RNA–Protein interactions for RNA: ENST00000481441.1

RXRB-203, Transcript of retinoid X receptor beta, humanhuman

TSL 2

Gene RXRB, Length 1,330 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RXRB-203ENST00000481441 NISCHQ9Y2I1 1504 aa44.39■■■■■ 4.7
RXRB-203ENST00000481441 ABCC9O60706 1549 aa40.5■■■■■ 4.07
RXRB-203ENST00000481441 CCDC180Q9P1Z9 1646 aa40.07■■■■■ 4
RXRB-203ENST00000481441 DNAJC5BQ9UF47 199 aa38.46■■■■□ 3.75
RXRB-203ENST00000481441 RB1CC1Q8TDY2 1594 aa38.35■■■■□ 3.73
RXRB-203ENST00000481441 NACADO15069 1562 aa37.98■■■■□ 3.67
RXRB-203ENST00000481441 PABPN1Q86U42 306 aaKnown RBP eCLIP37.61■■■■□ 3.61
RXRB-203ENST00000481441 DCAF8L2P0C7V8 631 aa37.59■■■■□ 3.61
RXRB-203ENST00000481441 UNC13AQ9UPW8 1703 aa37.54■■■■□ 3.6
RXRB-203ENST00000481441 MYO15BQ96JP2 1530 aa37.31■■■■□ 3.56
RXRB-203ENST00000481441 BICRAQ9NZM4 1560 aa37.3■■■■□ 3.56
RXRB-203ENST00000481441 SHROOM4Q9ULL8 1493 aa36.72■■■■□ 3.47
RXRB-203ENST00000481441 ZCCHC6Q5VYS8 1495 aaKnown RBP36.68■■■■□ 3.46
RXRB-203ENST00000481441 DCAF1Q9Y4B6 1507 aa36.65■■■■□ 3.46
RXRB-203ENST00000481441 CC2D2AQ9P2K1 1620 aa36.59■■■■□ 3.45
RXRB-203ENST00000481441 CECR2Q9BXF3 1484 aa36.54■■■■□ 3.44
RXRB-203ENST00000481441 SCRIBQ14160 1630 aa36.44■■■■□ 3.42
RXRB-203ENST00000481441 EIF4G1Q04637 1599 aaKnown RBP36.39■■■■□ 3.42
RXRB-203ENST00000481441 DNAJC5Q9H3Z4 198 aa35.67■■■■□ 3.3
RXRB-203ENST00000481441 CUX2O14529 1486 aa35.12■■■■□ 3.21
RXRB-203ENST00000481441 NCAPD3P42695 1498 aa35.07■■■■□ 3.2
RXRB-203ENST00000481441 ERCC6Q03468 1493 aa34.98■■■■□ 3.19
RXRB-203ENST00000481441 ATAD2BQ9ULI0 1458 aa34.88■■■■□ 3.17
RXRB-203ENST00000481441 HMGXB3Q12766 1538 aa34.76■■■■□ 3.16
RXRB-203ENST00000481441 SMARCA2P51531 1590 aa34.75■■■■□ 3.15
RXRB-203ENST00000481441 SMARCA4P51532 1647 aa34.74■■■■□ 3.15
RXRB-203ENST00000481441 NESP48681 1621 aa34.67■■■■□ 3.14
RXRB-203ENST00000481441 BAZ1BQ9UIG0 1483 aaKnown RBP34.49■■■■□ 3.11
RXRB-203ENST00000481441 BAZ1AQ9NRL2 1556 aaPredicted RBP34.47■■■■□ 3.11
RXRB-203ENST00000481441 THOC2Q8NI27 1593 aaKnown RBP34.44■■■■□ 3.1
RXRB-203ENST00000481441 PEG3Q9GZU2 1588 aa34.42■■■■□ 3.1
RXRB-203ENST00000481441 LAMC3Q9Y6N6 1575 aa34.35■■■■□ 3.09
RXRB-203ENST00000481441 KIF21AQ7Z4S6 1674 aa34.23■■■■□ 3.07
RXRB-203ENST00000481441 MROH2BQ7Z745 1585 aa34.2■■■■□ 3.06
RXRB-203ENST00000481441 PDS5BQ9NTI5 1447 aa34.14■■■■□ 3.06
RXRB-203ENST00000481441 CADPSQ9ULU8 1353 aa33.95■■■■□ 3.03
RXRB-203ENST00000481441 MRC2Q9UBG0 1479 aa33.9■■■■□ 3.02
RXRB-203ENST00000481441 WDR62O43379 1518 aa33.85■■■■□ 3.01
RXRB-203ENST00000481441 TRIM41Q8WV44 630 aa33.83■■■■□ 3.01
RXRB-203ENST00000481441 WIZO95785 1651 aa33.77■■■■□ 3
RXRB-203ENST00000481441 CEP164Q9UPV0 1460 aa33.65■■■□□ 2.98
RXRB-203ENST00000481441 FANCD2Q9BXW9 1451 aa33.57■■■□□ 2.96
RXRB-203ENST00000481441 CFTRP13569 1480 aa33.49■■■□□ 2.95
RXRB-203ENST00000481441 OSCARQ8IYS5 282 aa33.41■■■□□ 2.94
RXRB-203ENST00000481441 URB2Q14146 1524 aaKnown RBP33.35■■■□□ 2.93
RXRB-203ENST00000481441 RSF1Q96T23 1441 aaPredicted RBP33.29■■■□□ 2.92
RXRB-203ENST00000481441 TOP2AP11388 1531 aaKnown RBP33.29■■■□□ 2.92
RXRB-203ENST00000481441 PRDM2Q13029 1718 aa33.14■■■□□ 2.9
RXRB-203ENST00000481441 RIMBP3CA6NJZ7 1639 aa33.07■■■□□ 2.88
RXRB-203ENST00000481441 RIMBP3BA6NNM3 1639 aa33.07■■■□□ 2.88
RXRB-203ENST00000481441 RIMBP3Q9UFD9 1639 aa33.07■■■□□ 2.88
RXRB-203ENST00000481441 ZNF608Q9ULD9 1512 aaPredicted RBP33.02■■■□□ 2.88
RXRB-203ENST00000481441 IFT140Q96RY7 1462 aa33.01■■■□□ 2.87
RXRB-203ENST00000481441 CCDC88BA6NC98 1476 aa32.91■■■□□ 2.86
RXRB-203ENST00000481441 ARHGEF11O15085 1522 aa32.9■■■□□ 2.86
RXRB-203ENST00000481441 TOPBP1Q92547 1522 aa32.9■■■□□ 2.86
RXRB-203ENST00000481441 EIF4G3O43432 1585 aaKnown RBP32.81■■■□□ 2.84
RXRB-203ENST00000481441 ABCC8Q09428 1581 aa32.77■■■□□ 2.84
RXRB-203ENST00000481441 DNMBPQ6XZF7 1577 aa32.73■■■□□ 2.83
RXRB-203ENST00000481441 CHD1O14646 1710 aa32.67■■■□□ 2.82
RXRB-203ENST00000481441 TARBP1Q13395 1621 aaKnown RBP32.67■■■□□ 2.82
RXRB-203ENST00000481441 CYB5RLQ6IPT4 315 aa32.66■■■□□ 2.82
RXRB-203ENST00000481441 AQRO60306 1485 aaKnown RBP eCLIP32.64■■■□□ 2.826e-8■■■□□ 15
RXRB-203ENST00000481441 ARAP1Q96P48 1450 aa32.56■■■□□ 2.8
RXRB-203ENST00000481441 POLA1P09884 1462 aaPredicted RBP32.53■■■□□ 2.8
RXRB-203ENST00000481441 FBLN2P98095 1184 aa32.47■■■□□ 2.79
RXRB-203ENST00000481441 TRHP20396 242 aaPredicted RBP32.42■■■□□ 2.78
RXRB-203ENST00000481441 RAD54L2Q9Y4B4 1467 aa32.41■■■□□ 2.78
RXRB-203ENST00000481441 TDRD9Q8NDG6 1382 aaKnown RBP32.35■■■□□ 2.77
RXRB-203ENST00000481441 SOGA1O94964 1423 aa32.35■■■□□ 2.77
RXRB-203ENST00000481441 SNAPC4Q5SXM2 1469 aa32.29■■■□□ 2.76
RXRB-203ENST00000481441 CLASP1Q7Z460 1538 aa32.29■■■□□ 2.76
RXRB-203ENST00000481441 WDR97A6NE52 1622 aa32.28■■■□□ 2.76
RXRB-203ENST00000481441 FGD5Q6ZNL6 1462 aa32.25■■■□□ 2.75
RXRB-203ENST00000481441 SYNJ1O43426 1573 aa32.2■■■□□ 2.74
RXRB-203ENST00000481441 MAGI1Q96QZ7 1491 aaPredicted RBP32.19■■■□□ 2.74
RXRB-203ENST00000481441 CHMP7Q8WUX9 453 aaPredicted RBP32.17■■■□□ 2.74
RXRB-203ENST00000481441 CUX1P39880 1505 aa32.16■■■□□ 2.74
RXRB-203ENST00000481441 GRIN2BQ13224 1484 aa32.13■■■□□ 2.73
RXRB-203ENST00000481441 SYNJ2O15056 1496 aa32.1■■■□□ 2.73
RXRB-203ENST00000481441 PBRM1Q86U86 1689 aa32■■■□□ 2.71
RXRB-203ENST00000481441 GAPVD1Q14C86 1478 aa31.95■■■□□ 2.71
RXRB-203ENST00000481441 ABCA5Q8WWZ7 1642 aa31.88■■■□□ 2.69
RXRB-203ENST00000481441 ABCA10Q8WWZ4 1543 aa31.86■■■□□ 2.69
RXRB-203ENST00000481441 AEBP2Q6ZN18 517 aaPredicted RBP31.82■■■□□ 2.68
RXRB-203ENST00000481441 ERCC6L2Q5T890 1561 aa31.75■■■□□ 2.67
RXRB-203ENST00000481441 GRIN2AQ12879 1464 aa31.72■■■□□ 2.67
RXRB-203ENST00000481441 NUP160Q12769 1436 aa31.66■■■□□ 2.66
RXRB-203ENST00000481441 ADAMTS12P58397 1594 aa31.66■■■□□ 2.66
RXRB-203ENST00000481441 CEP170Q5SW79 1584 aa31.65■■■□□ 2.66
RXRB-203ENST00000481441 WRNQ14191 1432 aaPredicted RBP eCLIP31.61■■■□□ 2.655e-6■■■■■ 29.2
RXRB-203ENST00000481441 SHROOM2Q13796 1616 aa31.6■■■□□ 2.65
RXRB-203ENST00000481441 BIVM-ERCC5R4GMW8 1640 aa31.53■■■□□ 2.64
RXRB-203ENST00000481441 FHAD1B1AJZ9 1412 aa31.53■■■□□ 2.64
RXRB-203ENST00000481441 TOP2BQ02880 1626 aa31.51■■■□□ 2.63
RXRB-203ENST00000481441 KIF13AQ9H1H9 1805 aa31.45■■■□□ 2.62
RXRB-203ENST00000481441 ERICH3Q5RHP9 1530 aa31.45■■■□□ 2.62
RXRB-203ENST00000481441 SUPT5HO00267 1087 aaKnown RBP31.39■■■□□ 2.62
RXRB-203ENST00000481441 PRG4Q92954 1404 aaPredicted RBP31.37■■■□□ 2.61
RXRB-203ENST00000481441 JPH4Q96JJ6 628 aa31.29■■■□□ 2.6
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms