
LIMS3-204ENST00000482065 WRNQ14191 1432 aaPredicted RBP eCLIP26.37■■□□□ 1.81
LIMS3-204ENST00000482065 SYNJ1O43426 1573 aa26.36■■□□□ 1.81
LIMS3-204ENST00000482065 ARHGEF11O15085 1522 aa26.35■■□□□ 1.81
LIMS3-204ENST00000482065 TOP2BQ02880 1626 aa26.35■■□□□ 1.81
LIMS3-204ENST00000482065 BIVM-ERCC5R4GMW8 1640 aa26.35■■□□□ 1.81
LIMS3-204ENST00000482065 GAPVD1Q14C86 1478 aa26.35■■□□□ 1.81
LIMS3-204ENST00000482065 MAGI1Q96QZ7 1491 aaPredicted RBP26.35■■□□□ 1.81
LIMS3-204ENST00000482065 PBRM1Q86U86 1689 aa26.33■■□□□ 1.81
LIMS3-204ENST00000482065 ABCA5Q8WWZ7 1642 aa26.32■■□□□ 1.8
LIMS3-204ENST00000482065 CHMP7Q8WUX9 453 aaPredicted RBP26.29■■□□□ 1.8
LIMS3-204ENST00000482065 SYNJ2O15056 1496 aa26.26■■□□□ 1.79
LIMS3-204ENST00000482065 CLASP1Q7Z460 1538 aa26.2■■□□□ 1.79
LIMS3-204ENST00000482065 CYB5RLQ6IPT4 315 aa26.14■■□□□ 1.78
LIMS3-204ENST00000482065 ARAP1Q96P48 1450 aa26.13■■□□□ 1.77
LIMS3-204ENST00000482065 ADAMTS12P58397 1594 aa26.1■■□□□ 1.77
LIMS3-204ENST00000482065 GRIN2AQ12879 1464 aa26.06■■□□□ 1.76
LIMS3-204ENST00000482065 ERICH3Q5RHP9 1530 aa26.04■■□□□ 1.76
LIMS3-204ENST00000482065 FHAD1B1AJZ9 1412 aa26.01■■□□□ 1.75
LIMS3-204ENST00000482065 CEP170Q5SW79 1584 aa25.97■■□□□ 1.75
LIMS3-204ENST00000482065 NUP160Q12769 1436 aa25.96■■□□□ 1.75
LIMS3-204ENST00000482065 ERCC6L2Q5T890 1561 aa25.86■■□□□ 1.73
LIMS3-204ENST00000482065 KIF27Q86VH2 1401 aa25.83■■□□□ 1.73
LIMS3-204ENST00000482065 SHROOM2Q13796 1616 aa25.8■■□□□ 1.72
LIMS3-204ENST00000482065 IGF1RP08069 1367 aa25.79■■□□□ 1.72
LIMS3-204ENST00000482065 TRHP20396 242 aaPredicted RBP25.73■■□□□ 1.71
LIMS3-204ENST00000482065 RUSC2Q8N2Y8 1516 aa25.73■■□□□ 1.71
LIMS3-204ENST00000482065 CUL7Q14999 1698 aa25.72■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 75.9 ms