RNA–Protein interactions for RNA: ENST00000481929.5

HDAC6-224, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 591 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-224ENST00000481929 NISCHQ9Y2I1 1504 aa38.34■■■■□ 3.73
HDAC6-224ENST00000481929 ABCC9O60706 1549 aa35.32■■■■□ 3.25
HDAC6-224ENST00000481929 CCDC180Q9P1Z9 1646 aa34.69■■■■□ 3.14
HDAC6-224ENST00000481929 DNAJC5BQ9UF47 199 aa33.66■■■□□ 2.98
HDAC6-224ENST00000481929 RB1CC1Q8TDY2 1594 aa33.35■■■□□ 2.93
HDAC6-224ENST00000481929 NACADO15069 1562 aa32.96■■■□□ 2.87
HDAC6-224ENST00000481929 PABPN1Q86U42 306 aaKnown RBP eCLIP32.77■■■□□ 2.84
HDAC6-224ENST00000481929 DCAF8L2P0C7V8 631 aa32.65■■■□□ 2.82
HDAC6-224ENST00000481929 UNC13AQ9UPW8 1703 aa32.53■■■□□ 2.8
HDAC6-224ENST00000481929 BICRAQ9NZM4 1560 aa32.36■■■□□ 2.77
HDAC6-224ENST00000481929 MYO15BQ96JP2 1530 aa32.29■■■□□ 2.76
HDAC6-224ENST00000481929 SHROOM4Q9ULL8 1493 aa31.92■■■□□ 2.7
HDAC6-224ENST00000481929 CECR2Q9BXF3 1484 aa31.9■■■□□ 2.7
HDAC6-224ENST00000481929 CC2D2AQ9P2K1 1620 aa31.86■■■□□ 2.69
HDAC6-224ENST00000481929 ZCCHC6Q5VYS8 1495 aaKnown RBP31.65■■■□□ 2.66
HDAC6-224ENST00000481929 EIF4G1Q04637 1599 aaKnown RBP31.64■■■□□ 2.66
HDAC6-224ENST00000481929 DCAF1Q9Y4B6 1507 aa31.64■■■□□ 2.66
HDAC6-224ENST00000481929 SCRIBQ14160 1630 aa31.57■■■□□ 2.64
HDAC6-224ENST00000481929 DNAJC5Q9H3Z4 198 aa31.41■■■□□ 2.62
HDAC6-224ENST00000481929 CUX2O14529 1486 aa30.73■■■□□ 2.51
HDAC6-224ENST00000481929 ERCC6Q03468 1493 aa30.58■■■□□ 2.49
HDAC6-224ENST00000481929 NCAPD3P42695 1498 aa30.43■■■□□ 2.46
HDAC6-224ENST00000481929 ATAD2BQ9ULI0 1458 aa30.24■■■□□ 2.43
HDAC6-224ENST00000481929 HMGXB3Q12766 1538 aa30.16■■■□□ 2.42
HDAC6-224ENST00000481929 SMARCA2P51531 1590 aa30.15■■■□□ 2.42
HDAC6-224ENST00000481929 NESP48681 1621 aa30.14■■■□□ 2.42
HDAC6-224ENST00000481929 SMARCA4P51532 1647 aa30.05■■■□□ 2.4
HDAC6-224ENST00000481929 THOC2Q8NI27 1593 aaKnown RBP29.98■■■□□ 2.39
HDAC6-224ENST00000481929 BAZ1BQ9UIG0 1483 aaKnown RBP29.93■■■□□ 2.38
HDAC6-224ENST00000481929 LAMC3Q9Y6N6 1575 aa29.86■■■□□ 2.37
HDAC6-224ENST00000481929 BAZ1AQ9NRL2 1556 aaPredicted RBP29.82■■■□□ 2.36
HDAC6-224ENST00000481929 TRIM41Q8WV44 630 aa29.79■■■□□ 2.36
HDAC6-224ENST00000481929 PEG3Q9GZU2 1588 aa29.76■■■□□ 2.35
HDAC6-224ENST00000481929 KIF21AQ7Z4S6 1674 aa29.72■■■□□ 2.35
HDAC6-224ENST00000481929 PDS5BQ9NTI5 1447 aa29.72■■■□□ 2.35
HDAC6-224ENST00000481929 MROH2BQ7Z745 1585 aa29.52■■■□□ 2.32
HDAC6-224ENST00000481929 MRC2Q9UBG0 1479 aa29.5■■■□□ 2.31
HDAC6-224ENST00000481929 CADPSQ9ULU8 1353 aa29.48■■■□□ 2.31
HDAC6-224ENST00000481929 WDR62O43379 1518 aa29.44■■■□□ 2.3
HDAC6-224ENST00000481929 CEP164Q9UPV0 1460 aa29.25■■■□□ 2.27
HDAC6-224ENST00000481929 OSCARQ8IYS5 282 aa29.21■■■□□ 2.27
HDAC6-224ENST00000481929 FANCD2Q9BXW9 1451 aa29.16■■■□□ 2.26
HDAC6-224ENST00000481929 WIZO95785 1651 aa29.13■■■□□ 2.25
HDAC6-224ENST00000481929 CFTRP13569 1480 aa29.01■■■□□ 2.23
HDAC6-224ENST00000481929 URB2Q14146 1524 aaKnown RBP28.94■■■□□ 2.22
HDAC6-224ENST00000481929 RIMBP3CA6NJZ7 1639 aa28.89■■■□□ 2.22
HDAC6-224ENST00000481929 RIMBP3BA6NNM3 1639 aa28.89■■■□□ 2.22
HDAC6-224ENST00000481929 RIMBP3Q9UFD9 1639 aa28.89■■■□□ 2.22
HDAC6-224ENST00000481929 TOP2AP11388 1531 aaKnown RBP28.75■■■□□ 2.19
HDAC6-224ENST00000481929 ARHGEF11O15085 1522 aa28.74■■■□□ 2.19
HDAC6-224ENST00000481929 IFT140Q96RY7 1462 aa28.7■■■□□ 2.18
HDAC6-224ENST00000481929 ZNF608Q9ULD9 1512 aaPredicted RBP28.69■■■□□ 2.18
HDAC6-224ENST00000481929 RSF1Q96T23 1441 aaPredicted RBP28.69■■■□□ 2.18
HDAC6-224ENST00000481929 PRDM2Q13029 1718 aa28.63■■■□□ 2.17
HDAC6-224ENST00000481929 CYB5RLQ6IPT4 315 aa28.56■■■□□ 2.16
HDAC6-224ENST00000481929 TOPBP1Q92547 1522 aa28.52■■■□□ 2.16
HDAC6-224ENST00000481929 EIF4G3O43432 1585 aaKnown RBP28.5■■■□□ 2.15
HDAC6-224ENST00000481929 TRHP20396 242 aaPredicted RBP28.49■■■□□ 2.15
HDAC6-224ENST00000481929 ABCC8Q09428 1581 aa28.43■■■□□ 2.14
HDAC6-224ENST00000481929 CCDC88BA6NC98 1476 aa28.41■■■□□ 2.14
HDAC6-224ENST00000481929 ARAP1Q96P48 1450 aa28.41■■■□□ 2.14
HDAC6-224ENST00000481929 CHD1O14646 1710 aa28.4■■■□□ 2.14
HDAC6-224ENST00000481929 DNMBPQ6XZF7 1577 aa28.37■■■□□ 2.13
HDAC6-224ENST00000481929 AQRO60306 1485 aaKnown RBP eCLIP28.34■■■□□ 2.132e-14■■■■■ 33.6
HDAC6-224ENST00000481929 FBLN2P98095 1184 aa28.32■■■□□ 2.12
HDAC6-224ENST00000481929 TARBP1Q13395 1621 aaKnown RBP28.3■■■□□ 2.12
HDAC6-224ENST00000481929 POLA1P09884 1462 aaPredicted RBP28.19■■■□□ 2.1
HDAC6-224ENST00000481929 AEBP2Q6ZN18 517 aaPredicted RBP28.15■■■□□ 2.1
HDAC6-224ENST00000481929 RAD54L2Q9Y4B4 1467 aa28.08■■■□□ 2.09
HDAC6-224ENST00000481929 TDRD9Q8NDG6 1382 aaKnown RBP28.08■■■□□ 2.09
HDAC6-224ENST00000481929 CLASP1Q7Z460 1538 aa28.08■■■□□ 2.08
HDAC6-224ENST00000481929 SNAPC4Q5SXM2 1469 aa28.06■■■□□ 2.08
HDAC6-224ENST00000481929 SOGA1O94964 1423 aa28.05■■■□□ 2.08
HDAC6-224ENST00000481929 SYNJ1O43426 1573 aa28.03■■■□□ 2.08
HDAC6-224ENST00000481929 CHMP7Q8WUX9 453 aaPredicted RBP28.01■■■□□ 2.07
HDAC6-224ENST00000481929 WDR97A6NE52 1622 aa28■■■□□ 2.07
HDAC6-224ENST00000481929 MAGI1Q96QZ7 1491 aaPredicted RBP27.96■■■□□ 2.07
HDAC6-224ENST00000481929 FGD5Q6ZNL6 1462 aa27.92■■■□□ 2.06
HDAC6-224ENST00000481929 GRIN2BQ13224 1484 aa27.89■■■□□ 2.06
HDAC6-224ENST00000481929 SYNJ2O15056 1496 aa27.88■■■□□ 2.05
HDAC6-224ENST00000481929 GAPVD1Q14C86 1478 aa27.83■■■□□ 2.05
HDAC6-224ENST00000481929 CUX1P39880 1505 aa27.78■■■□□ 2.04
HDAC6-224ENST00000481929 PBRM1Q86U86 1689 aa27.72■■■□□ 2.03
HDAC6-224ENST00000481929 ABCA5Q8WWZ7 1642 aa27.58■■■□□ 2.01
HDAC6-224ENST00000481929 ABCA10Q8WWZ4 1543 aa27.57■■■□□ 2
HDAC6-224ENST00000481929 ERCC6L2Q5T890 1561 aa27.56■■■□□ 2
HDAC6-224ENST00000481929 GRIN2AQ12879 1464 aa27.53■■■□□ 2
HDAC6-224ENST00000481929 CEP170Q5SW79 1584 aa27.49■■□□□ 1.99
HDAC6-224ENST00000481929 NUP160Q12769 1436 aa27.46■■□□□ 1.99
HDAC6-224ENST00000481929 ADAMTS12P58397 1594 aa27.43■■□□□ 1.98
HDAC6-224ENST00000481929 SHROOM2Q13796 1616 aa27.4■■□□□ 1.98
HDAC6-224ENST00000481929 KIF13AQ9H1H9 1805 aa27.37■■□□□ 1.97
HDAC6-224ENST00000481929 WRNQ14191 1432 aaPredicted RBP eCLIP27.35■■□□□ 1.97
HDAC6-224ENST00000481929 FHAD1B1AJZ9 1412 aa27.33■■□□□ 1.97
HDAC6-224ENST00000481929 PRG4Q92954 1404 aaPredicted RBP27.26■■□□□ 1.95
HDAC6-224ENST00000481929 ERICH3Q5RHP9 1530 aa27.21■■□□□ 1.95
HDAC6-224ENST00000481929 FAM69CQ0P6D2 419 aa27.2■■□□□ 1.94
HDAC6-224ENST00000481929 ABCC10Q5T3U5 1492 aa27.19■■□□□ 1.94
HDAC6-224ENST00000481929 TOP2BQ02880 1626 aa27.17■■□□□ 1.94
HDAC6-224ENST00000481929 BIVM-ERCC5R4GMW8 1640 aa27.17■■□□□ 1.94
Retrieved 100 of 20,778 RNA–protein pairs in 147 ms