RNA–Protein interactions for RNA: ENST00000481296.1

KDM4A-204, Transcript of lysine demethylase 4A, humanhuman

TSL 2

Gene KDM4A, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KDM4A-204ENST00000481296 NISCHQ9Y2I1 1504 aa22.78■■□□□ 1.24
KDM4A-204ENST00000481296 CCDC180Q9P1Z9 1646 aa20.27■□□□□ 0.83
KDM4A-204ENST00000481296 ABCC9O60706 1549 aa19.3■□□□□ 0.68
KDM4A-204ENST00000481296 ZCCHC6Q5VYS8 1495 aaKnown RBP19.1■□□□□ 0.65
KDM4A-204ENST00000481296 DCAF1Q9Y4B6 1507 aa18.89■□□□□ 0.61
KDM4A-204ENST00000481296 NACADO15069 1562 aa18.85■□□□□ 0.61
KDM4A-204ENST00000481296 MYO15BQ96JP2 1530 aa18.82■□□□□ 0.6
KDM4A-204ENST00000481296 RB1CC1Q8TDY2 1594 aa18.81■□□□□ 0.6
KDM4A-204ENST00000481296 DCAF8L2P0C7V8 631 aa18.72■□□□□ 0.59
KDM4A-204ENST00000481296 UNC13AQ9UPW8 1703 aa18.54■□□□□ 0.56
KDM4A-204ENST00000481296 SCRIBQ14160 1630 aa18.46■□□□□ 0.55
KDM4A-204ENST00000481296 BICRAQ9NZM4 1560 aa18.21■□□□□ 0.51
KDM4A-204ENST00000481296 SHROOM4Q9ULL8 1493 aa18.17■□□□□ 0.5
KDM4A-204ENST00000481296 PABPN1Q86U42 306 aaKnown RBP eCLIP17.97■□□□□ 0.47
KDM4A-204ENST00000481296 EIF4G1Q04637 1599 aaKnown RBP17.7■□□□□ 0.42
KDM4A-204ENST00000481296 SMARCA4P51532 1647 aa17.69■□□□□ 0.42
KDM4A-204ENST00000481296 BAZ1AQ9NRL2 1556 aaPredicted RBP17.68■□□□□ 0.42
KDM4A-204ENST00000481296 CECR2Q9BXF3 1484 aa17.67■□□□□ 0.42
KDM4A-204ENST00000481296 MROH2BQ7Z745 1585 aa17.57■□□□□ 0.4
KDM4A-204ENST00000481296 CC2D2AQ9P2K1 1620 aa17.54■□□□□ 0.4
KDM4A-204ENST00000481296 PEG3Q9GZU2 1588 aa17.48■□□□□ 0.39
KDM4A-204ENST00000481296 WIZO95785 1651 aa17.48■□□□□ 0.39
KDM4A-204ENST00000481296 SMARCA2P51531 1590 aa17.45■□□□□ 0.38
KDM4A-204ENST00000481296 RSF1Q96T23 1441 aaPredicted RBP17.44■□□□□ 0.38
KDM4A-204ENST00000481296 ATAD2BQ9ULI0 1458 aa17.38■□□□□ 0.37
KDM4A-204ENST00000481296 HMGXB3Q12766 1538 aa17.36■□□□□ 0.37
KDM4A-204ENST00000481296 BAZ1BQ9UIG0 1483 aaKnown RBP17.31■□□□□ 0.36
KDM4A-204ENST00000481296 TOP2AP11388 1531 aaKnown RBP17.3■□□□□ 0.36
KDM4A-204ENST00000481296 NCAPD3P42695 1498 aa17.29■□□□□ 0.36
KDM4A-204ENST00000481296 SUPT5HO00267 1087 aaKnown RBP17.21■□□□□ 0.35
KDM4A-204ENST00000481296 DNAJC5BQ9UF47 199 aa17.21■□□□□ 0.35
KDM4A-204ENST00000481296 PRDM2Q13029 1718 aa17.01■□□□□ 0.31
KDM4A-204ENST00000481296 CCDC88BA6NC98 1476 aa16.99■□□□□ 0.31
KDM4A-204ENST00000481296 LAMC3Q9Y6N6 1575 aa16.89■□□□□ 0.3
KDM4A-204ENST00000481296 NESP48681 1621 aa16.81■□□□□ 0.28
KDM4A-204ENST00000481296 CFTRP13569 1480 aa16.8■□□□□ 0.28
KDM4A-204ENST00000481296 KIF21AQ7Z4S6 1674 aa16.79■□□□□ 0.28
KDM4A-204ENST00000481296 CADPSQ9ULU8 1353 aa16.78■□□□□ 0.28
KDM4A-204ENST00000481296 FANCD2Q9BXW9 1451 aa16.67■□□□□ 0.26
KDM4A-204ENST00000481296 PDS5BQ9NTI5 1447 aa16.66■□□□□ 0.26
KDM4A-204ENST00000481296 CEP164Q9UPV0 1460 aa16.64■□□□□ 0.25
KDM4A-204ENST00000481296 ERCC6Q03468 1493 aa16.62■□□□□ 0.25
KDM4A-204ENST00000481296 THOC2Q8NI27 1593 aaKnown RBP16.6■□□□□ 0.25
KDM4A-204ENST00000481296 ABCC8Q09428 1581 aa16.57■□□□□ 0.24
KDM4A-204ENST00000481296 BIVM-ERCC5R4GMW8 1640 aa16.53■□□□□ 0.24
KDM4A-204ENST00000481296 MRC2Q9UBG0 1479 aa16.53■□□□□ 0.24
KDM4A-204ENST00000481296 DNMBPQ6XZF7 1577 aa16.52■□□□□ 0.24
KDM4A-204ENST00000481296 WDR62O43379 1518 aa16.5■□□□□ 0.23
KDM4A-204ENST00000481296 SYNJ1O43426 1573 aa16.5■□□□□ 0.23
KDM4A-204ENST00000481296 URB2Q14146 1524 aaKnown RBP16.49■□□□□ 0.23
KDM4A-204ENST00000481296 CUX1P39880 1505 aa16.48■□□□□ 0.23
KDM4A-204ENST00000481296 TOP2BQ02880 1626 aa16.48■□□□□ 0.23
KDM4A-204ENST00000481296 WRNQ14191 1432 aaPredicted RBP eCLIP16.46■□□□□ 0.23
KDM4A-204ENST00000481296 TOPBP1Q92547 1522 aa16.46■□□□□ 0.23
KDM4A-204ENST00000481296 WDR97A6NE52 1622 aa16.37■□□□□ 0.21
KDM4A-204ENST00000481296 FGD5Q6ZNL6 1462 aa16.36■□□□□ 0.21
KDM4A-204ENST00000481296 POLA1P09884 1462 aaPredicted RBP16.34■□□□□ 0.21
KDM4A-204ENST00000481296 CUX2O14529 1486 aa16.31■□□□□ 0.2
KDM4A-204ENST00000481296 TARBP1Q13395 1621 aaKnown RBP16.3■□□□□ 0.2
KDM4A-204ENST00000481296 CHIC1Q5VXU3 224 aa16.25■□□□□ 0.19
KDM4A-204ENST00000481296 IFT140Q96RY7 1462 aa16.24■□□□□ 0.19
KDM4A-204ENST00000481296 TRIM41Q8WV44 630 aa16.23■□□□□ 0.19
KDM4A-204ENST00000481296 RAD54L2Q9Y4B4 1467 aa16.22■□□□□ 0.19
KDM4A-204ENST00000481296 PBRM1Q86U86 1689 aa16.22■□□□□ 0.19
KDM4A-204ENST00000481296 EIF4G3O43432 1585 aaKnown RBP16.21■□□□□ 0.19
KDM4A-204ENST00000481296 ABCA5Q8WWZ7 1642 aa16.21■□□□□ 0.19
KDM4A-204ENST00000481296 SOGA1O94964 1423 aa16.2■□□□□ 0.18
KDM4A-204ENST00000481296 ABCA10Q8WWZ4 1543 aa16.2■□□□□ 0.18
KDM4A-204ENST00000481296 ZNF608Q9ULD9 1512 aaPredicted RBP16.13■□□□□ 0.17
KDM4A-204ENST00000481296 KIF27Q86VH2 1401 aa16.08■□□□□ 0.16
KDM4A-204ENST00000481296 GAPVD1Q14C86 1478 aa16.07■□□□□ 0.16
KDM4A-204ENST00000481296 CUL7Q14999 1698 aa16.07■□□□□ 0.16
KDM4A-204ENST00000481296 ERICH3Q5RHP9 1530 aa16.05■□□□□ 0.16
KDM4A-204ENST00000481296 RUSC2Q8N2Y8 1516 aa16.04■□□□□ 0.16
KDM4A-204ENST00000481296 AQRO60306 1485 aaKnown RBP eCLIP16.04■□□□□ 0.168e-7■■■■■ 28.7
KDM4A-204ENST00000481296 EEA1Q15075 1411 aa16.04■□□□□ 0.16
KDM4A-204ENST00000481296 TDRD9Q8NDG6 1382 aaKnown RBP16.04■□□□□ 0.16
KDM4A-204ENST00000481296 ADAMTS12P58397 1594 aa16.03■□□□□ 0.16
KDM4A-204ENST00000481296 GRIN2BQ13224 1484 aa16.02■□□□□ 0.15
KDM4A-204ENST00000481296 CHD1O14646 1710 aa15.99■□□□□ 0.15
KDM4A-204ENST00000481296 SNAPC4Q5SXM2 1469 aa15.98■□□□□ 0.15
KDM4A-204ENST00000481296 MAGI1Q96QZ7 1491 aaPredicted RBP15.97■□□□□ 0.15
KDM4A-204ENST00000481296 KIF21BO75037 1637 aa15.95■□□□□ 0.14
KDM4A-204ENST00000481296 CTTNBP2Q8WZ74 1663 aa15.89■□□□□ 0.13
KDM4A-204ENST00000481296 FAM9AQ8IZU1 332 aaPredicted RBP15.89■□□□□ 0.13
KDM4A-204ENST00000481296 SYNJ2O15056 1496 aa15.89■□□□□ 0.13
KDM4A-204ENST00000481296 IGF1RP08069 1367 aa15.88■□□□□ 0.13
KDM4A-204ENST00000481296 FHAD1B1AJZ9 1412 aa15.88■□□□□ 0.13
KDM4A-204ENST00000481296 PRXQ9BXM0 1461 aa15.86■□□□□ 0.13
KDM4A-204ENST00000481296 GRIN2AQ12879 1464 aa15.84■□□□□ 0.13
KDM4A-204ENST00000481296 RAPGEF2Q9Y4G8 1499 aa15.84■□□□□ 0.13
KDM4A-204ENST00000481296 CSRNP3Q8WYN3 585 aa15.84■□□□□ 0.13
KDM4A-204ENST00000481296 CARMIL1Q5VZK9 1371 aa15.84■□□□□ 0.13
KDM4A-204ENST00000481296 GOLGA3Q08378 1498 aa15.81■□□□□ 0.12
KDM4A-204ENST00000481296 CEP170Q5SW79 1584 aa15.79■□□□□ 0.12
KDM4A-204ENST00000481296 CHMP7Q8WUX9 453 aaPredicted RBP15.73■□□□□ 0.11
KDM4A-204ENST00000481296 NUP160Q12769 1436 aa15.73■□□□□ 0.11
KDM4A-204ENST00000481296 IQGAP2Q13576 1575 aa15.72■□□□□ 0.11
KDM4A-204ENST00000481296 FBLN2P98095 1184 aa15.72■□□□□ 0.11
KDM4A-204ENST00000481296 CLASP1Q7Z460 1538 aa15.72■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms